Rh1AG202200

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0025830
Physical Location & Seq
Forward (+)
38343486 .. 38344134
649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG202200.1

Sequence Viewer

Length: 345 bp
ATGAGGGGTGGCAGCAACAACAGCGATCGGGGTCTCAGAAAGTGGAAGGTGCTCATCATCGCTGCTCTCATCCTTGCCGCTGCCATCAGTGCTGCTCATCGTTTCGAGGACTCTGATCTCAACACAAATCTAGCTAAATCAGACCATGAAGAACAACGGGATGAAGATGACAAGCTTGCAGCAGAAACCCGTACTGAAGGCAATAACAACCGTGCGCGGGGTCCCAGAAAGTGGAAGGTGCTCATCATTGCTGCTGTCATGTTAACTCTCTGTTTATCTGTTTGCTGGTTCTTCTTTTTCTCCGCTAAAGACAGATACATGGAATCCATTTTGGTTCCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

114

Amino Acids

12.88

Weight (kDa)

8.68

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025830)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_4G00308020
rosa_samantha Rh1AG202200 Rh1CG187100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 231
AccII CGCG 1 cut(s) 217
AciI CCGC 3 cut(s) 78, 217, 303
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 2 cut(s) 217, 231
AluBI AGCT 2 cut(s) 134, 175
AluI AGCT 2 cut(s) 134, 175
Alw21I GWGCWC 2 cut(s) 54, 243
Alw26I GTCTC 1 cut(s) 38
ApeKI GCWGC 6 cut(s) 12, 62, 80, 92, 179, 251
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 221
AvaII GGWCC 1 cut(s) 221
Bbv12I GWGCWC 2 cut(s) 54, 243
BbvI GCAGC 6 cut(s) 24, 49, 67, 79, 191, 238
BccI CCATC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 131
BisI GCNGC 7 cut(s) 13, 63, 78, 81, 93, 180, 252
BlsI GCNGC 7 cut(s) 14, 64, 79, 82, 94, 181, 253
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 3 cut(s) 222, 223, 336
BsaI GGTCTC 1 cut(s) 38
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 231
Bse3DI GCAATG 1 cut(s) 246
BseGI GGATG 2 cut(s) 69, 166
BseLI CCNNNNNNNGG 2 cut(s) 217, 231
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 49
BseXI GCAGC 6 cut(s) 24, 49, 67, 79, 191, 238
Bsh1236I CGCG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 2 cut(s) 54, 243
BslFI GGGAC 1 cut(s) 207
BslI CCNNNNNNNGG 2 cut(s) 217, 231
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 54, 243
Bsp143I GATC 2 cut(s) 25, 115
BspACI CCGC 3 cut(s) 78, 217, 303
BspCNI CTCAG 1 cut(s) 48
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 222, 223, 336
BspTNI GGTCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 246
BssMI GATC 2 cut(s) 25, 115
Bst4CI ACNGT 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 69, 166
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 28, 118
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 25, 115
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 21, 89
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 6 cut(s) 24, 49, 67, 79, 191, 238
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 69, 166
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 192
CviAII CATG 4 cut(s) 146, 259, 319, 342
CviJI RGCY 2 cut(s) 134, 175
CviKI_1 RGCY 2 cut(s) 134, 175
CviQI GTAC 1 cut(s) 192
DdeI CTNAG 1 cut(s) 35
DpnI GATC 2 cut(s) 27, 117
DpnII GATC 2 cut(s) 25, 115
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 221
FaeI CATG 4 cut(s) 149, 262, 322, 345
FaiI YATR 4 cut(s) 147, 260, 320, 343
FaqI GGGAC 1 cut(s) 207
FatI CATG 4 cut(s) 145, 258, 318, 341
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 7 cut(s) 13, 63, 78, 81, 93, 180, 252
FokI GGATG 2 cut(s) 56, 173
Fsp4HI GCNGC 7 cut(s) 13, 63, 78, 81, 93, 180, 252
FspBI CTAG 1 cut(s) 131
GlaI GCGC 1 cut(s) 216
GluI GCNGC 7 cut(s) 13, 63, 78, 81, 93, 180, 252
HhaI GCGC 1 cut(s) 217
Hin1II CATG 4 cut(s) 149, 262, 322, 345
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 110, 323
HpaI GTTAAC 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 3 cut(s) 38, 115, 142
Hpy8I GTNNAC 1 cut(s) 264
HpyAV CCTTC 3 cut(s) 40, 191, 229
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 89
HpyF3I CTNAG 1 cut(s) 35
Hsp92II CATG 4 cut(s) 149, 262, 322, 345
HspAI GCGC 1 cut(s) 215
KflI GGGWCCC 1 cut(s) 221
KspAI GTTAAC 1 cut(s) 264
Kzo9I GATC 2 cut(s) 25, 115
LpnPI CCDG 2 cut(s) 238, 271
Lsp1109I GCAGC 6 cut(s) 24, 49, 67, 79, 191, 238
MaeI CTAG 1 cut(s) 131
MalI GATC 2 cut(s) 27, 117
MboI GATC 2 cut(s) 25, 115
MboII GAAGA 3 cut(s) 161, 176, 283
MhlI GDGCHC 2 cut(s) 54, 243
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 1 cut(s) 100
MseI TTAA 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 80
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 21, 89
NdeII GATC 2 cut(s) 25, 115
NlaIII CATG 4 cut(s) 149, 262, 322, 345
NlaIV GGNNCC 3 cut(s) 222, 223, 336
PfeI GAWTC 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 231
PkrI GCNGC 7 cut(s) 14, 64, 79, 82, 94, 181, 253
Ple19I CGATCG 1 cut(s) 28
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 221
Psp5II RGGWCCY 1 cut(s) 221
PspN4I GGNNCC 3 cut(s) 222, 223, 336
PspPI GGNCC 1 cut(s) 221
PspPPI RGGWCCY 1 cut(s) 221
PvuI CGATCG 1 cut(s) 28
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 7 cut(s) 13, 63, 78, 81, 93, 180, 252
Sau3AI GATC 2 cut(s) 25, 115
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 2 cut(s) 54, 243
SetI ASST 4 cut(s) 51, 136, 177, 240
SinI GGWCC 1 cut(s) 221
SsiI CCGC 3 cut(s) 78, 217, 303
SspMI CTAG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 1 cut(s) 105
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 94
TseI GCWGC 6 cut(s) 12, 62, 80, 92, 179, 251
TspDTI ATGAA 2 cut(s) 162, 177
TspRI CASTG 1 cut(s) 94
Van91I CCANNNNNTGG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 221
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.