Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0032079

Physical Location & Seq

Genomic Coordinates Reverse (-)

33776391 .. 33789716

Gene Structure 13326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAAAAAATCTTTGGACAAGCTTTGCTTGAAGTGCAGCAAAGCAGAGATCTCGTCATCATGGCAAAAAGAACAATGTGAAGCATCACAGTCTACGCCATCCCATGAACAAGAACTGCTGTTCGATTTCCATGAAAAAATCTTTGGACAAGCTTTGCTTGAAGTGCAGCAAAGCAGAGATCTCGTCATCATGGCAAGTAGGATTGTTGGGAGCTATGGCAGCAGACGGAGGGACGCTTTCGATGTTTTCGGTTGTGGAGGATGTGCTTCAAAGAAGCACGGTACTAGTCGAATCGGAGACCTTGATTTAGTGGAGTCCGAAAAGCTGAGCAAGCCGCATCGAGAAGAAATGGGGCGGCTGGGTGGCTTAGAAGGACAATTGATGCCGGTACTCTGCTACTTCTTCTTCCCGGATAACCGTACTACTAATATCACGCCTTTCTTAGAAAAAGTAGGTAATTCAAGAAAGAAGGCCATCATCATTGGAGTAGTGGTTGGAGGTGTAGGTCTTATTTTACTCACCGTTGGAGTTTTGATCTATTTCGGACTTTCAAGGAAGCCCAAGACGGTTCGTAGAGGGGACCTATTGGGCGTAACCGAGTTGCAAGGTCCAGTGAATTATAAGCCGGTTAGCAAGACCACCGACAACACGGTACTCTGCTACTTCTTCTTCCCGGATAACCGGACTACTAATATCACGCCTTTCTTAGAAAAAGTAGGTAATTCAAGAAAGAAGGCCATCATCATTGGAGTAGTGGTTGGAGGTGTAGGTCTTATTTTACTCACCGTTGGAGTTTTGATCTATTTCGGACTTTCAAGGAAGCCCAAGACGGTTCGTAGAGGGGACCTATTGGGCGTAACCGAGTTGCAAGGTCCAAAGAATTATAAGTATAAAGATCTGAAGTCGGCAACAGCAAATTTTAGTGATGCAAATAAGCTAGGAGAAGGACAAAGCAGAAAGGAACTAAGGGCAGCTATATCTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

328

Amino Acids

36.18

Weight (kDa)

9.64

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032079)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_4G00311310 Rroxscaffold_6G00402980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	621, 885
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	2 cut(s)	335, 355
AcsI	RAATTY	1 cut(s)	916
AcuI	CTGAAG	1 cut(s)	920
AfaI	GTAC	4 cut(s)	283, 390, 421, 654
AgsI	TTSAA	7 cut(s)	31, 161, 270, 462, 552, 726, 816
AhlI	ACTAGT	1 cut(s)	284
AjuI	GAANNNNNNNTTGG	3 cut(s)	28, 126, 158
AluBI	AGCT	6 cut(s)	22, 152, 213, 325, 937, 974
AluI	AGCT	6 cut(s)	22, 152, 213, 325, 937, 974
Alw26I	GTCTC	1 cut(s)	291
AoxI	GGCC	2 cut(s)	471, 735
ApeKI	GCWGC	4 cut(s)	36, 166, 219, 971
ApoI	RAATTY	1 cut(s)	916
AspS9I	GGNCC	4 cut(s)	580, 608, 844, 872
AsuC2I	CCSGG	2 cut(s)	410, 674
AsuHPI	GGTGA	2 cut(s)	511, 775
AvaII	GGWCC	4 cut(s)	580, 608, 844, 872
BbvI	GCAGC	4 cut(s)	48, 178, 231, 983
BccI	CCATC	3 cut(s)	106, 482, 746
BcgI	CGANNNNNNTGC	4 cut(s)	33, 67, 163, 197
BcnI	CCSGG	2 cut(s)	410, 674
BcoDI	GTCTC	1 cut(s)	291
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	2 cut(s)	285, 938
BglII	AGATCT	3 cut(s)	48, 178, 895
BisI	GCNGC	6 cut(s)	37, 167, 220, 335, 356, 972
BlpI	GCTNAGC	1 cut(s)	326
BlsI	GCNGC	6 cut(s)	38, 168, 221, 336, 357, 973
Bme1390I	CCNGG	2 cut(s)	410, 674
Bme18I	GGWCC	4 cut(s)	580, 608, 844, 872
BmgT120I	GGNCC	4 cut(s)	580, 608, 844, 872
BmiI	GGNNCC	2 cut(s)	581, 845
BmrFI	CCNGG	2 cut(s)	410, 674
BmsI	GCATC	4 cut(s)	92, 346, 372, 916
Bpu1102I	GCTNAGC	1 cut(s)	326
BpuMI	CCSGG	2 cut(s)	410, 674
BsaI	GGTCTC	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	681
BsaXI	ACNNNNNCTCC	4 cut(s)	477, 507, 741, 771
Bse118I	RCCGGY	2 cut(s)	385, 625
Bse1I	ACTGG	1 cut(s)	611
BseGI	GGATG	2 cut(s)	98, 266
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	1 cut(s)	611
BseXI	GCAGC	4 cut(s)	48, 178, 231, 983
BseYI	CCCAGC	1 cut(s)	358
BsgI	GTGCAG	2 cut(s)	55, 185
BshFI	GGCC	2 cut(s)	473, 737
BsiSI	CCGG	5 cut(s)	386, 410, 626, 674, 682
BslFI	GGGAC	3 cut(s)	245, 593, 857
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	3 cut(s)	245, 593, 857
BsnI	GGCC	2 cut(s)	473, 737
Bso31I	GGTCTC	1 cut(s)	291
Bsp143I	GATC	5 cut(s)	48, 178, 534, 798, 895
Bsp1720I	GCTNAGC	1 cut(s)	326
BspACI	CCGC	2 cut(s)	335, 355
BspANI	GGCC	2 cut(s)	473, 737
BspCNI	CTCAG	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	581, 845
BspTNI	GGTCTC	1 cut(s)	291
BsrFI	RCCGGY	2 cut(s)	385, 625
BsrI	ACTGG	1 cut(s)	611
BssAI	RCCGGY	2 cut(s)	385, 625
BssMI	GATC	5 cut(s)	48, 178, 534, 798, 895
Bst4CI	ACNGT	8 cut(s)	90, 281, 419, 523, 568, 652, 787, 832
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	5 cut(s)	326, 367, 442, 706, 965
BstF5I	GGATG	2 cut(s)	98, 266
BstKTI	GATC	5 cut(s)	51, 181, 537, 801, 898
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	5 cut(s)	48, 178, 534, 798, 895
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 163, 219, 331
BstSCI	CCNGG	2 cut(s)	408, 672
BstV1I	GCAGC	4 cut(s)	48, 178, 231, 983
BstX2I	RGATCY	3 cut(s)	48, 178, 895
BstYI	RGATCY	3 cut(s)	48, 178, 895
BsuRI	GGCC	2 cut(s)	473, 737
BtsCI	GGATG	2 cut(s)	98, 266
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	1 cut(s)	332
Cfr10I	RCCGGY	2 cut(s)	385, 625
Cfr13I	GGNCC	4 cut(s)	580, 608, 844, 872
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	4 cut(s)	282, 389, 420, 653
CviAII	CATG	4 cut(s)	60, 104, 131, 190
CviQI	GTAC	4 cut(s)	282, 389, 420, 653
DdeI	CTNAG	5 cut(s)	326, 367, 442, 706, 965
DpnI	GATC	5 cut(s)	50, 180, 536, 800, 897
DpnII	GATC	5 cut(s)	48, 178, 534, 798, 895
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	4 cut(s)	580, 608, 844, 872
Eco57I	CTGAAG	1 cut(s)	920
EcoO109I	RGGNCCY	2 cut(s)	580, 844
FaeI	CATG	4 cut(s)	63, 107, 134, 193
FaiI	YATR	9 cut(s)	61, 105, 132, 191, 216, 621, 885, 891, 977
FalI	AAGNNNNNCTT	4 cut(s)	11, 43, 141, 173
FaqI	GGGAC	3 cut(s)	245, 593, 857
FatI	CATG	4 cut(s)	59, 103, 130, 189
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	6 cut(s)	37, 167, 220, 335, 356, 972
FokI	GGATG	2 cut(s)	85, 273
Fsp4HI	GCNGC	6 cut(s)	37, 167, 220, 335, 356, 972
FspBI	CTAG	2 cut(s)	285, 938
GluI	GCNGC	6 cut(s)	37, 167, 220, 335, 356, 972
GsaI	CCCAGC	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	473, 737
HapII	CCGG	5 cut(s)	386, 410, 626, 674, 682
HgaI	GACGC	1 cut(s)	242
Hin1II	CATG	4 cut(s)	63, 107, 134, 193
HindIII	AAGCTT	2 cut(s)	20, 150
HinfI	GANTC	2 cut(s)	291, 314
HpaII	CCGG	5 cut(s)	386, 410, 626, 674, 682
HphI	GGTGA	2 cut(s)	511, 775
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	5 cut(s)	296, 319, 545, 809, 900
Hpy188III	TCNNGA	4 cut(s)	341, 462, 726, 981
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	4 cut(s)	365, 463, 727, 938
HpyCH4III	ACNGT	8 cut(s)	90, 281, 419, 523, 568, 652, 787, 832
HpyCH4V	TGCA	5 cut(s)	36, 166, 604, 868, 929
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 163, 219, 331
HpyF3I	CTNAG	5 cut(s)	326, 367, 442, 706, 965
Hsp92II	CATG	4 cut(s)	63, 107, 134, 193
Kzo9I	GATC	5 cut(s)	48, 178, 534, 798, 895
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	7 cut(s)	344, 399, 423, 624, 639, 687, 695
Lsp1109I	GCAGC	4 cut(s)	48, 178, 231, 983
LweI	GCATC	4 cut(s)	92, 346, 372, 916
MaeI	CTAG	2 cut(s)	285, 938
MaeIII	GTNAC	2 cut(s)	592, 856
MalI	GATC	5 cut(s)	50, 180, 536, 800, 897
MboI	GATC	5 cut(s)	48, 178, 534, 798, 895
MboII	GAAGA	5 cut(s)	356, 394, 397, 658, 661
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	3 cut(s)	48, 178, 895
MluCI	AATT	6 cut(s)	377, 457, 616, 721, 880, 916
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	4 cut(s)	475, 505, 739, 769
MnlI	CCTC	6 cut(s)	222, 251, 491, 569, 755, 833
MspI	CCGG	5 cut(s)	386, 410, 626, 674, 682
MspR9I	CCNGG	2 cut(s)	410, 674
MunI	CAATTG	1 cut(s)	377
MwoI	GCNNNNNNNGC	4 cut(s)	33, 163, 219, 331
NciI	CCSGG	2 cut(s)	410, 674
NdeII	GATC	5 cut(s)	48, 178, 534, 798, 895
NlaIII	CATG	4 cut(s)	63, 107, 134, 193
NlaIV	GGNNCC	2 cut(s)	581, 845
PfeI	GAWTC	1 cut(s)	291
PfoI	TCCNGGA	2 cut(s)	408, 672
PkrI	GCNGC	6 cut(s)	38, 168, 221, 336, 357, 973
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PpuMI	RGGWCCY	2 cut(s)	580, 844
PsiI	TTATAA	2 cut(s)	621, 885
Psp5II	RGGWCCY	2 cut(s)	580, 844
PspFI	CCCAGC	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	581, 845
PspPI	GGNCC	4 cut(s)	580, 608, 844, 872
PspPPI	RGGWCCY	2 cut(s)	580, 844
PsuI	RGATCY	3 cut(s)	48, 178, 895
RsaI	GTAC	4 cut(s)	283, 390, 421, 654
RsaNI	GTAC	4 cut(s)	282, 389, 420, 653
SatI	GCNGC	6 cut(s)	37, 167, 220, 335, 356, 972
Sau3AI	GATC	5 cut(s)	48, 178, 534, 798, 895
Sau96I	GGNCC	4 cut(s)	580, 608, 844, 872
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	2 cut(s)	410, 674
SfaNI	GCATC	4 cut(s)	92, 346, 372, 916
SinI	GGWCC	4 cut(s)	580, 608, 844, 872
SpeI	ACTAGT	1 cut(s)	284
Sse9I	AATT	6 cut(s)	377, 457, 616, 721, 880, 916
SsiI	CCGC	2 cut(s)	335, 355
SspMI	CTAG	2 cut(s)	285, 938
StyD4I	CCNGG	2 cut(s)	408, 672
TaaI	ACNGT	8 cut(s)	90, 281, 419, 523, 568, 652, 787, 832
TaqI	TCGA	5 cut(s)	123, 240, 289, 340, 982
TasI	AATT	6 cut(s)	377, 457, 616, 721, 880, 916
TauI	GCSGC	2 cut(s)	337, 358
TfiI	GAWTC	1 cut(s)	291
TscAI	CASTG	1 cut(s)	618
TseI	GCWGC	4 cut(s)	36, 166, 219, 971
TspDTI	ATGAA	3 cut(s)	17, 120, 147
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	618
VpaK11BI	GGWCC	4 cut(s)	580, 608, 844, 872
XapI	RAATTY	1 cut(s)	916
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	2 cut(s)	285, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.