Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0032079

Physical Location & Seq

Genomic Coordinates Forward (+)

25438665 .. 25439411

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00402980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCGGCGGACGGAGGGGCGCTTTCGATGTTTTCGGTTGTGGAGGATGTGCTTCAGCAGCACGGTACTAGTCGAATCGGAGATCTTGATTTAGTGGAGTCCGAAAAGCCGAGCAAGCCGCATCGAGAAGAAATGAGGCGGCTGGGTGGCTTAGAAGGGCAATTGATGCCGTTGTTTCTTGAGGGAGCTGCAGATTATTTTGGTTTGTGCAAGAAATACCATACCTTGGCCTTGGAGGGGTATGCTGCTGAAACAATTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

87

Amino Acids

9.45

Weight (kDa)

4.86

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032079)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_4G00311310 Rroxscaffold_6G00402980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AciI	CCGC	4 cut(s)	5, 8, 119, 139
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	226, 237
AhlI	ACTAGT	1 cut(s)	68
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	3 cut(s)	58, 188, 245
AspLEI	GCGC	1 cut(s)	22
BbvI	GCAGC	3 cut(s)	70, 175, 232
BceAI	ACGGC	1 cut(s)	154
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	23
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	6 cut(s)	6, 59, 119, 140, 189, 246
BlsI	GCNGC	6 cut(s)	7, 60, 120, 141, 190, 247
BmsI	GCATC	2 cut(s)	130, 156
BpuEI	CTTGAG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	225, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 237
BseDI	CCNNGG	2 cut(s)	225, 231
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	226, 237
BseXI	GCAGC	3 cut(s)	70, 175, 232
BseYI	CCCAGC	1 cut(s)	142
BshFI	GGCC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	226, 237
BsnI	GGCC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	4 cut(s)	5, 8, 119, 139
BspANI	GGCC	1 cut(s)	230
BspMAI	CTGCAG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	225, 231
BssMI	GATC	1 cut(s)	82
BssT1I	CCWWGG	2 cut(s)	225, 231
Bst4CI	ACNGT	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 115, 166
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	3 cut(s)	70, 175, 232
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	116
CfoI	GCGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	66
CviJI	RGCY	6 cut(s)	109, 118, 142, 150, 188, 230
CviKI_1	RGCY	6 cut(s)	109, 118, 142, 150, 188, 230
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	225, 231
Eco57I	CTGAAG	1 cut(s)	38
EcoT14I	CCWWGG	2 cut(s)	225, 231
ErhI	CCWWGG	2 cut(s)	225, 231
FaiI	YATR	2 cut(s)	222, 243
Fnu4HI	GCNGC	6 cut(s)	6, 59, 119, 140, 189, 246
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	6 cut(s)	6, 59, 119, 140, 189, 246
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	6 cut(s)	6, 59, 119, 140, 189, 246
GsaI	CCCAGC	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HinfI	GANTC	2 cut(s)	75, 98
Hpy188I	TCNGA	2 cut(s)	80, 103
Hpy188III	TCNNGA	3 cut(s)	86, 125, 179
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	191, 210
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 115, 166
HpyF3I	CTNAG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	1 cut(s)	128
Lsp1109I	GCAGC	3 cut(s)	70, 175, 232
LweI	GCATC	2 cut(s)	130, 156
MaeI	CTAG	1 cut(s)	69
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	140
MfeI	CAATTG	2 cut(s)	161, 255
MflI	RGATCY	1 cut(s)	82
MluCI	AATT	2 cut(s)	161, 255
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	5 cut(s)	8, 37, 129, 175, 229
MunI	CAATTG	2 cut(s)	161, 255
MwoI	GCNNNNNNNGC	3 cut(s)	58, 115, 166
NdeII	GATC	1 cut(s)	82
NmeAIII	GCCGAG	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	75
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	6 cut(s)	7, 60, 120, 141, 190, 247
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SatI	GCNGC	6 cut(s)	6, 59, 119, 140, 189, 246
Sau3AI	GATC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	107
SetI	ASST	2 cut(s)	190, 227
SfaNI	GCATC	2 cut(s)	130, 156
SfcI	CTRYAG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SpeI	ACTAGT	1 cut(s)	68
Sse9I	AATT	2 cut(s)	161, 255
SsiI	CCGC	4 cut(s)	5, 8, 119, 139
SspMI	CTAG	1 cut(s)	69
StyI	CCWWGG	2 cut(s)	225, 231
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	26, 73, 124
TasI	AATT	2 cut(s)	161, 255
TauI	GCSGC	3 cut(s)	8, 121, 142
TfiI	GAWTC	1 cut(s)	75
TseI	GCWGC	3 cut(s)	58, 188, 245
TspGWI	ACGGA	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.