Rroxscaffold_4G00315080

Methyltransferase-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
39270408 .. 39271352
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315080.1

Sequence Viewer

Length: 567 bp
ATGATGATTAAGCTTTGTATTATTATTGTTCTCAACCCATCATCACCTGATACCATTTTGAGTTACAAAGATAATGTGAATTCTAGTGTGGTTTTGTGCTTGGGTCTTTGGTTTGGTACGGTGCTCCTTTACATTGAGGGATGGAGCCGAAGTAGGGTAAGGCCAAAAGCTTTAAGTTTACTAGTTGGCGGTGGAGCTTTGCTTGGTTTCTTGAGAACCCAATTGGGTTTTCAGGTTGTGGATGTGGAAGCCGATGAGGAGGTGCTTGATGAAAATGGTAGTGACGTGGGTAGTGGCAATGATGTTCATACTAAATTTGATGTGATTATGGTTGATTTGGATTCATTTGATGTGATTATGGTTGATTTGGATTCAATTGATGCTAGGGATGGTCTAATTGCTCCGCCATTGGAGTTTGTTTGGAAGCATTTTCATTTGTCTATTATATCAGTTCTTTGTGATAATGGAATCCTTGCTATAAGTGTCATTCCTCCAAATACATCATTTTTCAGGACATTGATTGTCACGCCCCAAATTTCGAATAAAAAATTCAAATCCGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

20.7

Weight (kDa)

4.64

Isoelectric Point (pI)

28.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031039)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000115.1_g000019
rosa_roxburghii Rroxscaffold_4G00315080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 189, 404
AcsI RAATTY 4 cut(s) 79, 314, 534, 548
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 2 cut(s) 375, 553
AhlI ACTAGT 1 cut(s) 181
AjiI CACGTC 1 cut(s) 286
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AluBI AGCT 3 cut(s) 13, 170, 197
AluI AGCT 3 cut(s) 13, 170, 197
Alw21I GWGCWC 1 cut(s) 126
AoxI GGCC 1 cut(s) 161
ApoI RAATTY 4 cut(s) 79, 314, 534, 548
AsuHPI GGTGA 1 cut(s) 36
AsuII TTCGAA 1 cut(s) 539
Bbv12I GWGCWC 1 cut(s) 126
BccI CCATC 3 cut(s) 46, 135, 383
BcuI ACTAGT 1 cut(s) 181
BfaI CTAG 3 cut(s) 84, 182, 384
BmgBI CACGTC 1 cut(s) 286
BmiI GGNNCC 1 cut(s) 146
BmsI GCATC 1 cut(s) 370
Bpu14I TTCGAA 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 304
BseGI GGATG 3 cut(s) 146, 247, 394
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 272
BshFI GGCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 154
BsnI GGCC 1 cut(s) 163
Bsp119I TTCGAA 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 126
BspACI CCGC 2 cut(s) 189, 404
BspANI GGCC 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 304
Bst4CI ACNGT 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 539
BstF5I GGATG 3 cut(s) 146, 247, 394
BsuRI GGCC 1 cut(s) 163
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 3 cut(s) 146, 247, 394
Csp6I GTAC 1 cut(s) 117
CviJI RGCY 6 cut(s) 13, 147, 163, 170, 197, 251
CviKI_1 RGCY 6 cut(s) 13, 147, 163, 170, 197, 251
CviQI GTAC 1 cut(s) 117
EciI GGCGGA 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 79
FaiI YATR 5 cut(s) 309, 329, 359, 446, 479
FokI GGATG 3 cut(s) 153, 254, 401
FspBI CTAG 3 cut(s) 84, 182, 384
HaeIII GGCC 1 cut(s) 163
HindIII AAGCTT 2 cut(s) 11, 168
HinfI GANTC 3 cut(s) 341, 371, 468
HphI GGTGA 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 559
Hpy188III TCNNGA 2 cut(s) 211, 511
Hpy8I GTNNAC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 285
LmnI GCTCC 4 cut(s) 129, 144, 194, 406
LpnPI CCDG 3 cut(s) 60, 218, 496
LweI GCATC 1 cut(s) 370
MaeI CTAG 3 cut(s) 84, 182, 384
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 3 cut(s) 62, 281, 523
MfeI CAATTG 2 cut(s) 221, 375
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 7 cut(s) 79, 221, 314, 375, 396, 534, 548
MnlI CCTC 4 cut(s) 130, 250, 253, 501
MseI TTAA 2 cut(s) 9, 173
MunI CAATTG 2 cut(s) 221, 375
NlaIV GGNNCC 1 cut(s) 146
NmuCI GTSAC 2 cut(s) 281, 523
NspV TTCGAA 1 cut(s) 539
PfeI GAWTC 3 cut(s) 341, 371, 468
PspN4I GGNNCC 1 cut(s) 146
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SaqAI TTAA 2 cut(s) 9, 173
SduI GDGCHC 1 cut(s) 126
SetI ASST 7 cut(s) 15, 49, 172, 199, 237, 264, 288
SfaNI GCATC 1 cut(s) 370
SfuI TTCGAA 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SpeI ACTAGT 1 cut(s) 181
Sse9I AATT 7 cut(s) 79, 221, 314, 375, 396, 534, 548
SsiI CCGC 2 cut(s) 189, 404
SspMI CTAG 3 cut(s) 84, 182, 384
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 539
TasI AATT 7 cut(s) 79, 221, 314, 375, 396, 534, 548
TfiI GAWTC 3 cut(s) 341, 371, 468
Tru1I TTAA 2 cut(s) 9, 173
Tru9I TTAA 2 cut(s) 9, 173
TseFI GTSAC 2 cut(s) 281, 523
Tsp45I GTSAC 2 cut(s) 281, 523
TspDTI ATGAA 4 cut(s) 285, 296, 333, 422
XapI RAATTY 4 cut(s) 79, 314, 534, 548
XspI CTAG 3 cut(s) 84, 182, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.