Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0019848

Physical Location & Seq

Genomic Coordinates Forward (+)

40591390 .. 40591767

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAGAGGAACAGAGTCAATGACGACGCTGTTGGTTCGGCTGAAACAGCAAGTGAGGCAGAGCAAGAGGCTTTAATAAAAGTTGGCCATTTAACTGACAAGGCTTTTGCTAAGAGAACTGGAAGTAGTAAAATTGCTAAGGAGAAGAACGAAGAACTGTCATCTCAGGATACAGCGATGATGATACAAGGGAATTTCAGAGCTTATCTGATCCGTAGATCACAGGCTCTCCTGGCTCTTAGAGACCTGGCAGTTGCCAAGTCCAACCTGAAGGAGCTCAGAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006457 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0070417 GO:0070887 GO:0071310 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

95

Amino Acids

10.48

Weight (kDa)

9.1

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019848)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0335331
rosa_multiflora	Rmu_co8499669.1_g000001 Rmu_sc0003404.1_g000001 Rmu_sc0039742.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315980
rosa_samantha	Rh1BG112700 Rh1DG149500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	231, 246
AluBI	AGCT	2 cut(s)	203, 277
AluI	AGCT	2 cut(s)	203, 277
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	193
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
BalI	TGGCCA	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	233, 248
BciVI	GTATCC	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	233, 248
BmrFI	CCNGG	2 cut(s)	233, 248
Bpu10I	CCTNAGC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	233, 248
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	210, 218
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	210, 218
Bst2UI	CCWGG	2 cut(s)	233, 248
Bst4CI	ACNGT	1 cut(s)	159
BstDEI	CTNAG	5 cut(s)	111, 138, 165, 239, 278
BstKTI	GATC	2 cut(s)	213, 221
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	2 cut(s)	210, 218
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 56, 233
BstNI	CCWGG	2 cut(s)	233, 248
BstSCI	CCNGG	2 cut(s)	231, 246
BsuI	GTATCC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	191
CseI	GACGC	1 cut(s)	35
CviJI	RGCY	8 cut(s)	41, 71, 87, 104, 203, 227, 236, 277
CviKI_1	RGCY	8 cut(s)	41, 71, 87, 104, 203, 227, 236, 277
DdeI	CTNAG	5 cut(s)	111, 138, 165, 239, 278
DpnI	GATC	2 cut(s)	212, 220
DpnII	GATC	2 cut(s)	210, 218
EaeI	YGGCCR	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	231, 246
EcoT38I	GRGCYC	1 cut(s)	279
FaiI	YATR	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	87
HgaI	GACGC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	15
Hpy188I	TCNGA	3 cut(s)	200, 210, 281
Hpy188III	TCNNGA	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 56, 233
HpyF3I	CTNAG	5 cut(s)	111, 138, 165, 239, 278
Kzo9I	GATC	2 cut(s)	210, 218
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	8 cut(s)	105, 152, 209, 218, 233, 245, 260, 281
MalI	GATC	2 cut(s)	212, 220
MboI	GATC	2 cut(s)	210, 218
MboII	GAAGA	2 cut(s)	157, 164
MhlI	GDGCHC	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	2 cut(s)	132, 193
MluNI	TGGCCA	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	2 cut(s)	49, 61
Mox20I	TGGCCA	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	2 cut(s)	74, 92
Msp20I	TGGCCA	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	233, 248
MvaI	CCWGG	2 cut(s)	233, 248
MwoI	GCNNNNNNNGC	3 cut(s)	47, 56, 233
NdeII	GATC	2 cut(s)	210, 218
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	279
Psp6I	CCWGG	2 cut(s)	231, 246
PspGI	CCWGG	2 cut(s)	231, 246
SacI	GAGCTC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	74, 92
Sau3AI	GATC	2 cut(s)	210, 218
SchI	GAGTC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	233, 248
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	4 cut(s)	205, 249, 270, 279
Sse9I	AATT	2 cut(s)	132, 193
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	231, 246
TaaI	ACNGT	1 cut(s)	159
TasI	AATT	2 cut(s)	132, 193
Tru1I	TTAA	2 cut(s)	74, 92
Tru9I	TTAA	2 cut(s)	74, 92
TspGWI	ACGGA	1 cut(s)	203
XapI	RAATTY	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.