Rroxscaffold_4G00321520

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0025837
Physical Location & Seq
Reverse (-)
51129640 .. 51137650
8011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321520.1

Sequence Viewer

Length: 354 bp
ATGGTGTTTTTCCTCACCTCTGTCCAAAATTTACCGGTGAAGCATAGAAGATTGACTAGTTTCACCATGAATATTGCAGCAAGCATACCATCCTTTCCAGCAAGATTCATACTAATCCTTCTAGTAGTTCTTGGTTCTTGCAGTGTAGATTGCCACGCTAAGGATGATCATGCCCGTGAGCCTTCTTCCTGCGGCAACATCCACAACTTAAGTTACCCTTTCCGTCTCATTGATGATCCAAAGAAGTGTGGTAAATCAAGGTATAACCTGTCTTGTATGAGAACAATGTCACCGTATTACACTTGTATTCAGGAAAATACTCTGTGCTTGCCATCAATTATGGAAACTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

117

Amino Acids

13.22

Weight (kDa)

8.75

Isoelectric Point (pI)

69.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 62 - 103 4.7e-09 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025837)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_4G00321520 Rroxscaffold_5G00346310
rosa_samantha Rh1BG073000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 230
AcsI RAATTY 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 160
AflII CTTAAG 1 cut(s) 208
AgeI ACCGGT 1 cut(s) 34
AhlI ACTAGT 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 28
AsiGI ACCGGT 1 cut(s) 34
AsuHPI GGTGA 4 cut(s) 7, 49, 55, 282
BbvI GCAGC 1 cut(s) 89
BccI CCATC 2 cut(s) 97, 340
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 230
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 2 cut(s) 57, 122
BfrI CTTAAG 1 cut(s) 208
BisI GCNGC 2 cut(s) 78, 193
BlsI GCNGC 2 cut(s) 79, 194
Bpu10I CCTNAGC 1 cut(s) 159
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 34
BseGI GGATG 3 cut(s) 89, 169, 198
BseLI CCNNNNNNNGG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 89
BshTI ACCGGT 1 cut(s) 34
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 230
BsmBI CGTCTC 1 cut(s) 230
Bsp143I GATC 2 cut(s) 166, 235
BspACI CCGC 1 cut(s) 192
BspPI GGATC 1 cut(s) 230
BspTI CTTAAG 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssMI GATC 2 cut(s) 166, 235
Bst4CI ACNGT 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 82, 329
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 89, 169, 198
BstKTI GATC 2 cut(s) 169, 238
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 166, 235
BstV1I GCAGC 1 cut(s) 89
BtsCI GGATG 3 cut(s) 89, 169, 198
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 82, 329
Cfr10I RCCGGY 1 cut(s) 34
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 2 cut(s) 67, 170
CviJI RGCY 1 cut(s) 181
CviKI_1 RGCY 1 cut(s) 181
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 168, 237
DpnII GATC 2 cut(s) 166, 235
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 2 cut(s) 70, 173
FaiI YATR 9 cut(s) 45, 68, 86, 110, 171, 264, 278, 341, 352
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FatI CATG 2 cut(s) 66, 169
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 78, 193
FokI GGATG 3 cut(s) 76, 176, 185
Fsp4HI GCNGC 2 cut(s) 78, 193
FspBI CTAG 2 cut(s) 57, 122
GluI GCNGC 2 cut(s) 78, 193
HapII CCGG 1 cut(s) 35
Hin1II CATG 2 cut(s) 70, 173
HinfI GANTC 1 cut(s) 105
HpaII CCGG 1 cut(s) 35
HphI GGTGA 4 cut(s) 7, 49, 55, 282
Hpy188III TCNNGA 1 cut(s) 311
HpyAV CCTTC 2 cut(s) 128, 192
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4V TGCA 2 cut(s) 77, 141
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 2 cut(s) 70, 173
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 2 cut(s) 166, 235
LpnPI CCDG 5 cut(s) 48, 111, 202, 281, 296
Lsp1109I GCAGC 1 cut(s) 89
MaeI CTAG 2 cut(s) 57, 122
MaeIII GTNAC 2 cut(s) 212, 288
MalI GATC 2 cut(s) 168, 237
MboI GATC 2 cut(s) 166, 235
MboII GAAGA 2 cut(s) 60, 177
MluCI AATT 2 cut(s) 28, 336
MnlI CCTC 2 cut(s) 23, 28
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 174
MspCI CTTAAG 1 cut(s) 208
MspI CCGG 1 cut(s) 35
NdeII GATC 2 cut(s) 166, 235
NlaIII CATG 2 cut(s) 70, 173
NmuCI GTSAC 1 cut(s) 288
PfeI GAWTC 1 cut(s) 105
PinAI ACCGGT 1 cut(s) 34
PkrI GCNGC 2 cut(s) 79, 194
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 2 cut(s) 78, 193
Sau3AI GATC 2 cut(s) 166, 235
SetI ASST 3 cut(s) 20, 263, 270
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 2 cut(s) 28, 336
SsiI CCGC 1 cut(s) 192
SspI AATATT 1 cut(s) 73
SspMI CTAG 2 cut(s) 57, 122
TaaI ACNGT 1 cut(s) 294
TasI AATT 2 cut(s) 28, 336
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 288
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 288
TspDTI ATGAA 2 cut(s) 83, 97
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 1 cut(s) 148
Vha464I CTTAAG 1 cut(s) 208
XapI RAATTY 1 cut(s) 28
XspI CTAG 2 cut(s) 57, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.