Rh1BG073000

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0025837
Physical Location & Seq
Forward (+)
11272746 .. 11272973
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG073000.1

Sequence Viewer

Length: 228 bp
ATGCCAGCACGACTGGTCCTTCTACTTCTTGGTTTGTGCACTGTAGCTTCCCACGCTAAGGATGATCATCCCTGTGAGCCTTCTTCCTGCGGCGACATCCACAACATAAGTTACCCTTTCCGACTCAATGATGATCCAAGAAAGGGCGGTAAATTAAGGTATAACCAATCTTGTGAGAACAATGTCACTGTATACCACTCTCGAGATCAGGCTCGCGACGTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

75

Amino Acids

8.42

Weight (kDa)

6.88

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 25 - 67 1.9e-08 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025837)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_4G00321520 Rroxscaffold_5G00346310
rosa_samantha Rh1BG073000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 216
AciI CCGC 2 cut(s) 90, 147
AclWI GGATC 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 58, 143
AflIII ACRYGT 1 cut(s) 219
AjiI CACGTC 1 cut(s) 220
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 41
Alw44I GTGCAC 1 cut(s) 37
AlwI GGATC 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 41
BclI TGATCA 1 cut(s) 64
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 201
BmgBI CACGTC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 143
Bse1I ACTGG 1 cut(s) 18
Bse8I GATNNNNATC 1 cut(s) 66
BseGI GGATG 3 cut(s) 67, 67, 96
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 2 cut(s) 58, 143
BseNI ACTGG 1 cut(s) 18
BseSI GKGCMC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 58, 143
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 3 cut(s) 64, 133, 205
Bsp68I TCGCGA 1 cut(s) 216
BspACI CCGC 2 cut(s) 90, 147
BspFNI CGCG 1 cut(s) 216
BspPI GGATC 1 cut(s) 128
BsrI ACTGG 1 cut(s) 18
BssMI GATC 3 cut(s) 64, 133, 205
BssNAI GTATAC 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 43, 190
BstC8I GCNNGC 2 cut(s) 6, 214
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 3 cut(s) 67, 67, 96
BstFNI CGCG 1 cut(s) 216
BstKTI GATC 3 cut(s) 67, 136, 208
BstMBI GATC 3 cut(s) 64, 133, 205
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 41
BstUI CGCG 1 cut(s) 216
BstZ17I GTATAC 1 cut(s) 193
BtrI CACGTC 1 cut(s) 220
BtsCI GGATG 3 cut(s) 67, 67, 96
BtsIMutI CAGTG 2 cut(s) 39, 186
BtuMI TCGCGA 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 6, 214
Cfr13I GGNCC 1 cut(s) 16
CviJI RGCY 3 cut(s) 47, 79, 212
CviKI_1 RGCY 3 cut(s) 47, 79, 212
DdeI CTNAG 1 cut(s) 57
DpnI GATC 3 cut(s) 66, 135, 207
DpnII GATC 3 cut(s) 64, 133, 205
Eco47I GGWCC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 201
FaiI YATR 3 cut(s) 107, 162, 193
FalI AAGNNNNNCTT 2 cut(s) 100, 132
FbaI TGATCA 1 cut(s) 64
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 91
FokI GGATG 3 cut(s) 54, 74, 83
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
HinfI GANTC 1 cut(s) 123
Hpy166II GTNNAC 2 cut(s) 39, 193
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 3 cut(s) 201, 203, 215
Hpy8I GTNNAC 2 cut(s) 39, 193
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 29, 90
HpyCH4III ACNGT 2 cut(s) 43, 190
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 39
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 219
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 3 cut(s) 64, 133, 205
LpnPI CCDG 4 cut(s) 18, 85, 100, 194
MaeII ACGT 1 cut(s) 219
MaeIII GTNAC 2 cut(s) 110, 184
MalI GATC 3 cut(s) 66, 135, 207
MboI GATC 3 cut(s) 64, 133, 205
MboII GAAGA 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 1 cut(s) 152
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 145
MseI TTAA 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 72
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 3 cut(s) 64, 133, 205
NmuCI GTSAC 1 cut(s) 184
NruI TCGCGA 1 cut(s) 216
PaeR7I CTCGAG 1 cut(s) 201
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 16
RruI TCGCGA 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 72
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 3 cut(s) 64, 133, 205
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 1 cut(s) 117
SduI GDGCHC 1 cut(s) 41
SetI ASST 3 cut(s) 49, 161, 222
SfcI CTRYAG 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 1 cut(s) 152
SsiI CCGC 2 cut(s) 90, 147
TaaI ACNGT 2 cut(s) 43, 190
TaiI ACGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 202
TasI AATT 1 cut(s) 152
TauI GCSGC 1 cut(s) 93
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 2 cut(s) 46, 193
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspRI CASTG 2 cut(s) 46, 193
VneI GTGCAC 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 16
XhoI CTCGAG 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.