Rroxscaffold_4G00324510

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0023226
Physical Location & Seq
Forward (+)
55978351 .. 55978677
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324510.1

Sequence Viewer

Length: 327 bp
ATGTCACAAGAGTGGTTACAACTGGGTCCGGAGGATAGGATTCTTGAAAGTCCTGCAATGGTAAATATAAGGAGGACTTACGAAGATCTTGAGAGCTTGGAATTGAAGATGTGCTGCTTCTCTTTTTCAATCTTCCCCGATGATTCTGTGATGAAGAAGAGGCCTCTTATTTACTTTGGTGGATTGGCGAGGGCTTTATCAAAAGCAAAAGCACGCGCCTCCTCCTTTAGCAACTCGTTCTCCGACTTGAGCTGGTTCTCCGACCTAAGCCGCCTCGAGCTTGTTCTCCGACGTAGGTCCTCTCTATGTCTTCTAGCCTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

108

Amino Acids

12.35

Weight (kDa)

8.55

Isoelectric Point (pI)

81.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023226)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_4G00324510
rosa_samantha Rh1BG314100 Rh1CG329000 Rh1DG345700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 216
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 1 cut(s) 271
AgsI TTSAA 3 cut(s) 47, 106, 129
AleI CACNNNNGTG 1 cut(s) 10
AluBI AGCT 3 cut(s) 96, 252, 280
AluI AGCT 3 cut(s) 96, 252, 280
Ama87I CYCGRG 2 cut(s) 275, 319
Aor13HI TCCGGA 1 cut(s) 28
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 218
AspS9I GGNCC 2 cut(s) 26, 297
AvaI CYCGRG 2 cut(s) 275, 319
AvaII GGWCC 2 cut(s) 26, 297
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 101
BfaI CTAG 1 cut(s) 314
BglII AGATCT 1 cut(s) 85
BisI GCNGC 2 cut(s) 115, 271
BlsI GCNGC 2 cut(s) 116, 272
Bme18I GGWCC 2 cut(s) 26, 297
BmeT110I CYCGRG 2 cut(s) 275, 319
BmgT120I GGNCC 2 cut(s) 26, 297
BmiI GGNNCC 1 cut(s) 27
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
BoxI GACNNNNGTC 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 2 cut(s) 110, 268
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bse1I ACTGG 1 cut(s) 27
Bse3DI GCAATG 1 cut(s) 63
BseAI TCCGGA 1 cut(s) 28
BseMI GCAATG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 1 cut(s) 163
BsiHKCI CYCGRG 2 cut(s) 275, 319
BsiSI CCGG 1 cut(s) 29
BsnI GGCC 1 cut(s) 163
BsoBI CYCGRG 2 cut(s) 275, 319
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 271
BspANI GGCC 1 cut(s) 163
BspEI TCCGGA 1 cut(s) 28
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 27
BssMI GATC 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 266
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstPAI GACNNNNGTC 1 cut(s) 295
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 302
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BsuRI GGCC 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 26, 297
CviJI RGCY 7 cut(s) 96, 163, 194, 252, 270, 280, 317
CviKI_1 RGCY 7 cut(s) 96, 163, 194, 252, 270, 280, 317
DdeI CTNAG 1 cut(s) 266
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco147I AGGCCT 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 26, 297
Eco88I CYCGRG 2 cut(s) 275, 319
EcoO109I RGGNCCY 1 cut(s) 297
FaiI YATR 2 cut(s) 68, 307
FalI AAGNNNNNCTT 2 cut(s) 61, 93
Fnu4HI GCNGC 2 cut(s) 115, 271
Fsp4HI GCNGC 2 cut(s) 115, 271
FspBI CTAG 1 cut(s) 314
GlaI GCGC 1 cut(s) 217
GluI GCNGC 2 cut(s) 115, 271
HaeIII GGCC 1 cut(s) 163
HapII CCGG 1 cut(s) 29
HhaI GCGC 1 cut(s) 218
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 2 cut(s) 40, 143
HpaII CCGG 1 cut(s) 29
Hpy188I TCNGA 3 cut(s) 244, 262, 290
Hpy188III TCNNGA 3 cut(s) 29, 44, 89
Hpy99I CGWCG 1 cut(s) 294
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 292
HspAI GCGC 1 cut(s) 216
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 4 cut(s) 8, 42, 66, 238
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 1 cut(s) 314
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 3, 15
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 6 cut(s) 95, 118, 124, 166, 169, 302
MflI RGATCY 1 cut(s) 85
MluCI AATT 1 cut(s) 101
MmeI TCCRAC 3 cut(s) 267, 285, 313
MnlI CCTC 9 cut(s) 25, 66, 153, 174, 183, 229, 232, 284, 310
MroI TCCGGA 1 cut(s) 28
MslI CAYNNNNRTG 1 cut(s) 10
MspI CCGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 216
NdeII GATC 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 3
OliI CACNNNNGTG 1 cut(s) 10
PaeR7I CTCGAG 2 cut(s) 275, 319
PceI AGGCCT 1 cut(s) 163
PfeI GAWTC 2 cut(s) 40, 143
PkrI GCNGC 2 cut(s) 116, 272
PpuMI RGGWCCY 1 cut(s) 297
PshAI GACNNNNGTC 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 2 cut(s) 26, 297
PspPPI RGGWCCY 1 cut(s) 297
PspXI VCTCGAGB 2 cut(s) 275, 319
PsuI RGATCY 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 10
SatI GCNGC 2 cut(s) 115, 271
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 26, 297
SetI ASST 6 cut(s) 98, 254, 267, 282, 295, 299
Sfr274I CTCGAG 2 cut(s) 275, 319
SinI GGWCC 2 cut(s) 26, 297
SlaI CTCGAG 2 cut(s) 275, 319
SmiMI CAYNNNNRTG 1 cut(s) 10
SmlI CTYRAG 4 cut(s) 89, 247, 275, 319
SmoI CTYRAG 4 cut(s) 89, 247, 275, 319
Sse9I AATT 1 cut(s) 101
SseBI AGGCCT 1 cut(s) 163
SsiI CCGC 1 cut(s) 271
SspMI CTAG 1 cut(s) 314
StuI AGGCCT 1 cut(s) 163
TaiI ACGT 1 cut(s) 295
TaqI TCGA 2 cut(s) 276, 320
TasI AATT 1 cut(s) 101
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 2 cut(s) 40, 143
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 167
VpaK11BI GGWCC 2 cut(s) 26, 297
XhoI CTCGAG 2 cut(s) 275, 319
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.