Rh1DG345700

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0023226
Physical Location & Seq
Reverse (-)
56953418 .. 56954071
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG345700.1

Sequence Viewer

Length: 654 bp
ATGTCGAGCATAATAAATCCAGAAAAGTTCATGCCCAAGTTGCTGGATCTTCTAAAAAGAGCCGAGGCAGTGGCCCAAGAACCTGAAGCAGTTAAACGCTTTGAAAGTATTGAAGAAGAGCTTCAAAGCATGAAGGAAAAGGATTTGATAGCCAAAATCAAGCTTTTTGATCAAACTATGTTAAGGCAATTCACTGCCCTGGAACGCCGACTTGGCAAGATTATCTTGGGAGCTGATACCACTTACAGTGATGTCGCAGAAGTTAACAAGGCACTAGACCTCATGTTTAATGATATCAATCAAATAAAAGGATCAATCCATCTGGTGGACAAAATGCCCTCTCGTGAAAGCAGTCCAGAGTCACAGGTGCATTGGACTAATCCCGATCAGTTGGGTTTGGCTCCAAAAATGTCACAAGAGTGGTTACAACTGGGTCTGGAGGATAGGATTCTTGAAAGTCCTGCAATAGTAAATATAAGGAGGACTTATGAAGATCTTGAGAGCTTGGAATTGAAGATGTGCTGCCTCTCCTTTTCAATCTTCCCTGATGATTCTGTGATGAAGAAGAGGCCTCTTATTTACTGGTGGATTGGCGAGGGCTTTAAAAAGCACACAACAGAAGACTGCGGAAGACGTGGGAGAAGAAATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

217

Amino Acids

25.11

Weight (kDa)

5.78

Isoelectric Point (pI)

72.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023226)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_4G00324510
rosa_samantha Rh1BG314100 Rh1CG329000 Rh1DG345700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 325
AciI CCGC 1 cut(s) 627
AclWI GGATC 2 cut(s) 54, 319
AcuI CTGAAG 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 6 cut(s) 104, 113, 125, 455, 514, 537
AjiI CACGTC 1 cut(s) 635
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AleI CACNNNNGTG 1 cut(s) 418
AluBI AGCT 4 cut(s) 121, 163, 233, 504
AluI AGCT 4 cut(s) 121, 163, 233, 504
AlwI GGATC 2 cut(s) 54, 319
AoxI GGCC 2 cut(s) 72, 569
ApeKI GCWGC 1 cut(s) 522
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 73
BauI CACGAG 1 cut(s) 342
BbsI GAAGAC 2 cut(s) 627, 637
BbvI GCAGC 1 cut(s) 509
BccI CCATC 1 cut(s) 327
BciT130I CCWGG 1 cut(s) 200
BclI TGATCA 1 cut(s) 169
BfaI CTAG 1 cut(s) 275
BglI GCCNNNNNGGC 1 cut(s) 213
BglII AGATCT 1 cut(s) 493
BisI GCNGC 1 cut(s) 523
BlsI GCNGC 1 cut(s) 524
Bme1390I CCNGG 1 cut(s) 200
BmgBI CACGTC 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 440
BmuI ACTGGG 1 cut(s) 440
BpiI GAAGAC 2 cut(s) 627, 637
BpmI CTGGAG 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 63, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 2 cut(s) 435, 587
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 63, 198
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 325
BseNI ACTGG 2 cut(s) 435, 587
BseXI GCAGC 1 cut(s) 509
BshFI GGCC 2 cut(s) 74, 571
BslI CCNNNNNNNGG 1 cut(s) 325
BsnI GGCC 2 cut(s) 74, 571
Bsp143I GATC 5 cut(s) 46, 169, 311, 385, 493
BspACI CCGC 1 cut(s) 627
BspANI GGCC 2 cut(s) 74, 571
BspLI GGNNCC 1 cut(s) 402
BspPI GGATC 2 cut(s) 54, 319
BspQI GCTCTTC 1 cut(s) 111
BsrI ACTGG 2 cut(s) 435, 587
BssECI CCNNGG 2 cut(s) 63, 198
BssMI GATC 5 cut(s) 46, 169, 311, 385, 493
BssSI CACGAG 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 2 cut(s) 111, 560
BstKTI GATC 5 cut(s) 49, 172, 314, 388, 496
BstMBI GATC 5 cut(s) 46, 169, 311, 385, 493
BstMWI GCNNNNNNNGC 2 cut(s) 40, 213
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 509
BstV2I GAAGAC 2 cut(s) 627, 637
BstX2I RGATCY 2 cut(s) 46, 493
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 2 cut(s) 46, 493
BsuRI GGCC 2 cut(s) 74, 571
BtrI CACGTC 1 cut(s) 635
BtsI GCAGTG 2 cut(s) 75, 192
BtsIMutI CAGTG 3 cut(s) 75, 192, 253
Cfr13I GGNCC 1 cut(s) 73
CviAII CATG 3 cut(s) 31, 130, 283
DpnI GATC 5 cut(s) 48, 171, 313, 387, 495
DpnII GATC 5 cut(s) 46, 169, 311, 385, 493
DraI TTTAAA 1 cut(s) 604
Eam1104I CTCTTC 2 cut(s) 111, 560
EarI CTCTTC 2 cut(s) 111, 560
Eco147I AGGCCT 1 cut(s) 571
Eco32I GATATC 1 cut(s) 295
Eco57I CTGAAG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 295
FaeI CATG 3 cut(s) 34, 133, 286
FaiI YATR 7 cut(s) 11, 32, 131, 179, 284, 476, 489
FalI AAGNNNNNCTT 6 cut(s) 105, 137, 209, 241, 469, 501
FatI CATG 3 cut(s) 30, 129, 282
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 523
Fsp4HI GCNGC 1 cut(s) 523
FspBI CTAG 1 cut(s) 275
GluI GCNGC 1 cut(s) 523
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 2 cut(s) 74, 571
Hin1II CATG 3 cut(s) 34, 133, 286
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 3 cut(s) 359, 448, 551
HpaI GTTAAC 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 265, 328
Hpy188III TCNNGA 7 cut(s) 20, 344, 356, 383, 437, 452, 497
Hpy8I GTNNAC 2 cut(s) 265, 328
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 2 cut(s) 370, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 213
HpySE526I ACGT 1 cut(s) 634
Hsp92II CATG 3 cut(s) 34, 133, 286
Ksp22I TGATCA 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 265
Kzo9I GATC 5 cut(s) 46, 169, 311, 385, 493
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 2 cut(s) 230, 406
Lsp1109I GCAGC 1 cut(s) 509
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 3 cut(s) 360, 411, 423
MalI GATC 5 cut(s) 48, 171, 313, 387, 495
MboI GATC 5 cut(s) 46, 169, 311, 385, 493
MflI RGATCY 2 cut(s) 46, 493
MluCI AATT 2 cut(s) 188, 509
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 9 cut(s) 58, 290, 349, 433, 474, 536, 561, 582, 589
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 6 cut(s) 93, 182, 264, 288, 603, 652
MslI CAYNNNNRTG 1 cut(s) 418
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 40, 213
NdeII GATC 5 cut(s) 46, 169, 311, 385, 493
NlaIII CATG 3 cut(s) 34, 133, 286
NlaIV GGNNCC 1 cut(s) 402
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 2 cut(s) 360, 411
OliI CACNNNNGTG 1 cut(s) 418
PceI AGGCCT 1 cut(s) 571
PciSI GCTCTTC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 448, 551
PflMI CCANNNNNTGG 1 cut(s) 325
PkrI GCNGC 1 cut(s) 524
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 402
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 2 cut(s) 46, 493
RseI CAYNNNNRTG 1 cut(s) 418
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 6 cut(s) 93, 182, 264, 288, 603, 652
SatI GCNGC 1 cut(s) 523
Sau3AI GATC 5 cut(s) 46, 169, 311, 385, 493
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 200
SetI ASST 8 cut(s) 85, 123, 165, 235, 282, 369, 506, 637
SmiMI CAYNNNNRTG 1 cut(s) 418
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 2 cut(s) 188, 509
SseBI AGGCCT 1 cut(s) 571
SsiI CCGC 1 cut(s) 627
SspI AATATT 1 cut(s) 649
SspMI CTAG 1 cut(s) 275
StuI AGGCCT 1 cut(s) 571
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 637
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 188, 509
TfiI GAWTC 2 cut(s) 448, 551
Tru1I TTAA 6 cut(s) 93, 182, 264, 288, 603, 652
Tru9I TTAA 6 cut(s) 93, 182, 264, 288, 603, 652
TscAI CASTG 3 cut(s) 75, 199, 253
TseFI GTSAC 2 cut(s) 360, 411
TseI GCWGC 1 cut(s) 522
Tsp45I GTSAC 2 cut(s) 360, 411
TspDTI ATGAA 4 cut(s) 19, 146, 504, 575
TspRI CASTG 3 cut(s) 75, 199, 253
Van91I CCANNNNNTGG 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.