Rroxscaffold_5G00332910

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
309840 .. 310196
357 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00332910.1

Sequence Viewer

Length: 357 bp
ATGGATCCTCCTCAAAATCCCAATGTGAGTTCTTCTTCTTCTCGAAGACCCGATGTGGGTTTCTCTTCTTCTCCAAGACCCGAAGTGGGTTCTTCTTCTTCATCATCTTCTTTGAGCTTACCAAGATTTAGTCTTATCGTGATGATGGGCACCACACAGTCAATTACACCGCCTTCGGCTGCGAGAATCGACCCTACGGCTCGTGTGCCCAAGAAGGACGATGAAGCTCCCCAAGCACGAATTCGCTTCAAATGGTATCGAGAGTTTATTAGCCCTTTTATCCCCGAGAGACAAGATCAAGTGCTCGTCCACCCTAATGAGGTGGCCACCGTCCGTGTAATGGTTGTATCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.01

Weight (kDa)

9.96

Isoelectric Point (pI)

61.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022821)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0227201
rosa_roxburghii Rroxscaffold_5G00332910
rosa_rugosa Rorug07G0324700
rosa_samantha Rh6DG189500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 240
AfiI CCNNNNNNNGG 4 cut(s) 56, 86, 319, 340
AgsI TTSAA 1 cut(s) 250
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 2 cut(s) 117, 227
AluI AGCT 2 cut(s) 117, 227
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 240
AvaI CYCGRG 1 cut(s) 284
BaeGI GKGCMC 2 cut(s) 152, 210
BalI TGGCCA 1 cut(s) 326
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 149
BauI CACGAG 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 166
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 283
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 284
BmiI GGNNCC 2 cut(s) 6, 151
BpiI GAAGAC 1 cut(s) 52
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 86, 319, 340
BseLI CCNNNNNNNGG 4 cut(s) 56, 86, 319, 340
BseSI GKGCMC 2 cut(s) 152, 210
BseXI GCAGC 1 cut(s) 166
BshFI GGCC 1 cut(s) 326
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 284
BslI CCNNNNNNNGG 4 cut(s) 56, 86, 319, 340
BsmAI GTCTC 1 cut(s) 283
BsnI GGCC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 3 cut(s) 152, 210, 306
Bsp143I GATC 2 cut(s) 4, 295
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 326
BspLI GGNNCC 2 cut(s) 6, 151
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 149
BssMI GATC 2 cut(s) 4, 295
BssSI CACGAG 1 cut(s) 201
Bst2BI CACGAG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 159, 331
Bst6I CTCTTC 1 cut(s) 70
BstKTI GATC 2 cut(s) 7, 298
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 2 cut(s) 4, 295
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstSLI GKGCMC 2 cut(s) 152, 210
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 326
CviJI RGCY 6 cut(s) 117, 179, 200, 227, 273, 326
CviKI_1 RGCY 6 cut(s) 117, 179, 200, 227, 273, 326
DpnI GATC 2 cut(s) 6, 297
DpnII GATC 2 cut(s) 4, 295
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 180
Fsp4HI GCNGC 1 cut(s) 180
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 326
HinfI GANTC 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 310
Hpy188III TCNNGA 3 cut(s) 42, 139, 260
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 183, 208
HpyCH4III ACNGT 2 cut(s) 159, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
Kzo9I GATC 2 cut(s) 4, 295
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 166
MalI GATC 2 cut(s) 6, 297
MboI GATC 2 cut(s) 4, 295
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 152, 210, 306
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 3 cut(s) 162, 240, 352
MluNI TGGCCA 1 cut(s) 326
MnlI CCTC 3 cut(s) 18, 21, 313
Mox20I TGGCCA 1 cut(s) 326
MscI TGGCCA 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 315
Msp20I TGGCCA 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 2 cut(s) 4, 295
NlaIV GGNNCC 2 cut(s) 6, 151
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 6, 151
PsuI RGATCY 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 315
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 4, 295
SduI GDGCHC 3 cut(s) 152, 210, 306
SetI ASST 3 cut(s) 119, 229, 324
SmiMI CAYNNNNRTG 1 cut(s) 315
Sse9I AATT 3 cut(s) 162, 240, 352
SsiI CCGC 1 cut(s) 170
TaaI ACNGT 2 cut(s) 159, 331
TaqI TCGA 3 cut(s) 43, 189, 259
TasI AATT 3 cut(s) 162, 240, 352
TfiI GAWTC 1 cut(s) 186
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 90, 237
TspGWI ACGGA 1 cut(s) 323
XapI RAATTY 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.