Rroxscaffold_5G00351850

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
28544913 .. 28545689
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351850.1

Sequence Viewer

Length: 237 bp
ATGAGGTTCTCAAAATATGGGTTGGAGGTGGGCAAAATTGACATTCGAGATTGTGGTTTCATATCGTGGTGGGTGGCAAAAGCAGTTGGACCTCTACACTATCCAAAGGATTATGTGCCTACAGTGTTTGACAACATCGGTGCTAATTTGGTGGCGAATTCACGCTTAACCTTGGATTGTGGGACACCGCAGGTAATTGCTCGTGTGGGTGTTTGTGATTTAGTTCTTGAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.58

Weight (kDa)

6.52

Isoelectric Point (pI)

22.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024778)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0339251
rosa_roxburghii Rroxscaffold_5G00351850
rosa_samantha Rh1CG149700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 181
AciI CCGC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 157
AgsI TTSAA 1 cut(s) 230
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
ApoI RAATTY 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 89
AvaII GGWCC 1 cut(s) 89
BauI CACGAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 196
BspACI CCGC 1 cut(s) 188
BspMI ACCTGC 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 171
BssSI CACGAG 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 129
BveI ACCTGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 89
CviJI RGCY 1 cut(s) 233
CviKI_1 RGCY 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaiI YATR 3 cut(s) 18, 62, 114
FaqI GGGAC 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 231
Hpy188III TCNNGA 2 cut(s) 47, 227
HpyCH4III ACNGT 1 cut(s) 124
LpnPI CCDG 1 cut(s) 176
MluCI AATT 4 cut(s) 36, 145, 157, 195
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 2 cut(s) 19, 102
MseI TTAA 2 cut(s) 167, 235
PspPI GGNCC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 167, 235
Sau96I GGNCC 1 cut(s) 89
SetI ASST 6 cut(s) 8, 30, 94, 173, 195, 235
SfcI CTRYAG 1 cut(s) 120
SgeI CNNG 7 cut(s) 59, 78, 174, 184, 203, 213, 215
SinI GGWCC 1 cut(s) 89
Sse9I AATT 4 cut(s) 36, 145, 157, 195
SsiI CCGC 1 cut(s) 188
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 46
TasI AATT 4 cut(s) 36, 145, 157, 195
Tru1I TTAA 2 cut(s) 167, 235
Tru9I TTAA 2 cut(s) 167, 235
TscAI CASTG 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 49
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.