Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0022723

Physical Location & Seq

Genomic Coordinates Reverse (-)

45282539 .. 45284997

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00363990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAATTGATGGCAGCGGTAAACGCCGTCGTAAGAGCTTCAATATCCGATTTCTGTTATGAACTTACTGATTCTATACGATGTGAATTTGCTGCTAAAATAGTAGATGTTGAATCCTTGTGGGAAATCGAGAAGTTGAGATCTGAGTCTCAGAAGCAGCACACTGTTGTGAGTGGATTTTCATGTGCAAAGGGTTTACTATTAGAACATAAGCCAGCTGAGGAAGCTGCCGCCGTCATGCAGATACTACTAAACCAGAATTTAACTGATGCAAAGAAGTCCAAGATTGCGGTTGAACTTCAAAAGTTGGTTAGTGAGTGGCCATTAGAGTTTAGGTTATCAAGCGCCAAAAAGAAGAGGATAGGAAGCGATGCTATCAAAGACTGGATTAGAGGTGAGTGTAAATATGGAGGACCTAACCAGCAAAGAAGGCATTCTCTGTTGAAGTCCTTGGCGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.15

Weight (kDa)

8.67

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022723)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0421891
rosa_roxburghii	Rroxscaffold_5G00363990 Rroxscaffold_5G00364000
rosa_samantha	Rh4CG249900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	17, 231, 290, 455
AcoI	YGGCCR	1 cut(s)	320
AcsI	RAATTY	2 cut(s)	86, 259
AgsI	TTSAA	5 cut(s)	42, 113, 296, 302, 445
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	3 cut(s)	38, 218, 227
AluI	AGCT	3 cut(s)	38, 218, 227
Alw26I	GTCTC	1 cut(s)	153
AoxI	GGCC	1 cut(s)	320
ApeKI	GCWGC	4 cut(s)	14, 92, 157, 227
ApoI	RAATTY	2 cut(s)	86, 259
Asp700I	GAANNNNTTC	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	413
BalI	TGGCCA	1 cut(s)	322
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	26, 79, 169, 214
BccI	CCATC	1 cut(s)	4
BceAI	ACGGC	2 cut(s)	11, 218
BcoDI	GTCTC	1 cut(s)	153
BfoI	RGCGCY	1 cut(s)	348
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	5 cut(s)	15, 93, 158, 228, 231
BlsI	GCNGC	5 cut(s)	16, 94, 159, 229, 232
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmsI	GCATC	2 cut(s)	259, 361
Bpu10I	CCTNAGC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	450
Bse1I	ACTGG	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	450
BseMII	CTCAG	3 cut(s)	135, 164, 210
BseNI	ACTGG	1 cut(s)	389
BseXI	GCAGC	4 cut(s)	26, 79, 169, 214
BshFI	GGCC	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	4 cut(s)	17, 231, 290, 455
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	3 cut(s)	136, 163, 211
BsrI	ACTGG	1 cut(s)	389
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	144, 150, 219
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	1 cut(s)	143
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 224, 430
BstV1I	GCAGC	4 cut(s)	26, 79, 169, 214
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	413
CviAII	CATG	2 cut(s)	183, 238
CviJI	RGCY	5 cut(s)	38, 214, 218, 227, 322
CviKI_1	RGCY	5 cut(s)	38, 214, 218, 227, 322
DdeI	CTNAG	3 cut(s)	144, 150, 219
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	320
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	2 cut(s)	186, 241
FaiI	YATR	6 cut(s)	60, 77, 184, 210, 239, 408
FatI	CATG	2 cut(s)	182, 237
Fnu4HI	GCNGC	5 cut(s)	15, 93, 158, 228, 231
Fsp4HI	GCNGC	5 cut(s)	15, 93, 158, 228, 231
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	5 cut(s)	15, 93, 158, 228, 231
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	1 cut(s)	322
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	2 cut(s)	186, 241
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	3 cut(s)	71, 113, 146
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	22, 197
Hpy188I	TCNGA	4 cut(s)	49, 145, 153, 461
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	22, 197
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	188, 241, 272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 224, 430
HpyF3I	CTNAG	3 cut(s)	144, 150, 219
Hsp92II	CATG	2 cut(s)	186, 241
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	228, 269, 370, 434
Lsp1109I	GCAGC	4 cut(s)	26, 79, 169, 214
LweI	GCATC	2 cut(s)	259, 361
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	1 cut(s)	367
MflI	RGATCY	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	322
MluCI	AATT	3 cut(s)	5, 86, 259
MluNI	TGGCCA	1 cut(s)	322
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	4 cut(s)	214, 351, 386, 404
Mox20I	TGGCCA	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	322
MseI	TTAA	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	322
MspA1I	CMGCKG	2 cut(s)	17, 218
Mva1269I	GAATGC	1 cut(s)	433
MwoI	GCNNNNNNNGC	3 cut(s)	23, 224, 430
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	2 cut(s)	186, 241
OliI	CACNNNNGTG	1 cut(s)	167
PctI	GAATGC	1 cut(s)	433
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	2 cut(s)	71, 113
PkrI	GCNGC	5 cut(s)	16, 94, 159, 229, 232
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
PspPI	GGNCC	1 cut(s)	413
PspPPI	RGGWCCY	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	140
PvuII	CAGCTG	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	5 cut(s)	15, 93, 158, 228, 231
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	1 cut(s)	155
SetI	ASST	6 cut(s)	40, 220, 229, 338, 397, 418
SfaNI	GCATC	2 cut(s)	259, 361
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	5, 86, 259
SsiI	CCGC	4 cut(s)	17, 231, 290, 455
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	1 cut(s)	129
TasI	AATT	3 cut(s)	5, 86, 259
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	71, 113
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	4 cut(s)	14, 92, 157, 227
TspDTI	ATGAA	2 cut(s)	75, 171
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	86, 259
XmnI	GAANNNNTTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.