Rroxscaffold_5G00364000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0022723
Physical Location & Seq
Reverse (-)
45311347 .. 45314904
3558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364000.1

Sequence Viewer

Length: 282 bp
ATGGAATTCGCTGCTAAAATAGGAGATGTTGAATCCTTGTGGGAAATTGAGAAGTTGAGATCTGAGTCTCAGAAGCAGCACACTGTTGTGAGTGGATTTTCGTGTGCAAAGGGCTTACTATTAGAACATAAGCCTGAGGAAGCTGCGGCCGTCGTGCGGATATTACTAAACCAGAATTTAACTGATGCAAAGAAGTCGAAGATTGCGGTTGAACTTCAAAAGTTGGTTAGTGAGTGGCCATTAGAGGTTATCAAGCGCCAAAAAGAAGAGGATAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.6

Weight (kDa)

6.74

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022723)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0421891
rosa_roxburghii Rroxscaffold_5G00363990 Rroxscaffold_5G00364000
rosa_samantha Rh4CG249900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 146, 157, 206
AcoI YGGCCR 2 cut(s) 147, 236
AcsI RAATTY 2 cut(s) 5, 175
AfiI CCNNNNNNNGG 1 cut(s) 156
AgsI TTSAA 3 cut(s) 32, 212, 218
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 72
AoxI GGCC 2 cut(s) 147, 236
ApeKI GCWGC 3 cut(s) 11, 76, 143
ApoI RAATTY 2 cut(s) 5, 175
AspLEI GCGC 1 cut(s) 258
AxyI CCTNAGG 1 cut(s) 135
BalI TGGCCA 1 cut(s) 238
BbvI GCAGC 2 cut(s) 88, 130
BceAI ACGGC 1 cut(s) 134
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BcoDI GTCTC 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 259
BglII AGATCT 1 cut(s) 59
BisI GCNGC 4 cut(s) 12, 77, 144, 147
BlsI GCNGC 4 cut(s) 13, 78, 145, 148
BmsI GCATC 1 cut(s) 175
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse21I CCTNAGG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 3 cut(s) 54, 83, 126
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 2 cut(s) 88, 130
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 149, 238
BsiEI CGRYCG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 2 cut(s) 149, 238
Bsp143I GATC 1 cut(s) 59
BspACI CCGC 3 cut(s) 146, 157, 206
BspANI GGCC 2 cut(s) 149, 238
BspCNI CTCAG 3 cut(s) 55, 82, 127
BssMI GATC 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 261
BstDEI CTNAG 3 cut(s) 63, 69, 135
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 62
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 59
BstMCI CGRYCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 88, 130
BstX2I RGATCY 1 cut(s) 59
BstYI RGATCY 1 cut(s) 59
BstZI CGGCCG 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 135
BsuRI GGCC 2 cut(s) 149, 238
BtsIMutI CAGTG 1 cut(s) 81
CfoI GCGC 1 cut(s) 258
CviJI RGCY 5 cut(s) 114, 133, 143, 149, 238
CviKI_1 RGCY 5 cut(s) 114, 133, 143, 149, 238
DdeI CTNAG 3 cut(s) 63, 69, 135
DpnI GATC 1 cut(s) 61
DpnII GATC 1 cut(s) 59
EaeI YGGCCR 2 cut(s) 147, 236
EagI CGGCCG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EclXI CGGCCG 1 cut(s) 147
Eco52I CGGCCG 1 cut(s) 147
Eco81I CCTNAGG 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 5
FaiI YATR 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 12, 77, 144, 147
Fsp4HI GCNGC 4 cut(s) 12, 77, 144, 147
GlaI GCGC 1 cut(s) 257
GluI GCNGC 4 cut(s) 12, 77, 144, 147
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 2 cut(s) 149, 238
HhaI GCGC 1 cut(s) 258
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 2 cut(s) 32, 65
Hpy188I TCNGA 2 cut(s) 64, 72
Hpy99I CGWCG 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 107, 188
HpyF3I CTNAG 3 cut(s) 63, 69, 135
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 59
LpnPI CCDG 2 cut(s) 147, 185
Lsp1109I GCAGC 2 cut(s) 88, 130
LweI GCATC 1 cut(s) 175
MalI GATC 1 cut(s) 61
MboI GATC 1 cut(s) 59
MboII GAAGA 2 cut(s) 211, 278
MflI RGATCY 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 238
MluCI AATT 3 cut(s) 5, 45, 175
MluNI TGGCCA 1 cut(s) 238
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 3 cut(s) 130, 238, 262
Mox20I TGGCCA 1 cut(s) 238
MscI TGGCCA 1 cut(s) 238
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 238
NdeII GATC 1 cut(s) 59
OliI CACNNNNGTG 1 cut(s) 86
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 4 cut(s) 13, 78, 145, 148
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PsuI RGATCY 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 4 cut(s) 12, 77, 144, 147
Sau3AI GATC 1 cut(s) 59
SchI GAGTC 1 cut(s) 74
SetI ASST 2 cut(s) 145, 249
SfaNI GCATC 1 cut(s) 175
SgeI CNNG 6 cut(s) 49, 114, 146, 166, 184, 265
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 3 cut(s) 5, 45, 175
SsiI CCGC 3 cut(s) 146, 157, 206
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 197
TasI AATT 3 cut(s) 5, 45, 175
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TscAI CASTG 1 cut(s) 88
TseI GCWGC 3 cut(s) 11, 76, 143
TspRI CASTG 1 cut(s) 88
XapI RAATTY 2 cut(s) 5, 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.