Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0022742

Physical Location & Seq

Genomic Coordinates Forward (+)

58712630 .. 58714960

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00378230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCTGCTGGAGTGCTGAATAATATAGCTGCAGGAACCTTAAGCGACACCAAGGTGGTCATTGAGCATTCAGCAATACCAGGGTTTGTGAAGCTGCTTGCTTCACCATTTGATTTTGTTAAGAAGGAGGCCATGTTTGCTTTGGGAAATATTGCTGCGGCATCTCCTAAATATCAGTATCTTCTCCTCAGAAGAGGAGTCTTGATGCTACTGCAGGACCAGGTGAACCATTGGAATGTAGAGCTTTCCACGCTCAGAATTGCCACTTGGACGATGGCCGCCTTATTCATGGACCACCCACATACTAATGTGAAAGAGGTACAGCCAGCTGTTCCATCTCTTATCCGTTTGGTTCAATCACATGATGATGAAGAAGTCTTGGCATATGCATGCTGGGCAATCTCGTATCACTTAGAGACCGGCGTTGGGATTTCTCATGCTCTTAAGAACCTCGTCCAGCGACTTGTGCAGCTTCTCTTACATCCATCTTCTTCAGTTCTCAAAGCCGCACTTCGCTGTGTCTGTAATTTGACAAAATATGGGATTGAGCATATTATTACAGCAGGTGCGCTTCCACACCTTCAAAGCTTGTTAACTGGTAATCATCAAAACATAATCAAGAGTCAAGTTTGCTGGATTATCGCAATGCTTGCTGCTGAGCCCCAGATGAGATTACATCTTCTGTTTGAAGTCGGTCTAGTTGGCTCTATGGTGAATTTGCTTCAAAATCAAACCCCTGCCTACTCTGAGACAAAGAAATGGGCTGTTACGGCCATTGCAAATATTGTTGACTTCGGCCAGATTCACCATATCAGGACCCTGGTGGATGCAGGCTGCATCAAACCAATGGTTGATGTTCTTGCTTGCAGTGACGTACATGCCTTAACTTTTTGCCTACATGGGTTATATGCGATTGGGTGGTGGCCGGGAGTGGTGAAGGCTTACAGATTACAGGAGCTGATTTGCGAGTTATTTAATGAGGCTGAAGGTATGAGTAAGACCTCAAAGCTGGTTGCTCACCAAAACAAAGAGATCTCTTCGCTGGCAGGTCGTGTTCTGGAAGTCTATCAGACCCGCTCTTTGGAGTATATCTTTGTTCGGCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_3 IBB

Protein Analysis

369

Amino Acids

40.9

Weight (kDa)

7.69

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022742)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0437171
rosa_roxburghii	Rroxscaffold_5G00378230
rosa_samantha	Rh4AG353400 Rh4DG357200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	554
Acc36I	ACCTGC	2 cut(s)	554, 1037
AccBSI	CCGCTC	1 cut(s)	1077
AciI	CCGC	4 cut(s)	158, 279, 507, 1075
AcoI	YGGCCR	4 cut(s)	276, 771, 796, 923
AcsI	RAATTY	1 cut(s)	715
AcuI	CTGAAG	2 cut(s)	477, 1005
AfaI	GTAC	2 cut(s)	321, 876
AfiI	CCNNNNNNNGG	2 cut(s)	426, 1081
AflII	CTTAAG	2 cut(s)	40, 443
AgsI	TTSAA	4 cut(s)	356, 584, 689, 725
AjnI	CCWGG	3 cut(s)	79, 219, 819
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AleI	CACNNNNGTG	1 cut(s)	53
AluBI	AGCT	8 cut(s)	29, 94, 244, 329, 472, 588, 958, 1009
AluI	AGCT	8 cut(s)	29, 94, 244, 329, 472, 588, 958, 1009
Alw26I	GTCTC	2 cut(s)	410, 743
AlwNI	CAGNNNCTG	1 cut(s)	958
AoxI	GGCC	6 cut(s)	129, 276, 771, 796, 923, 1100
ApeKI	GCWGC	7 cut(s)	5, 29, 94, 155, 469, 653, 834
ApoI	RAATTY	1 cut(s)	715
ArsI	GACNNNNNNTTYG	2 cut(s)	1063, 1095
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	4 cut(s)	217, 292, 816, 1101
AsuC2I	CCSGG	1 cut(s)	927
AsuHPI	GGTGA	6 cut(s)	96, 235, 724, 797, 946, 1010
AvaII	GGWCC	3 cut(s)	217, 292, 816
BanII	GRGCYC	1 cut(s)	663
BbvI	GCAGC	6 cut(s)	16, 81, 142, 481, 640, 821
BccI	CCATC	3 cut(s)	268, 343, 493
BceAI	ACGGC	1 cut(s)	786
BciT130I	CCWGG	3 cut(s)	81, 221, 821
BcnI	CCSGG	1 cut(s)	927
BcoDI	GTCTC	2 cut(s)	410, 743
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	2 cut(s)	30, 212
BfrI	CTTAAG	2 cut(s)	40, 443
BfuAI	ACCTGC	2 cut(s)	554, 1037
BglII	AGATCT	1 cut(s)	1032
BlpI	GCTNAGC	1 cut(s)	657
Bme1390I	CCNGG	4 cut(s)	81, 221, 821, 927
Bme18I	GGWCC	3 cut(s)	217, 292, 816
BmgT120I	GGNCC	4 cut(s)	217, 292, 816, 1101
BmiI	GGNNCC	2 cut(s)	37, 818
BmrFI	CCNGG	4 cut(s)	81, 221, 821, 927
BmsI	GCATC	4 cut(s)	170, 195, 817, 846
BpmI	CTGGAG	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	657
BpuMI	CCSGG	1 cut(s)	927
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	3 cut(s)	51, 80, 819
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 1081
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	601
Bse3DI	GCAATG	2 cut(s)	651, 774
BseBI	CCWGG	3 cut(s)	81, 221, 821
BseDI	CCNNGG	3 cut(s)	51, 80, 819
BseGI	GGATG	2 cut(s)	481, 832
BseLI	CCNNNNNNNGG	2 cut(s)	426, 1081
BseMI	GCAATG	2 cut(s)	651, 774
BseMII	CTCAG	4 cut(s)	202, 268, 648, 738
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	176, 210
BseXI	GCAGC	6 cut(s)	16, 81, 142, 481, 640, 821
BseYI	CCCAGC	1 cut(s)	393
BsgI	GTGCAG	1 cut(s)	488
BshFI	GGCC	6 cut(s)	131, 278, 773, 798, 925, 1102
BsiSI	CCGG	2 cut(s)	420, 926
BslI	CCNNNNNNNGG	2 cut(s)	426, 1081
BsmAI	GTCTC	2 cut(s)	410, 743
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	6 cut(s)	131, 278, 773, 798, 925, 1102
Bso31I	GGTCTC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp143I	GATC	1 cut(s)	1032
Bsp1720I	GCTNAGC	1 cut(s)	657
BspACI	CCGC	4 cut(s)	158, 279, 507, 1075
BspANI	GGCC	6 cut(s)	131, 278, 773, 798, 925, 1102
BspCNI	CTCAG	4 cut(s)	201, 267, 649, 739
BspLI	GGNNCC	2 cut(s)	37, 818
BspMAI	CTGCAG	2 cut(s)	34, 216
BspMI	ACCTGC	2 cut(s)	554, 1037
BspTI	CTTAAG	2 cut(s)	40, 443
BspTNI	GGTCTC	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	1077
BsrDI	GCAATG	2 cut(s)	651, 774
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	601
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	51, 80, 819
BssMI	GATC	1 cut(s)	1032
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	3 cut(s)	81, 221, 821
Bst6I	CTCTTC	2 cut(s)	187, 1042
BstAFI	CTTAAG	2 cut(s)	40, 443
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstC8I	GCNNGC	7 cut(s)	99, 327, 391, 651, 832, 865, 1044
BstDEI	CTNAG	5 cut(s)	188, 254, 412, 657, 747
BstF5I	GGATG	2 cut(s)	481, 832
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	1 cut(s)	1035
BstMAI	GTCTC	2 cut(s)	410, 743
BstMBI	GATC	1 cut(s)	1032
BstMWI	GCNNNNNNNGC	6 cut(s)	137, 250, 395, 466, 650, 770
BstNI	CCWGG	3 cut(s)	81, 221, 821
BstNSI	RCATGY	2 cut(s)	393, 881
BstSCI	CCNGG	4 cut(s)	79, 219, 819, 925
BstSFI	CTRYAG	2 cut(s)	30, 212
BstV1I	GCAGC	6 cut(s)	16, 81, 142, 481, 640, 821
BstX2I	RGATCY	1 cut(s)	1032
BstYI	RGATCY	1 cut(s)	1032
BsuRI	GGCC	6 cut(s)	131, 278, 773, 798, 925, 1102
BtsCI	GGATG	2 cut(s)	481, 832
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	1 cut(s)	874
BveI	ACCTGC	2 cut(s)	554, 1037
Cac8I	GCNNGC	7 cut(s)	99, 327, 391, 651, 832, 865, 1044
CaiI	CAGNNNCTG	1 cut(s)	958
CfoI	GCGC	1 cut(s)	571
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	4 cut(s)	217, 292, 816, 1101
CsiI	ACCWGGT	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	320, 875
CviAII	CATG	7 cut(s)	133, 289, 362, 390, 437, 878, 899
CviQI	GTAC	2 cut(s)	320, 875
DdeI	CTNAG	5 cut(s)	188, 254, 412, 657, 747
DpnI	GATC	1 cut(s)	1034
DpnII	GATC	1 cut(s)	1032
EaeI	YGGCCR	4 cut(s)	276, 771, 796, 923
Eam1104I	CTCTTC	2 cut(s)	187, 1042
EarI	CTCTTC	2 cut(s)	187, 1042
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	663
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	3 cut(s)	217, 292, 816
Eco57I	CTGAAG	2 cut(s)	477, 1005
EcoO109I	RGGNCCY	1 cut(s)	816
EcoRII	CCWGG	3 cut(s)	79, 219, 819
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	663
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	7 cut(s)	136, 292, 365, 393, 440, 881, 902
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	7 cut(s)	132, 288, 361, 389, 436, 877, 898
FauI	CCCGC	1 cut(s)	1082
FauNDI	CATATG	1 cut(s)	385
FokI	GGATG	2 cut(s)	468, 839
FriOI	GRGCYC	1 cut(s)	663
FspBI	CTAG	1 cut(s)	698
GlaI	GCGC	1 cut(s)	570
GsaI	CCCAGC	1 cut(s)	397
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	6 cut(s)	131, 278, 773, 798, 925, 1102
HapII	CCGG	2 cut(s)	420, 926
HhaI	GCGC	1 cut(s)	571
Hin1II	CATG	7 cut(s)	136, 292, 365, 393, 440, 881, 902
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HincII	GTYRAC	2 cut(s)	594, 790
HindII	GTYRAC	2 cut(s)	594, 790
HindIII	AAGCTT	1 cut(s)	586
HinfI	GANTC	3 cut(s)	198, 622, 802
HpaI	GTTAAC	1 cut(s)	594
HpaII	CCGG	2 cut(s)	420, 926
HphI	GGTGA	6 cut(s)	96, 235, 724, 797, 946, 1010
Hpy166II	GTNNAC	3 cut(s)	226, 594, 790
Hpy188I	TCNGA	4 cut(s)	191, 257, 748, 1071
Hpy188III	TCNNGA	4 cut(s)	202, 619, 814, 1058
Hpy8I	GTNNAC	3 cut(s)	226, 594, 790
HpyAV	CCTTC	4 cut(s)	118, 590, 931, 980
HpyCH4IV	ACGT	1 cut(s)	873
HpyCH4V	TGCA	8 cut(s)	32, 214, 389, 469, 779, 830, 837, 867
HpyF10VI	GCNNNNNNNGC	6 cut(s)	137, 250, 395, 466, 650, 770
HpyF3I	CTNAG	5 cut(s)	188, 254, 412, 657, 747
HpySE526I	ACGT	1 cut(s)	873
Hsp92II	CATG	7 cut(s)	136, 292, 365, 393, 440, 881, 902
HspAI	GCGC	1 cut(s)	569
KspAI	GTTAAC	1 cut(s)	594
Kzo9I	GATC	1 cut(s)	1032
LmnI	GCTCC	1 cut(s)	955
Lsp1109I	GCAGC	6 cut(s)	16, 81, 142, 481, 640, 821
LweI	GCATC	4 cut(s)	170, 195, 817, 846
MabI	ACCWGGT	1 cut(s)	219
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	1 cut(s)	873
MaeIII	GTNAC	2 cut(s)	766, 869
MalI	GATC	1 cut(s)	1034
MbiI	CCGCTC	1 cut(s)	1077
MboI	GATC	1 cut(s)	1032
MboII	GAAGA	7 cut(s)	173, 204, 383, 480, 483, 671, 1029
MflI	RGATCY	1 cut(s)	1032
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	3 cut(s)	258, 526, 715
MlyI	GAGTC	2 cut(s)	207, 631
MnlI	CCTC	7 cut(s)	121, 188, 197, 310, 461, 973, 1012
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	6 cut(s)	41, 120, 444, 593, 884, 975
MslI	CAYNNNNRTG	5 cut(s)	53, 234, 306, 366, 388
MspA1I	CMGCKG	1 cut(s)	329
MspCI	CTTAAG	2 cut(s)	40, 443
MspI	CCGG	2 cut(s)	420, 926
MspR9I	CCNGG	4 cut(s)	81, 221, 821, 927
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	3 cut(s)	81, 221, 821
MwoI	GCNNNNNNNGC	6 cut(s)	137, 250, 395, 466, 650, 770
NciI	CCSGG	1 cut(s)	927
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	1 cut(s)	1032
NlaIII	CATG	7 cut(s)	136, 292, 365, 393, 440, 881, 902
NlaIV	GGNNCC	2 cut(s)	37, 818
NmuCI	GTSAC	1 cut(s)	869
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	2 cut(s)	393, 881
OliI	CACNNNNGTG	1 cut(s)	53
PaeI	GCATGC	1 cut(s)	393
PaqCI	CACCTGC	1 cut(s)	554
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	802
PleI	GAGTC	2 cut(s)	206, 630
PpsI	GAGTC	2 cut(s)	206, 630
PpuMI	RGGWCCY	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	816
Psp6I	CCWGG	3 cut(s)	79, 219, 819
PspFI	CCCAGC	1 cut(s)	393
PspGI	CCWGG	3 cut(s)	79, 219, 819
PspN4I	GGNNCC	2 cut(s)	37, 818
PspPI	GGNCC	4 cut(s)	217, 292, 816, 1101
PspPPI	RGGWCCY	1 cut(s)	816
PstI	CTGCAG	2 cut(s)	34, 216
PstNI	CAGNNNCTG	1 cut(s)	958
PsuI	RGATCY	1 cut(s)	1032
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	321, 876
RsaNI	GTAC	2 cut(s)	320, 875
RseI	CAYNNNNRTG	5 cut(s)	53, 234, 306, 366, 388
SaqAI	TTAA	6 cut(s)	41, 120, 444, 593, 884, 975
Sau3AI	GATC	1 cut(s)	1032
Sau96I	GGNCC	4 cut(s)	217, 292, 816, 1101
SchI	GAGTC	2 cut(s)	207, 631
ScrFI	CCNGG	4 cut(s)	81, 221, 821, 927
SduI	GDGCHC	1 cut(s)	663
SexAI	ACCWGGT	1 cut(s)	219
SfaNI	GCATC	4 cut(s)	170, 195, 817, 846
SfcI	CTRYAG	2 cut(s)	30, 212
SinI	GGWCC	3 cut(s)	217, 292, 816
SmiMI	CAYNNNNRTG	5 cut(s)	53, 234, 306, 366, 388
SmlI	CTYRAG	2 cut(s)	40, 443
SmoI	CTYRAG	2 cut(s)	40, 443
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	3 cut(s)	258, 526, 715
SsiI	CCGC	4 cut(s)	158, 279, 507, 1075
SspI	AATATT	2 cut(s)	151, 784
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	4 cut(s)	79, 219, 819, 925
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	876
TaqII	GACCGA	1 cut(s)	683
TasI	AATT	3 cut(s)	258, 526, 715
TauI	GCSGC	3 cut(s)	161, 281, 509
TfiI	GAWTC	1 cut(s)	802
Tru1I	TTAA	6 cut(s)	41, 120, 444, 593, 884, 975
Tru9I	TTAA	6 cut(s)	41, 120, 444, 593, 884, 975
TscAI	CASTG	1 cut(s)	874
TseFI	GTSAC	1 cut(s)	869
TseI	GCWGC	7 cut(s)	5, 29, 94, 155, 469, 653, 834
Tsp45I	GTSAC	1 cut(s)	869
TspDTI	ATGAA	2 cut(s)	277, 384
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	874
Vha464I	CTTAAG	2 cut(s)	40, 443
VpaK11BI	GGWCC	3 cut(s)	217, 292, 816
XapI	RAATTY	1 cut(s)	715
XceI	RCATGY	2 cut(s)	393, 881
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 271
XspI	CTAG	1 cut(s)	698
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.