Rroxscaffold_6G00391160

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0024916
Physical Location & Seq
Forward (+)
7596194 .. 7605740
9547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391160.1

Sequence Viewer

Length: 909 bp
ATGGATAAATATCCAGTTTTGGAGCCGATAGACAATGATATGAAAGGGATTGTGACCGAACTGTTACACTTGTTTGAAGGTTGTTGTCCACAGAATGCTATTTTGCTATTTGGGCCACCAGGAGCAGGAAAAGCCATGATTGCTAAAGCTTTGGCCATAGAGGCCAAAGCTGTGCTTTTTCAACTCTCCCCATCTTCAATTGTTAAATGGGGTGAGGATACCGTGCACGCATTGTTTGCTGTTGCTCAATGCTCTAGGCCTGCTGTGGTCTTTTTGGAGGATATTGACGCCCTACTGCCATATCTTCGTTGTTGGGATAATTGGCTTGCTGATCAAATCCTGGTTATCGGTTCCACTAGTAGACCGGAGCAGCTAGATGCTGCAACCTTGACAAGGTTCAGGGAGAGGTGGTACATTCCATTACCTACCAAGGGGAAAAGAGTGCTGCTGCTGAAGAAGTTCCTTCAAAACAATGAAATTTGTACTTTTACGGATGAGGAAATTGAAGAGGTATCCTCCTTTACCGAAGGATACAGCGTGGAGGATATTATCTCTGTCATTCATATGGCTGCAGTTCGTGCCAACCAGCGTGCGGGGAGATCGGCTGTGATTCAATTTATGGATTGTGGCGATGCTTTAATTCATTCAAAACCTCGTTTCTCGGAGGAAGAGATCTCTAGCATAGAAAACTGGATGTCCAGGACACGATTCAAAGTGGGTTCTTTTCGCCTCAATCCCCTCTTGAGGTTTGTGGAAGAATTGGAGCATGAAACGAGCTGTGGAGGGCGGTACAAGGCCGAGATGTTGTACGGTGGAACTCGCTATCGCCTCAAATCGCCGGCTTGGTTCTCCCAGCTCCGCCACTATAGCTCGAGATCCTTGAGGGCTTTTCTAGCCCAGAAGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

302

Amino Acids

34.26

Weight (kDa)

6.61

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 34 - 141 3.9e-16 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024916)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0494301
rosa_roxburghii Rroxscaffold_6G00391160
rosa_samantha Rh3AG314500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 361
AciI CCGC 3 cut(s) 593, 787, 859
AclWI GGATC 1 cut(s) 870
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 477
AcuI CTGAAG 1 cut(s) 473
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 4 cut(s) 413, 484, 791, 809
AfiI CCNNNNNNNGG 5 cut(s) 125, 393, 431, 592, 744
AgsI TTSAA 8 cut(s) 77, 182, 198, 467, 506, 614, 648, 712
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 3 cut(s) 118, 339, 698
AluBI AGCT 6 cut(s) 149, 170, 373, 777, 856, 870
AluI AGCT 6 cut(s) 149, 170, 373, 777, 856, 870
Alw21I GWGCWC 1 cut(s) 228
Alw44I GTGCAC 1 cut(s) 224
AlwI GGATC 1 cut(s) 870
Ama87I CYCGRG 1 cut(s) 871
AoxI GGCC 5 cut(s) 113, 153, 162, 257, 795
ApaLI GTGCAC 1 cut(s) 224
ApeKI GCWGC 5 cut(s) 370, 380, 445, 448, 569
ApoI RAATTY 1 cut(s) 477
Asp700I GAANNNNTTC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 871
BaeGI GKGCMC 1 cut(s) 228
BalI TGGCCA 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 5 cut(s) 367, 382, 432, 435, 556
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 3 cut(s) 120, 341, 700
BciVI GTATCC 3 cut(s) 211, 523, 524
BclI TGATCA 1 cut(s) 331
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 5 cut(s) 255, 357, 374, 678, 893
BfmI CTRYAG 2 cut(s) 570, 865
BfuI GTATCC 3 cut(s) 211, 523, 524
BglI GCCNNNNNGGC 1 cut(s) 161
BglII AGATCT 1 cut(s) 672
BisI GCNGC 5 cut(s) 371, 381, 446, 449, 570
BlsI GCNGC 5 cut(s) 372, 382, 447, 450, 571
Bme1390I CCNGG 3 cut(s) 120, 341, 700
BmeT110I CYCGRG 1 cut(s) 871
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 24, 352
BmrFI CCNGG 3 cut(s) 120, 341, 700
BmsI GCATC 2 cut(s) 367, 622
BplI GAGNNNNNCTC 2 cut(s) 500, 532
BpuEI CTTGAG 2 cut(s) 763, 901
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 429
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 393, 431, 592, 744
Bse118I RCCGGY 1 cut(s) 838
Bse1I ACTGG 2 cut(s) 14, 695
Bse8I GATNNNNATC 1 cut(s) 9
BseBI CCWGG 3 cut(s) 120, 341, 700
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 2 cut(s) 499, 699
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 5 cut(s) 125, 393, 431, 592, 744
BseNI ACTGG 2 cut(s) 14, 695
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 5 cut(s) 367, 382, 432, 435, 556
BseYI CCCAGC 1 cut(s) 852
BshFI GGCC 5 cut(s) 115, 155, 164, 259, 797
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 871
BsiSI CCGG 2 cut(s) 365, 839
BslI CCNNNNNNNGG 5 cut(s) 125, 393, 431, 592, 744
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 5 cut(s) 115, 155, 164, 259, 797
BsoBI CYCGRG 1 cut(s) 871
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 4 cut(s) 331, 599, 672, 875
BspACI CCGC 3 cut(s) 593, 787, 859
BspANI GGCC 5 cut(s) 115, 155, 164, 259, 797
BspLI GGNNCC 2 cut(s) 24, 352
BspMAI CTGCAG 1 cut(s) 574
BspPI GGATC 1 cut(s) 870
BsrFI RCCGGY 1 cut(s) 838
BsrI ACTGG 2 cut(s) 14, 695
BssAI RCCGGY 1 cut(s) 838
BssECI CCNNGG 1 cut(s) 429
BssMI GATC 4 cut(s) 331, 599, 672, 875
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 3 cut(s) 120, 341, 700
Bst4CI ACNGT 3 cut(s) 63, 223, 812
Bst6I CTCTTC 2 cut(s) 501, 663
BstACI GRCGYC 1 cut(s) 288
BstAPI GCANNNNNTGC 2 cut(s) 236, 578
BstC8I GCNNGC 5 cut(s) 228, 261, 327, 591, 840
BstENI CCTNNNNNAGG 1 cut(s) 391
BstF5I GGATG 2 cut(s) 499, 699
BstKTI GATC 4 cut(s) 334, 602, 675, 878
BstMBI GATC 4 cut(s) 331, 599, 672, 875
BstMWI GCNNNNNNNGC 8 cut(s) 112, 131, 140, 161, 236, 578, 867, 893
BstNI CCWGG 3 cut(s) 120, 341, 700
BstSCI CCNGG 3 cut(s) 118, 339, 698
BstSFI CTRYAG 2 cut(s) 570, 865
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 5 cut(s) 367, 382, 432, 435, 556
BstX2I RGATCY 2 cut(s) 672, 875
BstYI RGATCY 2 cut(s) 672, 875
BsuI GTATCC 3 cut(s) 211, 523, 524
BsuRI GGCC 5 cut(s) 115, 155, 164, 259, 797
BtgZI GCGATG 1 cut(s) 645
BtsCI GGATG 2 cut(s) 499, 699
Cac8I GCNNGC 5 cut(s) 228, 261, 327, 591, 840
Cfr10I RCCGGY 1 cut(s) 838
Cfr13I GGNCC 1 cut(s) 113
CseI GACGC 1 cut(s) 296
Csp6I GTAC 4 cut(s) 412, 483, 790, 808
CviAII CATG 2 cut(s) 136, 767
CviQI GTAC 4 cut(s) 412, 483, 790, 808
DpnI GATC 4 cut(s) 333, 601, 674, 877
DpnII GATC 4 cut(s) 331, 599, 672, 875
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 501, 663
EarI CTCTTC 2 cut(s) 501, 663
EciI GGCGGA 1 cut(s) 848
Eco130I CCWWGG 1 cut(s) 429
Eco147I AGGCCT 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 871
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoRII CCWGG 3 cut(s) 118, 339, 698
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 2 cut(s) 139, 770
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 2 cut(s) 135, 766
FauI CCCGC 1 cut(s) 586
FauNDI CATATG 1 cut(s) 564
FbaI TGATCA 1 cut(s) 331
FblI GTMKAC 1 cut(s) 361
Fnu4HI GCNGC 5 cut(s) 371, 381, 446, 449, 570
FokI GGATG 2 cut(s) 506, 706
Fsp4HI GCNGC 5 cut(s) 371, 381, 446, 449, 570
FspBI CTAG 5 cut(s) 255, 357, 374, 678, 893
GluI GCNGC 5 cut(s) 371, 381, 446, 449, 570
GsaI CCCAGC 1 cut(s) 856
HaeIII GGCC 5 cut(s) 115, 155, 164, 259, 797
HapII CCGG 2 cut(s) 365, 839
HgaI GACGC 1 cut(s) 296
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 2 cut(s) 139, 770
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 2 cut(s) 610, 708
HpaII CCGG 2 cut(s) 365, 839
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 3 cut(s) 89, 226, 362
Hpy188I TCNGA 1 cut(s) 664
Hpy188III TCNNGA 2 cut(s) 742, 873
Hpy8I GTNNAC 3 cut(s) 89, 226, 362
HpyAV CCTTC 3 cut(s) 71, 473, 521
HpyCH4III ACNGT 3 cut(s) 63, 223, 812
HpyCH4IV ACGT 1 cut(s) 905
HpyCH4V TGCA 3 cut(s) 226, 383, 572
HpyF10VI GCNNNNNNNGC 8 cut(s) 112, 131, 140, 161, 236, 578, 867, 893
HpySE526I ACGT 1 cut(s) 905
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 2 cut(s) 139, 770
KroI GCCGGC 1 cut(s) 838
KroNI GCCGGC 1 cut(s) 840
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 4 cut(s) 331, 599, 672, 875
LmnI GCTCC 5 cut(s) 22, 122, 367, 763, 861
Lsp1109I GCAGC 5 cut(s) 367, 382, 432, 435, 556
LweI GCATC 2 cut(s) 367, 622
MaeI CTAG 5 cut(s) 255, 357, 374, 678, 893
MaeII ACGT 1 cut(s) 905
MaeIII GTNAC 2 cut(s) 52, 63
MalI GATC 4 cut(s) 333, 601, 674, 877
MboI GATC 4 cut(s) 331, 599, 672, 875
MboII GAAGA 6 cut(s) 186, 296, 466, 518, 680, 767
MfeI CAATTG 1 cut(s) 198
MflI RGATCY 2 cut(s) 672, 875
MhlI GDGCHC 1 cut(s) 228
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 7 cut(s) 198, 319, 477, 501, 614, 639, 758
MluNI TGGCCA 1 cut(s) 155
Mox20I TGGCCA 1 cut(s) 155
MroNI GCCGGC 1 cut(s) 838
MroXI GAANNNNTTC 1 cut(s) 458
MscI TGGCCA 1 cut(s) 155
MseI TTAA 2 cut(s) 204, 638
MslI CAYNNNNRTG 1 cut(s) 563
Msp20I TGGCCA 1 cut(s) 155
MspI CCGG 2 cut(s) 365, 839
MspR9I CCNGG 3 cut(s) 120, 341, 700
MunI CAATTG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 3 cut(s) 120, 341, 700
MwoI GCNNNNNNNGC 8 cut(s) 112, 131, 140, 161, 236, 578, 867, 893
NaeI GCCGGC 1 cut(s) 840
NdeI CATATG 1 cut(s) 564
NdeII GATC 4 cut(s) 331, 599, 672, 875
NgoMIV GCCGGC 1 cut(s) 838
NlaIII CATG 2 cut(s) 139, 770
NlaIV GGNNCC 2 cut(s) 24, 352
NmeAIII GCCGAG 1 cut(s) 823
NmuCI GTSAC 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 871
PceI AGGCCT 1 cut(s) 259
PctI GAATGC 1 cut(s) 100
PdiI GCCGGC 1 cut(s) 840
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 2 cut(s) 610, 708
PfoI TCCNGGA 1 cut(s) 698
PkrI GCNGC 5 cut(s) 372, 382, 447, 450, 571
Psp6I CCWGG 3 cut(s) 118, 339, 698
PspFI CCCAGC 1 cut(s) 852
PspGI CCWGG 3 cut(s) 118, 339, 698
PspN4I GGNNCC 2 cut(s) 24, 352
PspPI GGNCC 1 cut(s) 113
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 2 cut(s) 672, 875
RsaI GTAC 4 cut(s) 413, 484, 791, 809
RsaNI GTAC 4 cut(s) 412, 483, 790, 808
RseI CAYNNNNRTG 1 cut(s) 563
SaqAI TTAA 2 cut(s) 204, 638
SatI GCNGC 5 cut(s) 371, 381, 446, 449, 570
Sau3AI GATC 4 cut(s) 331, 599, 672, 875
Sau96I GGNCC 1 cut(s) 113
ScrFI CCNGG 3 cut(s) 120, 341, 700
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 2 cut(s) 367, 622
SfcI CTRYAG 2 cut(s) 570, 865
SfiI GGCCNNNNNGGCC 1 cut(s) 161
Sfr274I CTCGAG 1 cut(s) 871
SlaI CTCGAG 1 cut(s) 871
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 3 cut(s) 742, 871, 880
SmoI CTYRAG 3 cut(s) 742, 871, 880
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 7 cut(s) 198, 319, 477, 501, 614, 639, 758
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 3 cut(s) 593, 787, 859
SspMI CTAG 5 cut(s) 255, 357, 374, 678, 893
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 3 cut(s) 118, 339, 698
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 3 cut(s) 63, 223, 812
TaiI ACGT 1 cut(s) 908
TaqI TCGA 1 cut(s) 872
TaqII GACCGA 1 cut(s) 71
TasI AATT 7 cut(s) 198, 319, 477, 501, 614, 639, 758
TatI WGTACW 1 cut(s) 482
TfiI GAWTC 2 cut(s) 610, 708
Tru1I TTAA 2 cut(s) 204, 638
Tru9I TTAA 2 cut(s) 204, 638
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 5 cut(s) 370, 380, 445, 448, 569
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 5 cut(s) 56, 489, 551, 632, 783
TspGWI ACGGA 1 cut(s) 506
VneI GTGCAC 1 cut(s) 224
XagI CCTNNNNNAGG 1 cut(s) 391
XapI RAATTY 1 cut(s) 477
XhoI CTCGAG 1 cut(s) 871
XmiI GTMKAC 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 5 cut(s) 255, 357, 374, 678, 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.