Rh3AG314500

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0024916
Physical Location & Seq
Reverse (-)
42665994 .. 42668209
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG314500.1

Sequence Viewer

Length: 657 bp
ATGATTGCTAAAGCTTTGGCCATAGAGGCCAAAGCTGTGCTTTTTCAACTCTCCCCATCTTCAATTGTTAAATGGGGTGAGGATACCGTGCACGCATTGTTTGCTGTTGCTCAATGCTCTAGGCCTGCTGTGGTCTTTTTGGAGGATATTGACGCCCTACTGCCATATCTTCGTTGTTGGGATAATTGGCTTGCTGATCAAATCCTGGTTATCGGTTCCACTAGTAGACCGGAGCAGCTAGATGCTGCAACCTTGATAAGGTTCAGGGAGAGGTGGTACATTCCATTACCTACCAAGGGGAAAAGAGTGCTGCTGCTGAAGAAGTTCCTTCAAAACAATGAAATTTGTACTTTTACGGATGAGGAAATTGAAGAGGTATCCTCCTTTACCGAAGGATACAGCGTGGAGGATATTATCTCTGTCATTCATATGGCTGCAGTTCATGCCAACCAGCGTGCGGGGAGATCGGCTGTGATTCAATATATGGATTGTGGCGATGCTTTAATTCATTCAAAACCTCGTTTCTCGGAGGAAGAGATCTCTAGCATAAAACACTGGATGTCCAGCTGCAGTAAGAGGGGGGAAGAGATTCGCCTTTTCAGCTTCAGTGAGAAGGGGGAAGAGATTGGTCAAGAGTTAGGACATGAGTTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

218

Amino Acids

24.63

Weight (kDa)

5.21

Isoelectric Point (pI)

62.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 1 - 96 5.5e-08 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024916)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0494301
rosa_roxburghii Rroxscaffold_6G00391160
rosa_samantha Rh3AG314500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 226
AciI CCGC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 342
AcuI CTGAAG 2 cut(s) 338, 589
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 2 cut(s) 278, 349
AfiI CCNNNNNNNGG 3 cut(s) 258, 296, 457
AgsI TTSAA 6 cut(s) 47, 63, 332, 371, 479, 513
AhlI ACTAGT 1 cut(s) 221
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 6 cut(s) 14, 35, 238, 567, 603, 653
AluI AGCT 6 cut(s) 14, 35, 238, 567, 603, 653
Alw21I GWGCWC 1 cut(s) 93
Alw44I GTGCAC 1 cut(s) 89
AoxI GGCC 3 cut(s) 18, 27, 122
ApaLI GTGCAC 1 cut(s) 89
ApeKI GCWGC 6 cut(s) 235, 245, 310, 313, 434, 567
ApoI RAATTY 1 cut(s) 342
Asp700I GAANNNNTTC 2 cut(s) 323, 588
AsuHPI GGTGA 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 93
BalI TGGCCA 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 6 cut(s) 232, 247, 297, 300, 421, 554
BccI CCATC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 206
BciVI GTATCC 3 cut(s) 76, 388, 389
BclI TGATCA 1 cut(s) 196
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 4 cut(s) 120, 222, 239, 543
BfmI CTRYAG 2 cut(s) 435, 568
BfuI GTATCC 3 cut(s) 76, 388, 389
BglI GCCNNNNNGGC 1 cut(s) 26
BglII AGATCT 1 cut(s) 537
BisI GCNGC 6 cut(s) 236, 246, 311, 314, 435, 568
BlsI GCNGC 6 cut(s) 237, 247, 312, 315, 436, 569
Bme1390I CCNGG 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 232, 487
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 296, 457
Bse1I ACTGG 1 cut(s) 560
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 364, 564
BseLI CCNNNNNNNGG 3 cut(s) 258, 296, 457
BseNI ACTGG 1 cut(s) 560
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 6 cut(s) 232, 247, 297, 300, 421, 554
BshFI GGCC 3 cut(s) 20, 29, 124
BsiHKAI GWGCWC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 3 cut(s) 258, 296, 457
BsnI GGCC 3 cut(s) 20, 29, 124
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 3 cut(s) 196, 464, 537
BspACI CCGC 1 cut(s) 458
BspANI GGCC 3 cut(s) 20, 29, 124
BspLI GGNNCC 1 cut(s) 217
BspMAI CTGCAG 2 cut(s) 439, 572
BsrI ACTGG 1 cut(s) 560
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 3 cut(s) 196, 464, 537
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 4 cut(s) 366, 528, 579, 615
BstACI GRCGYC 1 cut(s) 153
BstAPI GCANNNNNTGC 2 cut(s) 101, 443
BstC8I GCNNGC 4 cut(s) 93, 126, 192, 456
BstDEI CTNAG 1 cut(s) 654
BstENI CCTNNNNNAGG 1 cut(s) 256
BstF5I GGATG 2 cut(s) 364, 564
BstKTI GATC 3 cut(s) 199, 467, 540
BstMBI GATC 3 cut(s) 196, 464, 537
BstMWI GCNNNNNNNGC 4 cut(s) 26, 101, 443, 600
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 2 cut(s) 435, 568
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 6 cut(s) 232, 247, 297, 300, 421, 554
BstX2I RGATCY 1 cut(s) 537
BstYI RGATCY 1 cut(s) 537
BsuI GTATCC 3 cut(s) 76, 388, 389
BsuRI GGCC 3 cut(s) 20, 29, 124
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 2 cut(s) 364, 564
BtsIMutI CAGTG 2 cut(s) 553, 613
Cac8I GCNNGC 4 cut(s) 93, 126, 192, 456
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 277, 348
CviAII CATG 2 cut(s) 443, 644
CviQI GTAC 2 cut(s) 277, 348
DdeI CTNAG 1 cut(s) 654
DpnI GATC 3 cut(s) 198, 466, 539
DpnII GATC 3 cut(s) 196, 464, 537
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 4 cut(s) 366, 528, 579, 615
EarI CTCTTC 4 cut(s) 366, 528, 579, 615
Eco130I CCWWGG 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 124
Eco57I CTGAAG 2 cut(s) 338, 589
EcoNI CCTNNNNNAGG 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 446, 647
FaiI YATR 9 cut(s) 23, 166, 429, 431, 444, 483, 485, 548, 645
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 2 cut(s) 442, 643
FauI CCCGC 1 cut(s) 451
FauNDI CATATG 1 cut(s) 429
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 6 cut(s) 236, 246, 311, 314, 435, 568
FokI GGATG 2 cut(s) 371, 571
Fsp4HI GCNGC 6 cut(s) 236, 246, 311, 314, 435, 568
FspBI CTAG 4 cut(s) 120, 222, 239, 543
GluI GCNGC 6 cut(s) 236, 246, 311, 314, 435, 568
HaeIII GGCC 3 cut(s) 20, 29, 124
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 2 cut(s) 446, 647
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 2 cut(s) 475, 589
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 91, 227
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 1 cut(s) 632
Hpy8I GTNNAC 2 cut(s) 91, 227
HpyAV CCTTC 3 cut(s) 338, 386, 607
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 4 cut(s) 91, 248, 437, 570
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 101, 443, 600
HpyF3I CTNAG 1 cut(s) 654
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 2 cut(s) 446, 647
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 3 cut(s) 196, 464, 537
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 8 cut(s) 138, 191, 218, 243, 250, 464, 541, 577
Lsp1109I GCAGC 6 cut(s) 232, 247, 297, 300, 421, 554
LweI GCATC 2 cut(s) 232, 487
MaeI CTAG 4 cut(s) 120, 222, 239, 543
MalI GATC 3 cut(s) 198, 466, 539
MboI GATC 3 cut(s) 196, 464, 537
MboII GAAGA 7 cut(s) 51, 161, 331, 383, 545, 596, 632
MfeI CAATTG 1 cut(s) 63
MflI RGATCY 1 cut(s) 537
MhlI GDGCHC 1 cut(s) 93
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 5 cut(s) 63, 184, 342, 366, 504
MluNI TGGCCA 1 cut(s) 20
Mox20I TGGCCA 1 cut(s) 20
MroXI GAANNNNTTC 2 cut(s) 323, 588
MscI TGGCCA 1 cut(s) 20
MseI TTAA 2 cut(s) 69, 503
MslI CAYNNNNRTG 1 cut(s) 428
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 206
MunI CAATTG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 26, 101, 443, 600
NdeI CATATG 1 cut(s) 429
NdeII GATC 3 cut(s) 196, 464, 537
NlaIII CATG 2 cut(s) 446, 647
NlaIV GGNNCC 1 cut(s) 217
PceI AGGCCT 1 cut(s) 124
PdmI GAANNNNTTC 2 cut(s) 323, 588
PfeI GAWTC 2 cut(s) 475, 589
PkrI GCNGC 6 cut(s) 237, 247, 312, 315, 436, 569
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 217
PstI CTGCAG 2 cut(s) 439, 572
PsuI RGATCY 1 cut(s) 537
PvuII CAGCTG 1 cut(s) 567
RsaI GTAC 2 cut(s) 278, 349
RsaNI GTAC 2 cut(s) 277, 348
RseI CAYNNNNRTG 1 cut(s) 428
SaqAI TTAA 2 cut(s) 69, 503
SatI GCNGC 6 cut(s) 236, 246, 311, 314, 435, 568
Sau3AI GATC 3 cut(s) 196, 464, 537
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 93
SfaNI GCATC 2 cut(s) 232, 487
SfcI CTRYAG 2 cut(s) 435, 568
SfiI GGCCNNNNNGGCC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 428
SpeI ACTAGT 1 cut(s) 221
Sse9I AATT 5 cut(s) 63, 184, 342, 366, 504
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 1 cut(s) 458
SspMI CTAG 4 cut(s) 120, 222, 239, 543
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 88
TasI AATT 5 cut(s) 63, 184, 342, 366, 504
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 2 cut(s) 475, 589
Tru1I TTAA 2 cut(s) 69, 503
Tru9I TTAA 2 cut(s) 69, 503
TscAI CASTG 2 cut(s) 560, 613
TseI GCWGC 6 cut(s) 235, 245, 310, 313, 434, 567
TspDTI ATGAA 4 cut(s) 354, 416, 431, 497
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 2 cut(s) 560, 613
VneI GTGCAC 1 cut(s) 89
XagI CCTNNNNNAGG 1 cut(s) 256
XapI RAATTY 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 226
XmnI GAANNNNTTC 2 cut(s) 323, 588
XspI CTAG 4 cut(s) 120, 222, 239, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.