Rroxscaffold_6G00416570

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0032187
Physical Location & Seq
Reverse (-)
38576009 .. 38581439
5431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416570.1

Sequence Viewer

Length: 717 bp
ATGGATATTTCTCGGAATAACTTATCCGGACAGATTTCAGAATTTTTAGGCAAGCTTGGAGCTCTCGGGTATTTCAATCTTTCTCAAAATGATTTTGAAGGTGAATTGCCTAAAGAAGAAATCTTTCTAAACGTAAGTGGAGTCTCGGTTCTTGGAATTACTTCTACCTCCATGTTCCGGCAGAAAGCCTCATTCATCTCGAGGACTACTAGCCCCAAAAGTATGCTTCCCTCAAACCTATTCCCCTCCATGAAGGGAGCCTTGTCACCGAAGTCAAGTTACCTAGGGAGGATGGGATTGGCCCTAAAAATATGTTCGGATTCGGATACGGTCCCTCTAACTTGTAAAGCTTCCCGATCACATCGGGGAGACTACCACCAATGTGGTTTTGTTCCATTCCAAGATTTATCAAGTTTACCGATTTCCAATGCCGGTAGGGAGGGGTCCATAAGATTAGTACAATTAGCAAGGAAACCGAGAAAAGTAAGGTCACCGACTTTCCCACTTCCCGGTGAATTGTTATCAAAGCTTCGGTCTGGACCATTGGGGCATTTTGCTCGTCCACCACCGGAGGCAGAACCGCAGGTGGACGAGCAAAATGAAGAGCCTCCAGTGGTGGACGCGCCTCTTTTTGACCGGAGGGGCCTGTTGTTGACCCGGAGGAGGCTATTTAAGACCCGGACGAGCCTGAGCCAGTTGATGGCAGCAACGCGATAA

Protein Analysis

238

Amino Acids

26.19

Weight (kDa)

9.96

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032187)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_6G00416570
rosa_samantha Rh3AG122000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 574
Acc36I ACCTGC 1 cut(s) 574
AccB7I CCANNNNNTGG 1 cut(s) 700
AccII CGCG 2 cut(s) 623, 712
AccIII TCCGGA 1 cut(s) 26
AciI CCGC 1 cut(s) 581
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 1 cut(s) 459
AfiI CCNNNNNNNGG 4 cut(s) 177, 509, 663, 700
AgsI TTSAA 2 cut(s) 76, 98
AleI CACNNNNGTG 1 cut(s) 381
AloI GAACNNNNNNTCC 2 cut(s) 132, 164
AluBI AGCT 4 cut(s) 55, 62, 350, 529
AluI AGCT 4 cut(s) 55, 62, 350, 529
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 2 cut(s) 148, 363
Ama87I CYCGRG 2 cut(s) 65, 199
Aor13HI TCCGGA 1 cut(s) 26
AoxI GGCC 2 cut(s) 300, 643
ApeKI GCWGC 1 cut(s) 704
ApoI RAATTY 1 cut(s) 41
ArsI GACNNNNNNTTYG 2 cut(s) 518, 550
Asp700I GAANNNNTTC 2 cut(s) 123, 160
AspA2I CCTAGG 1 cut(s) 283
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 5 cut(s) 301, 331, 444, 539, 643
AsuC2I CCSGG 3 cut(s) 510, 658, 679
AsuHPI GGTGA 4 cut(s) 113, 258, 483, 524
AvaI CYCGRG 2 cut(s) 65, 199
AvaII GGWCC 3 cut(s) 331, 444, 539
AvrII CCTAGG 1 cut(s) 283
BanII GRGCYC 1 cut(s) 64
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
Bbv12I GWGCWC 1 cut(s) 64
BccI CCATC 2 cut(s) 286, 694
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciVI GTATCC 1 cut(s) 319
BcnI CCSGG 3 cut(s) 510, 658, 679
BcoDI GTCTC 2 cut(s) 148, 363
BfaI CTAG 2 cut(s) 210, 284
BfuAI ACCTGC 1 cut(s) 574
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 1 cut(s) 705
BlnI CCTAGG 1 cut(s) 283
BlsI GCNGC 1 cut(s) 706
Bme1390I CCNGG 3 cut(s) 510, 658, 679
Bme18I GGWCC 3 cut(s) 331, 444, 539
BmeT110I CYCGRG 2 cut(s) 65, 199
BmgT120I GGNCC 5 cut(s) 301, 331, 444, 539, 643
BmiI GGNNCC 4 cut(s) 259, 333, 445, 644
BmrFI CCNGG 3 cut(s) 510, 658, 679
BpmI CTGGAG 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 689
BpuMI CCSGG 3 cut(s) 510, 658, 679
BsaJI CCNNGG 1 cut(s) 283
BsaWI WCCGGW 3 cut(s) 26, 568, 636
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 509, 663, 700
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 2 cut(s) 611, 694
BseAI TCCGGA 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 4 cut(s) 177, 509, 663, 700
BseMII CTCAG 1 cut(s) 680
BseNI ACTGG 2 cut(s) 611, 694
BseRI GAGGAG 1 cut(s) 676
Bsh1236I CGCG 2 cut(s) 623, 712
BshFI GGCC 2 cut(s) 302, 645
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 2 cut(s) 65, 199
BsiSI CCGG 8 cut(s) 27, 178, 432, 510, 569, 637, 658, 679
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 4 cut(s) 177, 509, 663, 700
BsmAI GTCTC 2 cut(s) 148, 363
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 2 cut(s) 302, 645
BsoBI CYCGRG 2 cut(s) 65, 199
Bsp1286I GDGCHC 1 cut(s) 64
Bsp13I TCCGGA 1 cut(s) 26
Bsp143I GATC 1 cut(s) 356
BspACI CCGC 1 cut(s) 581
BspANI GGCC 2 cut(s) 302, 645
BspCNI CTCAG 1 cut(s) 681
BspEI TCCGGA 1 cut(s) 26
BspFNI CGCG 2 cut(s) 623, 712
BspLI GGNNCC 4 cut(s) 259, 333, 445, 644
BspMI ACCTGC 1 cut(s) 574
BspQI GCTCTTC 1 cut(s) 597
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 2 cut(s) 611, 694
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 597
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 689
BstEII GGTNACC 1 cut(s) 489
BstF5I GGATG 1 cut(s) 297
BstFNI CGCG 2 cut(s) 623, 712
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 1 cut(s) 359
BstMAI GTCTC 2 cut(s) 148, 363
BstMBI GATC 1 cut(s) 356
BstPI GGTNACC 1 cut(s) 489
BstSCI CCNGG 3 cut(s) 508, 656, 677
BstUI CGCG 2 cut(s) 623, 712
BstXI CCANNNNNNTGG 1 cut(s) 383
BsuI GTATCC 1 cut(s) 319
BsuRI GGCC 2 cut(s) 302, 645
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 618
BveI ACCTGC 1 cut(s) 574
Cac8I GCNNGC 1 cut(s) 53
CfoI GCGC 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 5 cut(s) 301, 331, 444, 539, 643
CseI GACGC 1 cut(s) 629
Csp6I GTAC 1 cut(s) 458
CviAII CATG 2 cut(s) 172, 250
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 1 cut(s) 689
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 597
EarI CTCTTC 1 cut(s) 597
Ecl136II GAGCTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 64
Eco47I GGWCC 3 cut(s) 331, 444, 539
Eco53kI GAGCTC 1 cut(s) 62
Eco88I CYCGRG 2 cut(s) 65, 199
Eco91I GGTNACC 1 cut(s) 489
EcoICRI GAGCTC 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 643
EcoO65I GGTNACC 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 175, 253
FaiI YATR 5 cut(s) 173, 224, 251, 313, 449
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 317
FatI CATG 2 cut(s) 171, 249
Fnu4HI GCNGC 1 cut(s) 705
FokI GGATG 1 cut(s) 304
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 705
FspBI CTAG 2 cut(s) 210, 284
GlaI GCGC 1 cut(s) 624
GluI GCNGC 1 cut(s) 705
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 2 cut(s) 302, 645
HapII CCGG 8 cut(s) 27, 178, 432, 510, 569, 637, 658, 679
HgaI GACGC 1 cut(s) 629
HhaI GCGC 1 cut(s) 625
Hin1II CATG 2 cut(s) 175, 253
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HindIII AAGCTT 3 cut(s) 53, 348, 527
HinfI GANTC 2 cut(s) 141, 320
HpaII CCGG 8 cut(s) 27, 178, 432, 510, 569, 637, 658, 679
HphI GGTGA 4 cut(s) 113, 258, 483, 524
Hpy166II GTNNAC 5 cut(s) 416, 563, 589, 619, 654
Hpy188I TCNGA 4 cut(s) 15, 40, 319, 325
Hpy188III TCNNGA 4 cut(s) 27, 199, 354, 537
Hpy8I GTNNAC 5 cut(s) 416, 563, 589, 619, 654
HpyAV CCTTC 2 cut(s) 92, 247
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 689
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 2 cut(s) 175, 253
HspAI GCGC 1 cut(s) 623
Kpn2I TCCGGA 1 cut(s) 26
Kzo9I GATC 1 cut(s) 356
LguI GCTCTTC 1 cut(s) 597
LmnI GCTCC 2 cut(s) 59, 257
MaeI CTAG 2 cut(s) 210, 284
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 3 cut(s) 264, 278, 489
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MboII GAAGA 2 cut(s) 128, 614
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 5 cut(s) 41, 104, 156, 461, 515
MlyI GAGTC 1 cut(s) 150
MroI TCCGGA 1 cut(s) 26
MroXI GAANNNNTTC 2 cut(s) 123, 160
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 1 cut(s) 381
MspI CCGG 8 cut(s) 27, 178, 432, 510, 569, 637, 658, 679
MspR9I CCNGG 3 cut(s) 510, 658, 679
MvnI CGCG 2 cut(s) 623, 712
NciI CCSGG 3 cut(s) 510, 658, 679
NdeII GATC 1 cut(s) 356
NlaIII CATG 2 cut(s) 175, 253
NlaIV GGNNCC 4 cut(s) 259, 333, 445, 644
NmuCI GTSAC 2 cut(s) 264, 489
OliI CACNNNNGTG 1 cut(s) 381
PaeR7I CTCGAG 1 cut(s) 199
PaqCI CACCTGC 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 597
PdmI GAANNNNTTC 2 cut(s) 123, 160
PfeI GAWTC 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 700
PkrI GCNGC 1 cut(s) 706
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 64
PspEI GGTNACC 1 cut(s) 489
PspN4I GGNNCC 4 cut(s) 259, 333, 445, 644
PspPI GGNCC 5 cut(s) 301, 331, 444, 539, 643
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
RseI CAYNNNNRTG 1 cut(s) 381
SacI GAGCTC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 597
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 1 cut(s) 705
Sau3AI GATC 1 cut(s) 356
Sau96I GGNCC 5 cut(s) 301, 331, 444, 539, 643
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 3 cut(s) 510, 658, 679
SduI GDGCHC 1 cut(s) 64
Sfr274I CTCGAG 1 cut(s) 199
SinI GGWCC 3 cut(s) 331, 444, 539
SlaI CTCGAG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 5 cut(s) 41, 104, 156, 461, 515
SsiI CCGC 1 cut(s) 581
SspMI CTAG 2 cut(s) 210, 284
SstI GAGCTC 1 cut(s) 64
StyD4I CCNGG 3 cut(s) 508, 656, 677
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 135
TaqI TCGA 1 cut(s) 200
TaqII GACCGA 1 cut(s) 522
TasI AATT 5 cut(s) 41, 104, 156, 461, 515
TatI WGTACW 1 cut(s) 457
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TscAI CASTG 1 cut(s) 618
TseFI GTSAC 2 cut(s) 264, 489
TseI GCWGC 1 cut(s) 704
Tsp45I GTSAC 2 cut(s) 264, 489
TspDTI ATGAA 3 cut(s) 184, 266, 615
TspRI CASTG 1 cut(s) 618
Van91I CCANNNNNTGG 1 cut(s) 700
VpaK11BI GGWCC 3 cut(s) 331, 444, 539
XapI RAATTY 1 cut(s) 41
XhoI CTCGAG 1 cut(s) 199
XmaJI CCTAGG 1 cut(s) 283
XmnI GAANNNNTTC 2 cut(s) 123, 160
XspI CTAG 2 cut(s) 210, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.