Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0032188

Physical Location & Seq

Genomic Coordinates Reverse (-)

38835856 .. 38840121

Gene Structure 4266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTTGACCGATTGTGGAAGGAGCACTTACAAGTGCTCAAGTAACATGGATAAACTAAAGATGATTGGTTATGATACGAGATTGGAGAAGCTTCTCTGGATTCTAAACCACTATCATTCTGAACTGGAAGTGATATTCTACATTGACTTGCAGATATATGGGTACAGAATGGCACTGTGGGCAAAGCATTTAGGACTTGTTGAAAAATGTTTCAATCAGCCAGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006950 GO:0008081 GO:0008150 GO:0008152 GO:0008219 GO:0009266 GO:0009409 GO:0009506 GO:0009628 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010119 GO:0010646 GO:0010647 GO:0012501 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0023051 GO:0023056 GO:0030054 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046473 GO:0046486 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0090333 GO:1901419 GO:1901421 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

76

Amino Acids

9.07

Weight (kDa)

6.81

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032188)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_6G00417020 Rroxscaffold_7G00205680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	164
AgsI	TTSAA	2 cut(s)	203, 214
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw21I	GWGCWC	2 cut(s)	26, 38
Bbv12I	GWGCWC	2 cut(s)	26, 38
BpuEI	CTTGAG	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	129
BsiHKAI	GWGCWC	2 cut(s)	26, 38
Bsp1286I	GDGCHC	2 cut(s)	26, 38
BsrI	ACTGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	2 cut(s)	91, 220
CviKI_1	RGCY	2 cut(s)	91, 220
CviQI	GTAC	1 cut(s)	163
FaeI	CATG	1 cut(s)	49
FaiI	YATR	4 cut(s)	47, 72, 157, 159
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FatI	CATG	1 cut(s)	45
Hin1II	CATG	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	2 cut(s)	100, 224
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	97, 228
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	12
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	2 cut(s)	82, 110
MaeIII	GTNAC	1 cut(s)	41
MhlI	GDGCHC	2 cut(s)	26, 38
MwoI	GCNNNNNNNGC	1 cut(s)	179
NlaIII	CATG	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	100
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	26, 38
SetI	ASST	1 cut(s)	93
SgeI	CNNG	8 cut(s)	43, 51, 58, 90, 109, 137, 160, 209
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	177
TaqII	GACCGA	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	100
TscAI	CASTG	1 cut(s)	180
TspRI	CASTG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.