Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0032188

Physical Location & Seq

Genomic Coordinates Reverse (-)

55309659 .. 55311065

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCATGATCCGAAGAAAGGTGGAGACAATTATAGGGAGGGCTCGACTCTCCCTCTCACTGACAAAAATGGGAAACCCTCCATTCTCACCGATCCTTCGCTCTCCTTCTTCCGGGATTACCTCAAAAGGAGCACTTACAAGCGCTCAAGTAACATGGATAGACTAAAGATGATTGCTTATGATACTAGATGTCTTGGATTCATGATGGCAAAAATGGTGTTCCAGGAACTCATGGACCCCTCAAAATTCCCAAAGTTCAAGTCATTTCTCACGAAGGTATCAGAAGCCAAATGTTCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin Pkinase

Protein Analysis

100

Amino Acids

11.55

Weight (kDa)

9.66

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032188)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_6G00417020 Rroxscaffold_7G00205680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	2, 86
AcsI	RAATTY	1 cut(s)	245
AfeI	AGCGCT	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	17, 111
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	222
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	2, 86
Aor51HI	AGCGCT	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	245
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	235
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	235
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	134
BccI	CCATC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	113, 224
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	2 cut(s)	113, 224
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 111
BseBI	CCWGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	17, 111
BsiHKAI	GWGCWC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	17, 111
BsmAI	GTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	2 cut(s)	44, 134
Bsp143I	GATC	2 cut(s)	7, 91
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	2, 86
BssMI	GATC	2 cut(s)	7, 91
Bst2UI	CCWGG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	145
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	10, 94
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	2 cut(s)	7, 91
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	111, 222
BtsIMutI	CAGTG	1 cut(s)	57
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	235
CviAII	CATG	4 cut(s)	5, 154, 202, 232
CviJI	RGCY	2 cut(s)	42, 287
CviKI_1	RGCY	2 cut(s)	42, 287
DpnI	GATC	2 cut(s)	9, 93
DpnII	GATC	2 cut(s)	7, 91
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	235
Eco47III	AGCGCT	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	44
FaeI	CATG	4 cut(s)	8, 157, 205, 235
FaiI	YATR	6 cut(s)	6, 33, 155, 180, 203, 233
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FatI	CATG	4 cut(s)	4, 153, 201, 231
FriOI	GRGCYC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	145
HapII	CCGG	1 cut(s)	112
HhaI	GCGC	1 cut(s)	144
Hin1II	CATG	4 cut(s)	8, 157, 205, 235
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	2 cut(s)	46, 198
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	12, 283
Hpy188III	TCNNGA	2 cut(s)	202, 271
HpyAV	CCTTC	3 cut(s)	105, 115, 268
HpyCH4V	TGCA	1 cut(s)	4
Hsp92II	CATG	4 cut(s)	8, 157, 205, 235
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	2 cut(s)	7, 91
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	3 cut(s)	125, 209, 236
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	2 cut(s)	9, 93
MboI	GATC	2 cut(s)	7, 91
MboII	GAAGA	2 cut(s)	25, 100
MhlI	GDGCHC	2 cut(s)	44, 134
MluCI	AATT	2 cut(s)	28, 245
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	5 cut(s)	31, 63, 88, 131, 250
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	113, 224
MvaI	CCWGG	1 cut(s)	224
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	7, 91
NlaIII	CATG	4 cut(s)	8, 157, 205, 235
NlaIV	GGNNCC	1 cut(s)	237
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	198
PfoI	TCCNGGA	2 cut(s)	111, 222
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	235
Sau3AI	GATC	2 cut(s)	7, 91
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	113, 224
SduI	GDGCHC	2 cut(s)	44, 134
SetI	ASST	3 cut(s)	22, 123, 279
SinI	GGWCC	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	2 cut(s)	28, 245
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	111, 222
TaqI	TCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	28, 245
TfiI	GAWTC	1 cut(s)	198
TscAI	CASTG	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	245
XspI	CTAG	1 cut(s)	186
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.