Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0021224

Physical Location & Seq

Genomic Coordinates Forward (+)

44597803 .. 44598670

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00423440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGCAAATAGTTATTACTGTTGGAGATGAGCAACCTGCCATGGACAAAAAGCAGTTTGTGGGGTTCATAAAGAGTTTTGTTGGGGAGAGCATGCATGATGATGAGAGCATAGTGTTTGCATACTACAAGGAAGGTGCTACTGAGCCGACCTTCATCTATCTTGCCCATGGCTTGAAGGAAGTCAAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0030154 GO:0032502 GO:0042127 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0048869 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCTP

Protein Analysis

63

Amino Acids

7.12

Weight (kDa)

4.89

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCTP	PF00838	24 - 59	1.3e-07	Translationally controlled tumour protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021224)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G320200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0455811
rosa_roxburghii	Rroxscaffold_6G00423440
rosa_wichuraiana	Rw3G005660 Rw3G006010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	175
BfuAI	ACCTGC	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	39, 166
BseDI	CCNNGG	2 cut(s)	39, 166
BseMII	CTCAG	1 cut(s)	132
Bsp19I	CCATGG	2 cut(s)	39, 166
BspCNI	CTCAG	1 cut(s)	133
BspMI	ACCTGC	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	39, 166
BssT1I	CCWWGG	2 cut(s)	39, 166
Bst4CI	ACNGT	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	2 cut(s)	39, 166
BstNSI	RCATGY	1 cut(s)	94
BtgI	CCRYGG	2 cut(s)	39, 166
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	92
CviAII	CATG	4 cut(s)	40, 91, 95, 167
CviJI	RGCY	2 cut(s)	145, 171
CviKI_1	RGCY	2 cut(s)	145, 171
DdeI	CTNAG	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	39, 166
EcoT14I	CCWWGG	2 cut(s)	39, 166
EcoT22I	ATGCAT	1 cut(s)	96
ErhI	CCWWGG	2 cut(s)	39, 166
FaeI	CATG	4 cut(s)	43, 94, 98, 170
FaiI	YATR	7 cut(s)	41, 68, 92, 96, 110, 121, 168
FatI	CATG	4 cut(s)	39, 90, 94, 166
Hin1II	CATG	4 cut(s)	43, 94, 98, 170
HpyAV	CCTTC	3 cut(s)	125, 160, 169
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	4, 94, 119
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	43, 94, 98, 170
LpnPI	CCDG	1 cut(s)	48
Mph1103I	ATGCAT	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	99
NcoI	CCATGG	2 cut(s)	39, 166
NlaIII	CATG	4 cut(s)	43, 94, 98, 170
NsiI	ATGCAT	1 cut(s)	96
NspI	RCATGY	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	99
SetI	ASST	3 cut(s)	37, 136, 152
SgeI	CNNG	8 cut(s)	47, 52, 103, 107, 139, 173, 179, 184
SmiMI	CAYNNNNRTG	1 cut(s)	99
SphI	GCATGC	1 cut(s)	94
StyI	CCWWGG	2 cut(s)	39, 166
TaaI	ACNGT	1 cut(s)	19
TspDTI	ATGAA	2 cut(s)	55, 142
XceI	RCATGY	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.