Rw3G005660

Belongs to the TCTP family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
4711474 .. 4713141
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G005660.1

Sequence Viewer

Length: 381 bp
ATGCTTGTCTATCAAGATCTTCTTACAGCTGATGAGCTTCTTTCAGACTCATACCCGTACAAGGAAATTGAGAATGGGATACTTTGGGAGGTGGAAGGAAAGTGGGTGGTTCAAGGAGCAATTGAAGTAGATATTACCCATCGGCCGAAGGCGGGGGTGATGAAGATGAAGATAAAATTGTTGACACACAAATTGGATGGTGAGCAGCAAGAGCTTTTCAAGAAGCATATTGAAGGAGCTACCAAGTACCTGTTCTGGAAGCTTGGAGGTTTTGTTGGGGAGAGCATGCATGATGATGAGAGCTTCGCATACTACAAGGAAGGTGCTACTGAGCCGACCTTCATCTATCTTGCCCATGGCTTGAAGGAAGTCAAGTGTTGA

Protein Analysis

126

Amino Acids

14.5

Weight (kDa)

5.34

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCTP PF00838 1 - 52 2.6e-13 Translationally controlled tumour protein
TCTP PF00838 57 - 122 9.8e-06 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021224)

Species Orthologous Gene IDs
prunus_persica Prupe.6G320200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0455811
rosa_roxburghii Rroxscaffold_6G00423440
rosa_wichuraiana Rw3G005660 Rw3G006010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 143
AfaI GTAC 2 cut(s) 59, 248
AfiI CCNNNNNNNGG 2 cut(s) 61, 152
AgsI TTSAA 5 cut(s) 113, 125, 220, 233, 364
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 6 cut(s) 29, 37, 214, 239, 262, 303
AluI AGCT 6 cut(s) 29, 37, 214, 239, 262, 303
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 169, 212
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 147, 191
BciVI GTATCC 1 cut(s) 72
BfuI GTATCC 1 cut(s) 72
BglII AGATCT 1 cut(s) 16
BisI GCNGC 1 cut(s) 206
BlsI GCNGC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 152
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 61, 152
BseMII CTCAG 1 cut(s) 321
BseX3I CGGCCG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 61, 152
BsnI GGCC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 16
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 1 cut(s) 152
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 330
BstDSI CCRYGG 1 cut(s) 355
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BstZI CGGCCG 1 cut(s) 143
BsuI GTATCC 1 cut(s) 72
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 58, 247
CviAII CATG 3 cut(s) 286, 290, 356
CviJI RGCY 9 cut(s) 29, 37, 145, 214, 239, 262, 303, 334, 360
CviKI_1 RGCY 9 cut(s) 29, 37, 145, 214, 239, 262, 303, 334, 360
CviQI GTAC 2 cut(s) 58, 247
DdeI CTNAG 1 cut(s) 330
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 143
EagI CGGCCG 1 cut(s) 143
EclXI CGGCCG 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 355
Eco52I CGGCCG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 355
EcoT22I ATGCAT 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 3 cut(s) 289, 293, 359
FaiI YATR 6 cut(s) 52, 228, 287, 291, 310, 357
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 3 cut(s) 285, 289, 355
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 206
GluI GCNGC 1 cut(s) 206
HaeIII GGCC 1 cut(s) 145
Hin1II CATG 3 cut(s) 289, 293, 359
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 1 cut(s) 47
HphI GGTGA 2 cut(s) 169, 212
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 3 cut(s) 14, 220, 256
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 6 cut(s) 89, 142, 227, 314, 349, 358
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 330
Hsp92II CATG 3 cut(s) 289, 293, 359
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 2 cut(s) 116, 236
LpnPI CCDG 2 cut(s) 241, 263
Lsp1109I GCAGC 1 cut(s) 217
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 3 cut(s) 11, 175, 181
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 16
MluCI AATT 4 cut(s) 66, 120, 176, 191
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 2 cut(s) 82, 260
Mph1103I ATGCAT 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 29
MunI CAATTG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 211
NcoI CCATGG 1 cut(s) 355
NdeII GATC 1 cut(s) 16
NlaIII CATG 3 cut(s) 289, 293, 359
NsiI ATGCAT 1 cut(s) 291
NspI RCATGY 1 cut(s) 289
PaeI GCATGC 1 cut(s) 289
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 2 cut(s) 59, 248
RsaNI GTAC 2 cut(s) 58, 247
RseI CAYNNNNRTG 1 cut(s) 294
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 1 cut(s) 16
SchI GAGTC 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 294
SphI GCATGC 1 cut(s) 289
Sse9I AATT 4 cut(s) 66, 120, 176, 191
SsiI CCGC 1 cut(s) 152
StyI CCWWGG 1 cut(s) 355
TasI AATT 4 cut(s) 66, 120, 176, 191
TseI GCWGC 1 cut(s) 205
TspDTI ATGAA 3 cut(s) 176, 182, 331
XceI RCATGY 1 cut(s) 289
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.