Rroxscaffold_6G00425660

Omega-hydroxypalmitate O-feruloyl

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
46681163 .. 46688158
6996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425660.1

Sequence Viewer

Length: 954 bp
ATGAGATATTCGACGACCTCTTTAGAAACATCCACTGAGAAACTCAAGCAGAGCCTGGCCAACATATTGGTGCCCTATGATTTCTTGGCCGGAAGACTGAAATCGAATCCCAACAGTGGTACAGGCGGCGGTCGCGTAGAGATTGAGTGCAATGCAGCAGGGGCAGGCTTTGTGGTGGCCTCTAGTGAGTATGAATTACATGAGATTGGAGACTTGGTGTATCCTAATTCAGCTTTTGCACAACTAATTTGCATCAGCATGGATATGGATCATCCTCGCCATGAAAATGATGCATCCATCGAACATCCTGCAGCTTCTGCTGCTCATCGCGATCACCCACTATGCATTCTGCAGGTCGTGCAATCTAATTCGTTGAGTGTGGTGGATTTGCAATGGGCATCTCAATCAACCAATCATGTTACATTTGATGGTCTAAGCTTCAGACTCTTCTTGAACAATCTGGCTGCCGTGGCCGGTGACAAGCCCCTGGCTATAATCCCTTACAAGGACCGCAAAATATTAGCCGCTGGATCCCCTCCAAGTGTTGCATTTCCCCACCCTGAATTGCAGGAACTCAAGATGTGCTCCCAGGTTGGCCAAGATGATGATCACTTAAGCGCCAGTGCGTTATCAGCATGTGATCATCAATGTGGTGATGATGATGGGATGGATAGAGAGTCAAGGATTCTATATGCTGTGGACATAAGGCCAAGGCTGACGCCACCACTGCCCACATCGTACGCTGGGAATGCAGTTTTGACTGCCTACTCTGCTGCGCGGTGTAGGGAACTGGAACAAGGCCCCTTCTCAAGAACAGTGGAGATGGTGTACGAGGGAGCAGCGAGGATGACGGACGAGTATGCGAGGTCCGTCATCGACTGGGGAGAGTTACACAAAGGGTTTCCTCCAGTGGCGGAGCCACGTTGGGGCCTACTGGGTCCCGTGATCCAGTAA

Protein Analysis

317

Amino Acids

34.49

Weight (kDa)

5.09

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 9 - 202 4.4e-27 Transferase family
Transferase PF02458 225 - 297 2.3e-16 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019624)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G65450 AT1G65450 AT1G65450
fragaria_vesca FvH4_6g00100
prunus_persica Prupe.6G364800_v2.0.a1
rosa_laevigata RLG00000025997
rosa_roxburghii Rroxscaffold_6G00425660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 70
AccII CGCG 3 cut(s) 135, 330, 778
AciI CCGC 6 cut(s) 126, 129, 511, 525, 778, 914
AclWI GGATC 4 cut(s) 276, 525, 538, 940
AcoI YGGCCR 4 cut(s) 57, 87, 471, 595
AcuI CTGAAG 1 cut(s) 424
AcyI GRCGYC 1 cut(s) 719
AfaI GTAC 3 cut(s) 121, 740, 830
AfiI CCNNNNNNNGG 3 cut(s) 116, 505, 926
AflII CTTAAG 1 cut(s) 613
AgsI TTSAA 1 cut(s) 454
AjnI CCWGG 3 cut(s) 54, 486, 588
AluBI AGCT 3 cut(s) 233, 314, 438
AluI AGCT 3 cut(s) 233, 314, 438
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 4 cut(s) 276, 525, 538, 940
AlwNI CAGNNNCTG 2 cut(s) 55, 317
AoxI GGCC 8 cut(s) 57, 87, 177, 471, 595, 707, 799, 928
ApeKI GCWGC 6 cut(s) 155, 311, 320, 464, 773, 839
AspLEI GCGC 2 cut(s) 620, 778
AspS9I GGNCC 5 cut(s) 508, 800, 867, 928, 938
AsuHPI GGTGA 3 cut(s) 326, 488, 665
AvaII GGWCC 3 cut(s) 508, 867, 938
BaeGI GKGCMC 1 cut(s) 75
BalI TGGCCA 2 cut(s) 59, 597
BamHI GGATCC 1 cut(s) 530
BanI GGYRCC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 6 cut(s) 167, 307, 323, 451, 760, 851
BccI CCATC 5 cut(s) 305, 422, 656, 661, 817
BceAI ACGGC 1 cut(s) 452
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 3 cut(s) 56, 488, 590
BciVI GTATCC 1 cut(s) 231
BclI TGATCA 2 cut(s) 607, 640
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 2 cut(s) 309, 350
BfoI RGCGCY 1 cut(s) 621
BfrI CTTAAG 1 cut(s) 613
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 1 cut(s) 231
BisI GCNGC 8 cut(s) 127, 156, 312, 321, 465, 525, 774, 840
BlsI GCNGC 8 cut(s) 128, 157, 313, 322, 466, 526, 775, 841
Bme1390I CCNGG 3 cut(s) 56, 488, 590
Bme18I GGWCC 3 cut(s) 508, 867, 938
BmgT120I GGNCC 5 cut(s) 508, 800, 867, 928, 938
BmiI GGNNCC 7 cut(s) 72, 532, 802, 918, 929, 939, 940
BmrFI CCNGG 3 cut(s) 56, 488, 590
BmrI ACTGGG 2 cut(s) 889, 944
BmsI GCATC 4 cut(s) 261, 280, 302, 407
BmuI ACTGGG 2 cut(s) 889, 944
BpiI GAAGAC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 891
BpuEI CTTGAG 3 cut(s) 29, 560, 793
BsaBI GATNNNNATC 2 cut(s) 267, 606
BsaHI GRCGYC 1 cut(s) 719
BsaJI CCNNGG 4 cut(s) 468, 486, 588, 710
BsaXI ACNNNNNCTCC 4 cut(s) 201, 231, 812, 842
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 505, 926
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 6 cut(s) 621, 795, 884, 908, 939, 949
Bse3DI GCAATG 2 cut(s) 157, 398
Bse8I GATNNNNATC 2 cut(s) 267, 606
BseBI CCWGG 3 cut(s) 56, 488, 590
BseDI CCNNGG 4 cut(s) 468, 486, 588, 710
BseGI GGATG 6 cut(s) 29, 271, 293, 304, 672, 852
BseJI GATNNNNATC 2 cut(s) 267, 606
BseLI CCNNNNNNNGG 3 cut(s) 116, 505, 926
BseMI GCAATG 2 cut(s) 157, 398
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 6 cut(s) 621, 795, 884, 908, 939, 949
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 6 cut(s) 167, 307, 323, 451, 760, 851
BseYI CCCAGC 1 cut(s) 743
Bsh1236I CGCG 3 cut(s) 135, 330, 778
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 8 cut(s) 59, 89, 179, 473, 597, 709, 801, 930
BshNI GGYRCC 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 2 cut(s) 90, 474
BsiWI CGTACG 1 cut(s) 738
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 3 cut(s) 116, 505, 926
BsmAI GTCTC 1 cut(s) 204
BsmFI GGGAC 1 cut(s) 924
BsmI GAATGC 2 cut(s) 345, 754
BsnI GGCC 8 cut(s) 59, 89, 179, 473, 597, 709, 801, 930
Bsp1286I GDGCHC 2 cut(s) 75, 587
Bsp143I GATC 6 cut(s) 268, 331, 530, 607, 640, 945
Bsp68I TCGCGA 1 cut(s) 330
BspACI CCGC 6 cut(s) 126, 129, 511, 525, 778, 914
BspANI GGCC 8 cut(s) 59, 89, 179, 473, 597, 709, 801, 930
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 3 cut(s) 135, 330, 778
BspLI GGNNCC 7 cut(s) 72, 532, 802, 918, 929, 939, 940
BspMAI CTGCAG 2 cut(s) 313, 354
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 4 cut(s) 276, 525, 538, 940
BspT107I GGYRCC 1 cut(s) 70
BspTI CTTAAG 1 cut(s) 613
BsrDI GCAATG 2 cut(s) 157, 398
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 6 cut(s) 621, 795, 884, 908, 939, 949
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 4 cut(s) 468, 486, 588, 710
BssMI GATC 6 cut(s) 268, 331, 530, 607, 640, 945
BssNI GRCGYC 1 cut(s) 719
BssT1I CCWWGG 1 cut(s) 710
Bst2UI CCWGG 3 cut(s) 56, 488, 590
Bst4CI ACNGT 2 cut(s) 116, 817
Bst6I CTCTTC 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 719
BstAFI CTTAAG 1 cut(s) 613
BstAPI GCANNNNNTGC 2 cut(s) 317, 358
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 36, 434
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 6 cut(s) 29, 271, 293, 304, 672, 852
BstFNI CGCG 3 cut(s) 135, 330, 778
BstH2I RGCGCY 1 cut(s) 621
BstHHI GCGC 2 cut(s) 620, 778
BstKTI GATC 6 cut(s) 271, 334, 533, 610, 643, 948
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 6 cut(s) 268, 331, 530, 607, 640, 945
BstMCI CGRYCG 1 cut(s) 133
BstNI CCWGG 3 cut(s) 56, 488, 590
BstNSI RCATGY 1 cut(s) 639
BstSCI CCNGG 3 cut(s) 54, 486, 588
BstSFI CTRYAG 2 cut(s) 309, 350
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 3 cut(s) 135, 330, 778
BstV1I GCAGC 6 cut(s) 167, 307, 323, 451, 760, 851
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 530
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 1 cut(s) 530
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 8 cut(s) 59, 89, 179, 473, 597, 709, 801, 930
BtgI CCRYGG 1 cut(s) 468
BtgZI GCGATG 1 cut(s) 311
BtsCI GGATG 6 cut(s) 29, 271, 293, 304, 672, 852
BtsI GCAGTG 1 cut(s) 725
BtsIMutI CAGTG 6 cut(s) 33, 121, 628, 725, 822, 915
BtuMI TCGCGA 1 cut(s) 330
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 1 cut(s) 166
CaiI CAGNNNCTG 2 cut(s) 55, 317
CfoI GCGC 2 cut(s) 620, 778
Cfr10I RCCGGY 1 cut(s) 473
Cfr13I GGNCC 5 cut(s) 508, 800, 867, 928, 938
CseI GACGC 1 cut(s) 727
Csp6I GTAC 3 cut(s) 120, 739, 829
CspCI CAANNNNNGTGG 2 cut(s) 798, 833
CviAII CATG 5 cut(s) 200, 259, 281, 416, 636
CviQI GTAC 3 cut(s) 120, 739, 829
DdeI CTNAG 2 cut(s) 36, 434
DpnI GATC 6 cut(s) 270, 333, 532, 609, 642, 947
DpnII GATC 6 cut(s) 268, 331, 530, 607, 640, 945
EaeI YGGCCR 4 cut(s) 57, 87, 471, 595
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
EciI GGCGGA 1 cut(s) 929
Eco130I CCWWGG 1 cut(s) 710
Eco47I GGWCC 3 cut(s) 508, 867, 938
Eco57I CTGAAG 1 cut(s) 424
EcoO109I RGGNCCY 3 cut(s) 800, 928, 938
EcoRII CCWGG 3 cut(s) 54, 486, 588
EcoT14I CCWWGG 1 cut(s) 710
EcoT22I ATGCAT 2 cut(s) 295, 347
ErhI CCWWGG 1 cut(s) 710
FaeI CATG 5 cut(s) 203, 262, 284, 419, 639
FaqI GGGAC 1 cut(s) 924
FatI CATG 5 cut(s) 199, 258, 280, 415, 635
FbaI TGATCA 2 cut(s) 607, 640
Fnu4HI GCNGC 8 cut(s) 127, 156, 312, 321, 465, 525, 774, 840
FokI GGATG 6 cut(s) 16, 258, 280, 291, 679, 859
Fsp4HI GCNGC 8 cut(s) 127, 156, 312, 321, 465, 525, 774, 840
FspBI CTAG 1 cut(s) 183
GlaI GCGC 2 cut(s) 619, 777
GluI GCNGC 8 cut(s) 127, 156, 312, 321, 465, 525, 774, 840
GsaI CCCAGC 1 cut(s) 747
GsuI CTGGAG 1 cut(s) 891
HaeII RGCGCY 1 cut(s) 621
HaeIII GGCC 8 cut(s) 59, 89, 179, 473, 597, 709, 801, 930
HapII CCGG 2 cut(s) 90, 474
HgaI GACGC 1 cut(s) 727
HhaI GCGC 2 cut(s) 620, 778
Hin1I GRCGYC 1 cut(s) 719
Hin1II CATG 5 cut(s) 203, 262, 284, 419, 639
Hin6I GCGC 2 cut(s) 618, 776
HinP1I GCGC 2 cut(s) 618, 776
HindIII AAGCTT 1 cut(s) 436
HinfI GANTC 4 cut(s) 106, 444, 677, 685
HpaII CCGG 2 cut(s) 90, 474
HphI GGTGA 3 cut(s) 326, 488, 665
Hpy166II GTNNAC 2 cut(s) 700, 829
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 4 cut(s) 329, 451, 577, 810
Hpy8I GTNNAC 2 cut(s) 700, 829
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 814
HpyCH4III ACNGT 2 cut(s) 116, 817
HpyCH4IV ACGT 1 cut(s) 922
HpyF3I CTNAG 2 cut(s) 36, 434
HpySE526I ACGT 1 cut(s) 922
Hsp92I GRCGYC 1 cut(s) 719
Hsp92II CATG 5 cut(s) 203, 262, 284, 419, 639
HspAI GCGC 2 cut(s) 618, 776
KflI GGGWCCC 1 cut(s) 938
Ksp22I TGATCA 2 cut(s) 607, 640
Kzo9I GATC 6 cut(s) 268, 331, 530, 607, 640, 945
LmnI GCTCC 3 cut(s) 590, 836, 916
Lsp1109I GCAGC 6 cut(s) 167, 307, 323, 451, 760, 851
LweI GCATC 4 cut(s) 261, 280, 302, 407
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 922
MaeIII GTNAC 3 cut(s) 418, 476, 888
MalI GATC 6 cut(s) 270, 333, 532, 609, 642, 947
MboI GATC 6 cut(s) 268, 331, 530, 607, 640, 945
MboII GAAGA 2 cut(s) 105, 439
MflI RGATCY 1 cut(s) 530
MhlI GDGCHC 2 cut(s) 75, 587
MlsI TGGCCA 2 cut(s) 59, 597
MluCI AATT 5 cut(s) 194, 226, 246, 367, 563
MluNI TGGCCA 2 cut(s) 59, 597
MlyI GAGTC 2 cut(s) 438, 686
MnlI CCTC 8 cut(s) 28, 190, 285, 546, 826, 837, 858, 915
Mox20I TGGCCA 2 cut(s) 59, 597
Mph1103I ATGCAT 2 cut(s) 295, 347
MscI TGGCCA 2 cut(s) 59, 597
MseI TTAA 1 cut(s) 614
MslI CAYNNNNRTG 5 cut(s) 68, 257, 263, 285, 648
Msp20I TGGCCA 2 cut(s) 59, 597
MspA1I CMGCKG 1 cut(s) 527
MspCI CTTAAG 1 cut(s) 613
MspI CCGG 2 cut(s) 90, 474
MspR9I CCNGG 3 cut(s) 56, 488, 590
Mva1269I GAATGC 2 cut(s) 345, 754
MvaI CCWGG 3 cut(s) 56, 488, 590
MvnI CGCG 3 cut(s) 135, 330, 778
NdeII GATC 6 cut(s) 268, 331, 530, 607, 640, 945
NlaIII CATG 5 cut(s) 203, 262, 284, 419, 639
NlaIV GGNNCC 7 cut(s) 72, 532, 802, 918, 929, 939, 940
NmuCI GTSAC 1 cut(s) 476
NruI TCGCGA 1 cut(s) 330
NsiI ATGCAT 2 cut(s) 295, 347
NspI RCATGY 1 cut(s) 639
PctI GAATGC 2 cut(s) 345, 754
PfeI GAWTC 2 cut(s) 106, 685
Pfl23II CGTACG 1 cut(s) 738
PkrI GCNGC 8 cut(s) 128, 157, 313, 322, 466, 526, 775, 841
PleI GAGTC 2 cut(s) 438, 685
PpsI GAGTC 2 cut(s) 438, 685
PpuMI RGGWCCY 1 cut(s) 938
Psp5II RGGWCCY 1 cut(s) 938
Psp6I CCWGG 3 cut(s) 54, 486, 588
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 3 cut(s) 54, 486, 588
PspLI CGTACG 1 cut(s) 738
PspN4I GGNNCC 7 cut(s) 72, 532, 802, 918, 929, 939, 940
PspPI GGNCC 5 cut(s) 508, 800, 867, 928, 938
PspPPI RGGWCCY 1 cut(s) 938
PstI CTGCAG 2 cut(s) 313, 354
PstNI CAGNNNCTG 2 cut(s) 55, 317
PsuI RGATCY 1 cut(s) 530
RruI TCGCGA 1 cut(s) 330
RsaI GTAC 3 cut(s) 121, 740, 830
RsaNI GTAC 3 cut(s) 120, 739, 829
RseI CAYNNNNRTG 5 cut(s) 68, 257, 263, 285, 648
SaqAI TTAA 1 cut(s) 614
SatI GCNGC 8 cut(s) 127, 156, 312, 321, 465, 525, 774, 840
Sau3AI GATC 6 cut(s) 268, 331, 530, 607, 640, 945
Sau96I GGNCC 5 cut(s) 508, 800, 867, 928, 938
SchI GAGTC 2 cut(s) 438, 686
ScrFI CCNGG 3 cut(s) 56, 488, 590
SduI GDGCHC 2 cut(s) 75, 587
SetI ASST 8 cut(s) 20, 235, 316, 357, 440, 594, 869, 925
SfaNI GCATC 4 cut(s) 261, 280, 302, 407
SfcI CTRYAG 2 cut(s) 309, 350
SinI GGWCC 3 cut(s) 508, 867, 938
SmiMI CAYNNNNRTG 5 cut(s) 68, 257, 263, 285, 648
SmlI CTYRAG 4 cut(s) 44, 575, 613, 808
SmoI CTYRAG 4 cut(s) 44, 575, 613, 808
Sse9I AATT 5 cut(s) 194, 226, 246, 367, 563
SsiI CCGC 6 cut(s) 126, 129, 511, 525, 778, 914
SspI AATATT 1 cut(s) 519
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 3 cut(s) 54, 486, 588
StyI CCWWGG 1 cut(s) 710
TaaI ACNGT 2 cut(s) 116, 817
TaiI ACGT 1 cut(s) 925
TaqI TCGA 4 cut(s) 11, 104, 300, 876
TasI AATT 5 cut(s) 194, 226, 246, 367, 563
TauI GCSGC 2 cut(s) 129, 527
TfiI GAWTC 2 cut(s) 106, 685
Tru1I TTAA 1 cut(s) 614
Tru9I TTAA 1 cut(s) 614
TscAI CASTG 6 cut(s) 40, 121, 628, 732, 822, 915
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 6 cut(s) 155, 311, 320, 464, 773, 839
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 207, 297
TspGWI ACGGA 2 cut(s) 859, 866
TspRI CASTG 6 cut(s) 40, 121, 628, 732, 822, 915
Vha464I CTTAAG 1 cut(s) 613
VpaK11BI GGWCC 3 cut(s) 508, 867, 938
XceI RCATGY 1 cut(s) 639
XspI CTAG 1 cut(s) 183
Zsp2I ATGCAT 2 cut(s) 295, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.