Rroxscaffold_7G00167750

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0031134
Physical Location & Seq
Reverse (-)
8796084 .. 8796568
485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00167750.1

Sequence Viewer

Length: 369 bp
ATGCTTACACCATCAATGGCCAACCCGGCGATTTTCTTCCATGCTCCAAAAGCACATATATATACAACATGGCGTCGTAAGGTGGATTATGGCAAGACGTATCTCCTTCGCTTGGTGAATGCTAACATCGATGAAGAGTTTTCTTTGCGATTGCAGAACACAACCTCACCGTGGTCGGACAGGACGGAGCCTATACTAAACCCATCACCACAAGATACATATATAGTGGTAACCCCTGGACAGACAATGGACGTCTTGCTCACTGCAAATTCGACACCAGGGCTCTATTACATGGGCGGCAGACAATACGCAAGTACTACAAAGGACACTGGTTTTGACCATGAAAATGCTACTGCAATCTTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

122

Amino Acids

13.77

Weight (kDa)

6.25

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 22 - 122 4.8e-11 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031134)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001476.1_g000005
rosa_roxburghii Rroxscaffold_7G00167750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
AciI CCGC 1 cut(s) 297
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 268
AcyI GRCGYC 2 cut(s) 73, 252
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 2 cut(s) 112, 171
AjnI CCWGG 2 cut(s) 235, 277
AoxI GGCC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 268
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 3 cut(s) 127, 159, 198
BalI TGGCCA 1 cut(s) 20
BanII GRGCYC 1 cut(s) 285
BccI CCATC 2 cut(s) 19, 211
BciT130I CCWGG 2 cut(s) 237, 279
BcnI CCSGG 1 cut(s) 26
BglI GCCNNNNNGGC 1 cut(s) 26
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 3 cut(s) 26, 237, 279
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 3 cut(s) 26, 237, 279
BpuMI CCSGG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 129
BsaHI GRCGYC 2 cut(s) 73, 252
BsaJI CCNNGG 3 cut(s) 170, 235, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 171
Bse1I ACTGG 1 cut(s) 334
BseBI CCWGG 2 cut(s) 237, 279
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 3 cut(s) 170, 235, 278
BseLI CCNNNNNNNGG 2 cut(s) 112, 171
BseNI ACTGG 1 cut(s) 334
BshFI GGCC 1 cut(s) 20
BshVI ATCGAT 1 cut(s) 129
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 112, 171
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 285
BspACI CCGC 1 cut(s) 297
BspANI GGCC 1 cut(s) 20
BspDI ATCGAT 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 189
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 3 cut(s) 170, 235, 278
BssNI GRCGYC 2 cut(s) 73, 252
Bst2UI CCWGG 2 cut(s) 237, 279
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 2 cut(s) 73, 252
BstDSI CCRYGG 1 cut(s) 170
BstEII GGTNACC 1 cut(s) 229
BstMWI GCNNNNNNNGC 2 cut(s) 26, 50
BstNI CCWGG 2 cut(s) 237, 279
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 3 cut(s) 24, 235, 277
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 1 cut(s) 20
BsuTUI ATCGAT 1 cut(s) 129
BtgI CCRYGG 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 261, 327
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 315
CviAII CATG 4 cut(s) 41, 69, 292, 341
CviJI RGCY 3 cut(s) 20, 190, 283
CviKI_1 RGCY 3 cut(s) 20, 190, 283
CviQI GTAC 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 285
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 235, 277
EcoT38I GRGCYC 1 cut(s) 285
FaeI CATG 4 cut(s) 44, 72, 295, 344
FatI CATG 4 cut(s) 40, 68, 291, 340
Fnu4HI GCNGC 1 cut(s) 298
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 298
GluI GCNGC 1 cut(s) 298
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 62
Hin1I GRCGYC 2 cut(s) 73, 252
Hin1II CATG 4 cut(s) 44, 72, 295, 344
HpaII CCGG 1 cut(s) 26
HphI GGTGA 3 cut(s) 127, 159, 198
Hpy188I TCNGA 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4IV ACGT 2 cut(s) 98, 252
HpyCH4V TGCA 3 cut(s) 154, 266, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 50
HpySE526I ACGT 2 cut(s) 98, 252
Hsp92I GRCGYC 2 cut(s) 73, 252
Hsp92II CATG 4 cut(s) 44, 72, 295, 344
LmnI GCTCC 2 cut(s) 49, 187
LpnPI CCDG 7 cut(s) 39, 166, 222, 249, 264, 291, 315
MaeII ACGT 2 cut(s) 98, 252
MaeIII GTNAC 1 cut(s) 229
MboII GAAGA 2 cut(s) 28, 146
MhlI GDGCHC 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 1 cut(s) 268
MluNI TGGCCA 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 1 cut(s) 175
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 345
Msp20I TGGCCA 1 cut(s) 20
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 3 cut(s) 26, 237, 279
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 237, 279
MwoI GCNNNNNNNGC 2 cut(s) 26, 50
NciI CCSGG 1 cut(s) 26
NlaIII CATG 4 cut(s) 44, 72, 295, 344
NlaIV GGNNCC 1 cut(s) 189
PctI GAATGC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 235, 277
PspEI GGTNACC 1 cut(s) 229
PspGI CCWGG 2 cut(s) 235, 277
PspN4I GGNNCC 1 cut(s) 189
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 345
SatI GCNGC 1 cut(s) 298
ScaI AGTACT 1 cut(s) 316
ScrFI CCNGG 3 cut(s) 26, 237, 279
SduI GDGCHC 1 cut(s) 285
SetI ASST 4 cut(s) 84, 101, 167, 255
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 1 cut(s) 268
SsiI CCGC 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 24, 235, 277
TaaI ACNGT 1 cut(s) 171
TaiI ACGT 2 cut(s) 101, 255
TaqI TCGA 2 cut(s) 129, 272
TasI AATT 1 cut(s) 268
TatI WGTACW 1 cut(s) 314
TauI GCSGC 1 cut(s) 300
TscAI CASTG 2 cut(s) 268, 334
TspDTI ATGAA 2 cut(s) 147, 357
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 2 cut(s) 268, 334
XapI RAATTY 1 cut(s) 268
ZraI GACGTC 1 cut(s) 253
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.