Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018205

Physical Location & Seq

Genomic Coordinates Reverse (-)

21961314 .. 21961913

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00182860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTTTGTGGGCGCCAGCGGCGTCGGAAAGTCTACTCTAATGAGAAAATTCTCCCCCAATGGTTGCCACGCCGAAGTCATGAAGACTTATGGGATAGAATACACCGCAAGAACCATTGAACTGGGCAATGAACTGGTCAAGGTGCAAATCTGGAACACAGCTATTCAGGAGCGGTTTCGAACGATTCCGAAAACCTTCTATCAAGCGGCCAAAGGGATTCTATTGGTGTATGATGTCACTAATCTTTTGTCTTTCACCGAAATCAGTAACTGGCTTCGCAACATCAAAGAAAATAATCCCAATATCAAGATGATACTGGTGGGAAACAAGGCTGATAAGGATGAAAGCGAAAGGGCTGTGAGCACTGCTAGAGGTCAAGCTCTTGCTGAAGAGTACGACATCGAGTTCTTTGAAACCAGTGCCGAGACGAACATGAATGTAGAAGAGGTCTTCTTTTCAATAGCCAGGGATATCATGCTGGAATCAAATGCTTCCGGGGTCACTCATGAGCCTCAGACATTTGACATTAACCAGCTAAACAAAGGATTTGCACATGATAGATTGGGGAATAAGTTACAGAGAAGCCAGACTTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

199

Amino Acids

22.47

Weight (kDa)

5.71

Isoelectric Point (pI)

41.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	1 - 112	5.7e-25	Ras of Complex, Roc, domain of DAPkinase
Ras	PF00071	2 - 159	1.2e-47	Ras family
Arf	PF00025	2 - 154	7.7e-10	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0018205)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0285641
rosa_multiflora	Rmu_co8220906.1_g000001 Rmu_sc0001356.1_g000021 Rmu_sc0001989.1_g000011
rosa_roxburghii	Rroxscaffold_7G00182860
rosa_rugosa	Rorug06G0176300
rosa_samantha	Rh6AG287800 Rh6BG289300 Rh6CG290400 Rh6DG283100
rosa_wichuraiana	Rw6G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccBSI	CCGCTC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	4 cut(s)	18, 105, 172, 206
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	408
AcyI	GRCGYC	2 cut(s)	12, 21
AfaI	GTAC	1 cut(s)	395
AgsI	TTSAA	3 cut(s)	119, 413, 459
AjnI	CCWGG	1 cut(s)	464
AluBI	AGCT	3 cut(s)	161, 380, 535
AluI	AGCT	3 cut(s)	161, 380, 535
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	1 cut(s)	419
AlwNI	CAGNNNCTG	1 cut(s)	270
AoxI	GGCC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	496
AsuHPI	GGTGA	1 cut(s)	247
AsuII	TTCGAA	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	89, 442
Bbv12I	GWGCWC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	15
BisI	GCNGC	2 cut(s)	19, 207
BlsI	GCNGC	2 cut(s)	20, 208
Bme1390I	CCNGG	2 cut(s)	466, 496
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	2 cut(s)	466, 496
BmrI	ACTGGG	1 cut(s)	131
BmuI	ACTGGG	1 cut(s)	131
BpiI	GAAGAC	2 cut(s)	89, 442
Bpu14I	TTCGAA	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	496
BsaHI	GRCGYC	2 cut(s)	12, 21
BsaJI	CCNNGG	2 cut(s)	465, 495
Bse1I	ACTGG	5 cut(s)	126, 138, 275, 321, 417
Bse3DI	GCAATG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	465, 495
BseGI	GGATG	1 cut(s)	346
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	5 cut(s)	126, 138, 275, 321, 417
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	419
BsmBI	CGTCTC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	365
BspACI	CCGC	4 cut(s)	18, 105, 172, 206
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	526
BspHI	TCATGA	2 cut(s)	78, 505
BspLI	GGNNCC	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	178
BspT107I	GGYRCC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	5 cut(s)	126, 138, 275, 321, 417
BssECI	CCNNGG	2 cut(s)	465, 495
BssNI	GRCGYC	2 cut(s)	12, 21
Bst2UI	CCWGG	1 cut(s)	466
Bst6I	CTCTTC	2 cut(s)	384, 438
BstACI	GRCGYC	2 cut(s)	12, 21
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	513
BstF5I	GGATG	1 cut(s)	346
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	419
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	2 cut(s)	464, 494
BstV2I	GAAGAC	2 cut(s)	89, 442
BstXI	CCANNNNNNTGG	2 cut(s)	121, 593
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	363, 424
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	270
CciI	TCATGA	2 cut(s)	78, 505
CfoI	GCGC	1 cut(s)	14
CseI	GACGC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	5 cut(s)	79, 433, 475, 506, 554
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	1 cut(s)	513
DinI	GGCGCC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	384, 438
EarI	CTCTTC	2 cut(s)	384, 438
Eco32I	GATATC	1 cut(s)	472
Eco57I	CTGAAG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	464
EcoRV	GATATC	1 cut(s)	472
EgeI	GGCGCC	1 cut(s)	13
EheI	GGCGCC	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	419
FaeI	CATG	5 cut(s)	82, 436, 478, 509, 557
FaiI	YATR	7 cut(s)	80, 90, 231, 434, 476, 507, 555
FalI	AAGNNNNNCTT	1 cut(s)	574
FatI	CATG	5 cut(s)	78, 432, 474, 505, 553
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	2 cut(s)	19, 207
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	19, 207
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	19, 207
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	495
HgaI	GACGC	1 cut(s)	10
HhaI	GCGC	1 cut(s)	14
Hin1I	GRCGYC	2 cut(s)	12, 21
Hin1II	CATG	5 cut(s)	82, 436, 478, 509, 557
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	184, 217, 482
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	26, 189, 516
Hpy188III	TCNNGA	5 cut(s)	79, 151, 167, 307, 506
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	145, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	513
Hsp92I	GRCGYC	2 cut(s)	12, 21
Hsp92II	CATG	5 cut(s)	82, 436, 478, 509, 557
HspAI	GCGC	1 cut(s)	12
KasI	GGCGCC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	4 cut(s)	235, 266, 499, 573
MbiI	CCGCTC	1 cut(s)	172
MboII	GAAGA	4 cut(s)	94, 401, 442, 455
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	1 cut(s)	47
Mly113I	GGCGCC	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	3 cut(s)	365, 439, 522
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	2 cut(s)	528, 598
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	2 cut(s)	466, 496
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	18
NarI	GGCGCC	1 cut(s)	12
NciI	CCSGG	1 cut(s)	496
NlaIII	CATG	5 cut(s)	82, 436, 478, 509, 557
NlaIV	GGNNCC	1 cut(s)	13
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	235, 499
NspV	TTCGAA	1 cut(s)	178
PagI	TCATGA	2 cut(s)	78, 505
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	3 cut(s)	184, 217, 482
PkrI	GCNGC	2 cut(s)	20, 208
PluTI	GGCGCC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	270
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SaqAI	TTAA	2 cut(s)	528, 598
SatI	GCNGC	2 cut(s)	19, 207
ScrFI	CCNGG	2 cut(s)	466, 496
SduI	GDGCHC	1 cut(s)	365
SetI	ASST	7 cut(s)	144, 163, 197, 376, 382, 450, 537
SfoI	GGCGCC	1 cut(s)	13
SfuI	TTCGAA	1 cut(s)	178
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	4 cut(s)	18, 105, 172, 206
SspDI	GGCGCC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	464, 494
TaqI	TCGA	2 cut(s)	178, 402
TasI	AATT	1 cut(s)	47
TauI	GCSGC	2 cut(s)	21, 209
TfiI	GAWTC	3 cut(s)	184, 217, 482
Tru1I	TTAA	2 cut(s)	528, 598
Tru9I	TTAA	2 cut(s)	528, 598
TscAI	CASTG	2 cut(s)	370, 424
TseFI	GTSAC	2 cut(s)	235, 499
Tsp45I	GTSAC	2 cut(s)	235, 499
TspDTI	ATGAA	4 cut(s)	95, 144, 357, 449
TspRI	CASTG	2 cut(s)	370, 424
XapI	RAATTY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.