Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0018205

Physical Location & Seq

Genomic Coordinates Forward (+)

48400599 .. 48401123

Gene Structure 525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG287800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCAGAGCCACACGAGAGTCTTGTCAAGCTCATGGTTGTCGGCAACAGAGACGTCGGAAAGTCTTCTCTGATGAGAAAATTCTCTCCCTGTGGTTCCCACACCGAACTCCTGAAGCCTTATGGGATAGAATACACCGCAAGAACCATTCAACTAGACAATGAACTGGTCAAGTTGCAAATCTGGAACGCAGCTGTTCAGGAACGGTTTCGAACGATTCCGAAAACCTTTTATCAAGGGGCCAAGGGGCTTCTATTGGTGTATGATGTCACTAATCAATGGTCTTTCACCGAAATCAGTAAATGGCTTCGCAACATCAAAGAAGATCCTGCCAATAATATCAAGAAGATACTGGTGGGGAACAAGGCTGATAAGGACGAGAGCGAAAGGGCTGTGAGCACTGGTAGAGGTCAAGCTCTTGCTAAAGAGTACGACATTGAGTTCTTTGAAACCAGTGCGGAGACGAACATGAATGTGGAGGAGGTCTTCTTTTCAATAGCCCGGGATATCATGCTACACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

174

Amino Acids

19.95

Weight (kDa)

6.33

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 166	7.4e-09	ADP-ribosylation factor family
Ras	PF00071	10 - 171	4.1e-46	Ras family
Roc	PF08477	10 - 124	4e-22	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018205)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0285641
rosa_multiflora	Rmu_co8220906.1_g000001 Rmu_sc0001356.1_g000021 Rmu_sc0001989.1_g000011
rosa_roxburghii	Rroxscaffold_7G00182860
rosa_rugosa	Rorug06G0176300
rosa_samantha	Rh6AG287800 Rh6BG289300 Rh6CG290400 Rh6DG283100
rosa_wichuraiana	Rw6G024750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	57
AciI	CCGC	2 cut(s)	138, 458
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	1 cut(s)	431
AgsI	TTSAA	3 cut(s)	152, 449, 495
AluBI	AGCT	3 cut(s)	31, 194, 416
AluI	AGCT	3 cut(s)	31, 194, 416
Alw21I	GWGCWC	1 cut(s)	401
Alw26I	GTCTC	2 cut(s)	45, 455
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	501
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	80
Asp700I	GAANNNNTTC	2 cut(s)	64, 207
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	2 cut(s)	502, 503
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	211
AvaI	CYCGRG	1 cut(s)	501
BauI	CACGAG	1 cut(s)	14
BbsI	GAAGAC	2 cut(s)	57, 478
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	203
BcnI	CCSGG	2 cut(s)	502, 503
BcoDI	GTCTC	2 cut(s)	45, 455
BfaI	CTAG	2 cut(s)	155, 523
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	502, 503
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	2 cut(s)	97, 241
BmrFI	CCNGG	2 cut(s)	502, 503
BpiI	GAAGAC	2 cut(s)	57, 478
Bpu14I	TTCGAA	1 cut(s)	211
BpuMI	CCSGG	2 cut(s)	502, 503
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	243, 501
Bse1I	ACTGG	4 cut(s)	171, 357, 406, 453
BseDI	CCNNGG	2 cut(s)	243, 501
BseNI	ACTGG	4 cut(s)	171, 357, 406, 453
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	502
BsmAI	GTCTC	2 cut(s)	45, 455
BsmBI	CGTCTC	2 cut(s)	45, 455
BsnI	GGCC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	501
Bsp119I	TTCGAA	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	2 cut(s)	138, 458
BspANI	GGCC	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	97, 241
BspPI	GGATC	1 cut(s)	320
BspT104I	TTCGAA	1 cut(s)	211
BsrI	ACTGG	4 cut(s)	171, 357, 406, 453
BssECI	CCNNGG	2 cut(s)	243, 501
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	54
BstBI	TTCGAA	1 cut(s)	211
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	2 cut(s)	45, 455
BstMBI	GATC	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	500, 501
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	2 cut(s)	57, 478
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	399, 460
Cfr13I	GGNCC	1 cut(s)	240
Cfr9I	CCCGGG	1 cut(s)	501
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	3 cut(s)	34, 469, 511
CviQI	GTAC	1 cut(s)	430
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	2 cut(s)	45, 455
FaeI	CATG	3 cut(s)	37, 472, 514
FaiI	YATR	5 cut(s)	35, 123, 264, 470, 512
FatI	CATG	3 cut(s)	33, 468, 510
Fnu4HI	GCNGC	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	2 cut(s)	155, 523
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	502
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	37, 472, 514
HinfI	GANTC	2 cut(s)	19, 217
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	1 cut(s)	280
Hpy188I	TCNGA	3 cut(s)	59, 72, 222
Hpy188III	TCNNGA	4 cut(s)	112, 184, 200, 343
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	178
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	37, 472, 514
Kzo9I	GATC	1 cut(s)	325
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	2 cut(s)	155, 523
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	4 cut(s)	57, 335, 358, 478
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	1 cut(s)	80
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	3 cut(s)	401, 472, 475
MroXI	GAANNNNTTC	2 cut(s)	64, 207
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	502, 503
NciI	CCSGG	2 cut(s)	502, 503
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	3 cut(s)	37, 472, 514
NlaIV	GGNNCC	2 cut(s)	97, 241
NmuCI	GTSAC	1 cut(s)	268
NspV	TTCGAA	1 cut(s)	211
PdmI	GAANNNNTTC	2 cut(s)	64, 207
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	97, 241
PspPI	GGNCC	1 cut(s)	240
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	473
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	502, 503
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	7 cut(s)	33, 57, 196, 230, 412, 418, 486
SfuI	TTCGAA	1 cut(s)	211
SmaI	CCCGGG	1 cut(s)	503
SmiMI	CAYNNNNRTG	1 cut(s)	473
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	2 cut(s)	138, 458
SspMI	CTAG	2 cut(s)	155, 523
StyD4I	CCNGG	2 cut(s)	500, 501
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	211
TasI	AATT	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	217
TscAI	CASTG	2 cut(s)	406, 460
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	177, 485
TspMI	CCCGGG	1 cut(s)	501
TspRI	CASTG	2 cut(s)	406, 460
XapI	RAATTY	1 cut(s)	80
XmaI	CCCGGG	1 cut(s)	501
XmnI	GAANNNNTTC	2 cut(s)	64, 207
XspI	CTAG	2 cut(s)	155, 523
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.