Rroxscaffold_7G00192470

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
33663267 .. 33663749
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192470.1

Sequence Viewer

Length: 384 bp
ATGCATGACCTGATCCAAGACTTGGGATTGCATATTGTTCGTAAAGAGTGTCCTATGGAGCCTGGTCGACGCAGTCGGTTGTGGCATCAAAAAGATATCATGGAAGTACTAGCATACAATAAGGGAACAGAAGCAATTGAAGGCATACTCTTAAACTTGCCTGATGATCATCAATCAACAATGATAGAAGATCGCTTGAATCCTAAAGCCTTCTCCAAGATGAGCAATCTGAGGTTTCTCAAAATTCACAATTTGAGGATGAGCCTTCCTCTAATCTCCAAATATCTTCCTGATTCCTTGAGGCATTTCGAATGGAGTTCTTCTTTTCCAAGCATAGATGATCAAGATGGTGCTAGTGAGGATTGGGATGAGCAGAGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.91

Weight (kDa)

5.47

Isoelectric Point (pI)

83.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0031291)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004048.1_g000001
rosa_roxburghii Rroxscaffold_7G00192470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 22
AccI GTMKAC 1 cut(s) 67
AclWI GGATC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 243
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 2 cut(s) 140, 199
AjnI CCWGG 1 cut(s) 61
AlwI GGATC 1 cut(s) 7
ApoI RAATTY 1 cut(s) 243
AsuII TTCGAA 1 cut(s) 309
BccI CCATC 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 2 cut(s) 166, 340
BfaI CTAG 2 cut(s) 110, 354
BmcAI AGTACT 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 94
BplI GAGNNNNNCTC 2 cut(s) 253, 285
Bpu14I TTCGAA 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 319
BsaBI GATNNNNATC 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 1 cut(s) 63
BseGI GGATG 2 cut(s) 264, 373
BseJI GATNNNNATC 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 22
Bsp119I TTCGAA 1 cut(s) 309
Bsp143I GATC 4 cut(s) 12, 166, 190, 340
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 1 cut(s) 7
BspT104I TTCGAA 1 cut(s) 309
BssMI GATC 4 cut(s) 12, 166, 190, 340
Bst2UI CCWGG 1 cut(s) 63
BstBI TTCGAA 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 2 cut(s) 264, 373
BstKTI GATC 4 cut(s) 15, 169, 193, 343
BstMBI GATC 4 cut(s) 12, 166, 190, 340
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BtsCI GGATG 2 cut(s) 264, 373
CseI GACGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 107
CviAII CATG 2 cut(s) 5, 100
CviJI RGCY 3 cut(s) 61, 209, 264
CviKI_1 RGCY 3 cut(s) 61, 209, 264
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 230
DpnI GATC 4 cut(s) 14, 168, 192, 342
DpnII GATC 4 cut(s) 12, 166, 190, 340
Eco32I GATATC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 61
EcoRV GATATC 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 103
FaiI YATR 7 cut(s) 6, 33, 56, 101, 115, 146, 335
FatI CATG 2 cut(s) 4, 99
FbaI TGATCA 2 cut(s) 166, 340
FblI GTMKAC 1 cut(s) 67
FokI GGATG 2 cut(s) 271, 380
FspBI CTAG 2 cut(s) 110, 354
HgaI GACGC 1 cut(s) 78
Hin1II CATG 2 cut(s) 8, 103
HincII GTYRAC 1 cut(s) 68
HindII GTYRAC 1 cut(s) 68
HinfI GANTC 2 cut(s) 199, 293
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 2 cut(s) 290, 344
Hpy8I GTNNAC 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 3 cut(s) 134, 220, 275
HpyCH4V TGCA 2 cut(s) 4, 31
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 2 cut(s) 8, 103
Ksp22I TGATCA 2 cut(s) 166, 340
Kzo9I GATC 4 cut(s) 12, 166, 190, 340
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 5 cut(s) 23, 48, 75, 174, 303
LweI GCATC 1 cut(s) 94
MaeI CTAG 2 cut(s) 110, 354
MalI GATC 4 cut(s) 14, 168, 192, 342
MboI GATC 4 cut(s) 12, 166, 190, 340
MboII GAAGA 3 cut(s) 200, 278, 312
MfeI CAATTG 1 cut(s) 135
MluCI AATT 3 cut(s) 135, 243, 250
MnlI CCTC 6 cut(s) 225, 249, 279, 294, 352, 369
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 63
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 63
NdeII GATC 4 cut(s) 12, 166, 190, 340
NlaIII CATG 2 cut(s) 8, 103
NlaIV GGNNCC 1 cut(s) 60
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 309
PfeI GAWTC 2 cut(s) 199, 293
PflFI GACNNNGTC 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 60
PsyI GACNNNGTC 1 cut(s) 72
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SalI GTCGAC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 152
Sau3AI GATC 4 cut(s) 12, 166, 190, 340
ScaI AGTACT 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 63
SetI ASST 2 cut(s) 12, 236
SfaNI GCATC 1 cut(s) 94
SfuI TTCGAA 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
Sse9I AATT 3 cut(s) 135, 243, 250
SspMI CTAG 2 cut(s) 110, 354
StyD4I CCNGG 1 cut(s) 61
TaqI TCGA 2 cut(s) 67, 309
TasI AATT 3 cut(s) 135, 243, 250
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 2 cut(s) 199, 293
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 22
XapI RAATTY 1 cut(s) 243
XmiI GTMKAC 1 cut(s) 67
XspI CTAG 2 cut(s) 110, 354
ZrmI AGTACT 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.