Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0032232

Physical Location & Seq

Genomic Coordinates Forward (+)

37439642 .. 37440948

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00195180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGATGATTTTGAGGTGGAAGACATGGTCCGCACGAATTCTCATGCCCGTATTACTACGAGGACTTTGACGTCGCGTCGTTGTTGTATCTCTCCTCTGTTGGGTTTCAGAGACGTGGAGGCTTACCCAGATGACAAGCTCAGTGGCCAAGTATCATGCAACCCCTTTGTTCTATCTCTTCCCCAAAAACCATTCACCTTCATCTTCAACCTCTCTCCTTCTCTAATGGACTTTTTCAGACCCGAAAGCTCAGACCCAGAATGGAAGAGAAGATTTGCTTTATTGTCATGGAGGGTCAAGAAGAAGGGGATACGGATGGCCAAGATTCACGAGCCAAACAAGCGCTTCCGGATTTGGCTCGGGTCGTACCCGACTCCGGTGATAGCTGCCCTGGAAGAAGAAGATTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

137

Amino Acids

16.0

Weight (kDa)

8.88

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032232)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_7G00195180
rosa_samantha	Rh2BG445300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	70
AatII	GACGTC	1 cut(s)	74
AccII	CGCG	1 cut(s)	76
AccIII	TCCGGA	1 cut(s)	348
AciI	CCGC	1 cut(s)	31
AcoI	YGGCCR	2 cut(s)	145, 318
AcsI	RAATTY	1 cut(s)	37
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	1 cut(s)	368
AfeI	AGCGCT	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	101, 376
AgsI	TTSAA	1 cut(s)	208
AhdI	GACNNNNNGTC	1 cut(s)	75
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	3 cut(s)	139, 249, 386
AluI	AGCT	3 cut(s)	139, 249, 386
Alw26I	GTCTC	1 cut(s)	105
Ama87I	CYCGRG	1 cut(s)	359
Aor13HI	TCCGGA	1 cut(s)	348
Aor51HI	AGCGCT	1 cut(s)	344
AoxI	GGCC	2 cut(s)	145, 318
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	187, 391
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	28
BalI	TGGCCA	2 cut(s)	147, 320
BauI	CACGAG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	392
BciVI	GTATCC	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	346
BfuI	GTATCC	1 cut(s)	303
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	392
Bme18I	GGWCC	1 cut(s)	28
BmeRI	GACNNNNNGTC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	2 cut(s)	348, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 376
BseAI	TCCGGA	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	10, 321
BseLI	CCNNNNNNNGG	2 cut(s)	101, 376
BseMII	CTCAG	2 cut(s)	154, 264
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	373
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	147, 320
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	349, 377
BslI	CCNNNNNNNGG	2 cut(s)	101, 376
BsmAI	GTCTC	1 cut(s)	105
BsmBI	CGTCTC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	147, 320
BsoBI	CYCGRG	1 cut(s)	359
Bsp13I	TCCGGA	1 cut(s)	348
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	2 cut(s)	147, 320
BspCNI	CTCAG	2 cut(s)	153, 263
BspEI	TCCGGA	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	390
BssNI	GRCGYC	1 cut(s)	71
BssSI	CACGAG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	392
Bst6I	CTCTTC	2 cut(s)	183, 260
BstACI	GRCGYC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	140, 250
BstF5I	GGATG	2 cut(s)	10, 321
BstFNI	CGCG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	147, 320
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	10, 321
BtsIMutI	CAGTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	367
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	4 cut(s)	25, 44, 156, 288
CviJI	RGCY	8 cut(s)	122, 139, 147, 249, 320, 334, 358, 386
CviKI_1	RGCY	8 cut(s)	122, 139, 147, 249, 320, 334, 358, 386
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	140, 250
DrdI	GACNNNNNNGTC	1 cut(s)	70
DriI	GACNNNNNGTC	1 cut(s)	75
DseDI	GACNNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	2 cut(s)	145, 318
Eam1104I	CTCTTC	2 cut(s)	183, 260
Eam1105I	GACNNNNNGTC	1 cut(s)	75
EarI	CTCTTC	2 cut(s)	183, 260
Eco47I	GGWCC	1 cut(s)	28
Eco47III	AGCGCT	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	4 cut(s)	28, 47, 159, 291
FaiI	YATR	4 cut(s)	26, 45, 157, 289
FalI	AAGNNNNNCTT	2 cut(s)	262, 294
FatI	CATG	4 cut(s)	24, 43, 155, 287
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	2 cut(s)	17, 328
Fsp4HI	GCNGC	1 cut(s)	387
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	2 cut(s)	147, 320
HapII	CCGG	2 cut(s)	349, 377
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	1 cut(s)	345
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	28, 47, 159, 291
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	325, 373
HpaII	CCGG	2 cut(s)	349, 377
HphI	GGTGA	2 cut(s)	187, 391
Hpy188I	TCNGA	3 cut(s)	110, 239, 253
Hpy188III	TCNNGA	3 cut(s)	298, 329, 349
Hpy99I	CGWCG	2 cut(s)	76, 81
HpyAV	CCTTC	3 cut(s)	208, 228, 298
HpyCH4IV	ACGT	2 cut(s)	71, 114
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	2 cut(s)	140, 250
HpySE526I	ACGT	2 cut(s)	71, 114
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	4 cut(s)	28, 47, 159, 291
HspAI	GCGC	1 cut(s)	343
Kpn2I	TCCGGA	1 cut(s)	348
LpnPI	CCDG	6 cut(s)	141, 270, 362, 377, 390, 404
Lsp1109I	GCAGC	1 cut(s)	373
MaeII	ACGT	2 cut(s)	71, 114
MboII	GAAGA	9 cut(s)	32, 170, 196, 277, 282, 313, 407, 410, 413
MlsI	TGGCCA	2 cut(s)	147, 320
MluCI	AATT	1 cut(s)	37
MluNI	TGGCCA	2 cut(s)	147, 320
MlyI	GAGTC	1 cut(s)	367
MnlI	CCTC	6 cut(s)	7, 54, 105, 112, 221, 285
Mox20I	TGGCCA	2 cut(s)	147, 320
MroI	TCCGGA	1 cut(s)	348
MscI	TGGCCA	2 cut(s)	147, 320
MseI	TTAA	1 cut(s)	412
Msp20I	TGGCCA	2 cut(s)	147, 320
MspI	CCGG	2 cut(s)	349, 377
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	340
NlaIII	CATG	4 cut(s)	28, 47, 159, 291
PfeI	GAWTC	1 cut(s)	325
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	28
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	412
SatI	GCNGC	1 cut(s)	387
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	392
SetI	ASST	8 cut(s)	18, 74, 117, 141, 200, 213, 251, 388
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	1 cut(s)	31
StyD4I	CCNGG	1 cut(s)	390
TaiI	ACGT	2 cut(s)	74, 117
TasI	AATT	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	190
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	1 cut(s)	37
ZraI	GACGTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.