Rh2BG445300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
62987790 .. 62988114
325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG445300.1

Sequence Viewer

Length: 216 bp
ATGATTGACATTGATGACAAGCTCAGTGGCCAAGTAGAATGCAACACCTTGCCTCCCTCTCTTCCCCGGAAACCACTCACCTTCATCTTCAACCTCTATCCTTCTCTAGTTCACTTTTTCATACCCGAAAGCTCAGACCCAGAACAGAAGAATTTAGGGTCAAGAAGAAGCGACGGCCAATACGAAGCGATGAGCCGTACAAGGGGATATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.06

Weight (kDa)

5.65

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0032232)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_7G00195180
rosa_samantha Rh2BG445300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 28, 175
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 2 cut(s) 22, 132
AluI AGCT 2 cut(s) 22, 132
AoxI GGCC 2 cut(s) 28, 175
ApoI RAATTY 1 cut(s) 151
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 70
BalI TGGCCA 1 cut(s) 30
BceAI ACGGC 2 cut(s) 180, 190
BcnI CCSGG 1 cut(s) 67
BfaI CTAG 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 65
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 37, 147
BshFI GGCC 2 cut(s) 30, 177
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 1 cut(s) 202
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 2 cut(s) 30, 177
BspANI GGCC 2 cut(s) 30, 177
BspCNI CTCAG 2 cut(s) 36, 146
BssECI CCNNGG 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 23, 133
BstSCI CCNGG 1 cut(s) 65
BsuRI GGCC 2 cut(s) 30, 177
BtgZI GCGATG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 31
Csp6I GTAC 1 cut(s) 198
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviJI RGCY 5 cut(s) 22, 30, 132, 177, 195
CviKI_1 RGCY 5 cut(s) 22, 30, 132, 177, 195
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 2 cut(s) 23, 133
EaeI YGGCCR 2 cut(s) 28, 175
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
FaiI YATR 2 cut(s) 122, 210
FspBI CTAG 1 cut(s) 107
HaeIII GGCC 2 cut(s) 30, 177
HapII CCGG 1 cut(s) 67
HpaII CCGG 1 cut(s) 67
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 1 cut(s) 112
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 91, 111
HpyCH4V TGCA 1 cut(s) 42
HpyF3I CTNAG 2 cut(s) 23, 133
LpnPI CCDG 2 cut(s) 80, 153
MaeI CTAG 1 cut(s) 107
MboII GAAGA 4 cut(s) 53, 79, 160, 177
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 1 cut(s) 151
MluNI TGGCCA 1 cut(s) 30
MnlI CCTC 3 cut(s) 63, 67, 104
Mox20I TGGCCA 1 cut(s) 30
MscI TGGCCA 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 30
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 67
Mva1269I GAATGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 44
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 67
SetI ASST 5 cut(s) 24, 50, 83, 96, 134
SgeI CNNG 9 cut(s) 31, 44, 61, 78, 79, 119, 137, 152, 174
Sse9I AATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 65
TasI AATT 1 cut(s) 151
TscAI CASTG 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 73, 109
TspRI CASTG 1 cut(s) 31
XapI RAATTY 1 cut(s) 151
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.