Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010194

Physical Location & Seq

Genomic Coordinates Reverse (-)

33254542 .. 33256377

Gene Structure 1836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0230500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGGTGGAGGAGGGCGGCGCCGCCGATGAAGACGATGAGCCAAACAGAGCCGAGCATGTGCTGGGAGCGAAAGAAGAAGTAGTAGTAGTACCAAATAAAGGTAAAGCCGAAGCCGAGCCAAACAGAGGAGAGCTAGTAGTGCCAGAAGTGGAGGCAGATGCAGTTGACCCGAATAAGGATGGGGTAGAACCTGGAGCCAGCGTCGATGAGGATGAGCCAAACAGGGATTGGGGTGTGGTTGAGCCGAACATAGGCTGCGACGGAATGGAGCCTGAACCGGCGGTGGAGGGATTGAATCCGAATAAAGGGGTAGAAGCTGCGGTGGTGGTGGTTGTTGAGGCGGTGGAGGATCCAACTCCGAATGAGGGAAACGGGTTCGGGTTCGGGGTACCGAAAGCGGGGGAGGAGGAGGTGGAAAGGTTTGAGGGAACGGAGCCGAAAGGGGAGGATTCGAGTCCGAACCCGGTGGAGGTGGTGGTGGGCGCGGAGGATCCGAAGAGGGAAGGGGAAGAGGCGAATGAGAAAGCAGGGGTGGAGGATCCGAAAGGGGAAGTGGATTGTGAAGCGAAGGACCCGGTGGAGGTGGTGGCGGGCGCGGAGGATCCGAAGAGGGAAGGGGTGGAGGATCCGAAAAGGGAAGTGGATTGTGAAGCGGAGGATCCGAGTCCGAACCAGGTGGAGGTGGTGGAGGGGGCGGAGGATCCGGAGAGGGAAGGGGAGGAGGCGAATGAGAAAGCTGGGGTGGAGGATCCAAAAGGGGAAGTGGACTGTGAAGCGGAGGATCTGAGTCCGAACCCGATGGAGGTGGTGGCGGGCACGGAGGATCCGAAGAGGGATGGGGAGGAGGCGAATGAGAAAGCAGGGGTGGAGGATCCGAAAAGGGTAGTGGATTGTGAAGCGGAGGATCTGAGTCCGAACTCGGTGGTGGTGGTGGCGGGCGTGGAGGATCCAAAGAGGGAAGGGGAGGAGGCGAATGAGAAAGCAGGGGTGGAGGATCCGAAAGGGGAAGTGGATTGTGAAGCGGAGGATCCGAGTCCGAACCCGGTGGAGGTGGTGGCGGGCGCGGAGGATCCGAAGAGGGAAGGGGAGGAGGCGAATGAGAAAGCAGGGGTGGAGGATCCGAAAGGGGAAGTGGATTGTGAAGCGGAGGATCCGAGTCCGAACCCGGTGGAGGTGGTGGCCGGCGCGGAGGATCCGAAGAGGGAAGGGGAGGAGGCGAATGAGAAAGCAGGGGTGGAGGATCCGAAAGGGGAAGTGGATTGTGAAGCGGAGGATCCGAGTCCGAACCCGGTGGAGGTGGTGGCCGGCGCGGAGGATCCGAAGAGGGAAGGGGAGGAAGTGAATGAGAAAGCAGGGGTGGAGGATCCGAAAAGGGTAGTGGATTGTGAAGCGGAGGATCCGAGTCCGAACCCGGTGGAGGTGGTGGCGGGCGGGGAGGATCCGAAGAGGGAAGGGGAGGAGGCGAATGAGAAAGCAGGGGTGGAGGATCCAAAAGGGGAAGTGGATTGTGAAGCGGAGGATCCGAGTCCGAACCCGGTGGAGGTGGTGGCGGGGGCGAAGGATCCGAAAAGGGAAGGGGAGGAGGCGAATGAGAAAGCAGGGGTGGAGGATCCGAAAGGGGAAGTGGATTGTGAAGCGGAGGATCTGAGTCCGAACCCGGTGGAGGTGGTGGCGGGCGCGGAGGATCCGAAGAGGGAAGGGGAGGAGGCGAATGAGAAAGCAGGGGTGGAGGATTCGAAAGGGGAAGTGGATTGTGAAGAGGAGGATCCGAAATTGAAACCCGACATTGCTCCTTCTCTGCTCTCTCGCTCAGTCTCTGCAATTTCCCAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009664 GO:0009987 GO:0010393 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016740 GO:0016741 GO:0017144 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0052546 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

611

Amino Acids

64.26

Weight (kDa)

4.05

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00740 AT4G00740
fragaria_vesca	FvH4_7g13340 FvH4_7g13340 FvH4_7g13340 FvH4_7g13340 FvH4_7g13340
malus_domestica	MD01G1050300.v1.1 MD07G1127700.v1.1
prunus_persica	Prupe.2G156800_v2.0.a1
pyrus_communis	pycom01g07520 pycom07g12290
rosa_chinensis	RchiOBHm_Chr1g0352661
rosa_laevigata	RLG00000028323
rosa_multiflora	Rmu_sc0005118.1_g000004
rosa_roxburghii	Rroxscaffold_4G00302510
rosa_rugosa	Rorug01G0230500
rosa_samantha	Rh1AG243800 Rh1BG214400 Rh1CG227800 Rh1DG240500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	388
AccB1I	GGYRCC	2 cut(s)	17, 388
AccII	CGCG	6 cut(s)	485, 596, 1064, 1187, 1310, 1679
AccIII	TCCGGA	1 cut(s)	703
AcoI	YGGCCR	2 cut(s)	1179, 1302
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	2 cut(s)	90, 390
AgsI	TTSAA	2 cut(s)	295, 1777
AjnI	CCWGG	2 cut(s)	190, 672
AluBI	AGCT	3 cut(s)	133, 317, 737
AluI	AGCT	3 cut(s)	133, 317, 737
Alw26I	GTCTC	1 cut(s)	1819
AlwNI	CAGNNNCTG	1 cut(s)	1817
Aor13HI	TCCGGA	1 cut(s)	703
AoxI	GGCC	2 cut(s)	1179, 1302
ApeKI	GCWGC	2 cut(s)	255, 317
Asp718I	GGTACC	1 cut(s)	388
AspLEI	GCGC	7 cut(s)	20, 485, 596, 1064, 1187, 1310, 1679
AspS9I	GGNCC	1 cut(s)	571
AsuC2I	CCSGG	8 cut(s)	464, 575, 1043, 1166, 1289, 1412, 1535, 1658
AsuII	TTCGAA	1 cut(s)	1736
AvaII	GGWCC	1 cut(s)	571
BaeGI	GKGCMC	1 cut(s)	818
BanI	GGYRCC	2 cut(s)	17, 388
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	242, 304
BccI	CCATC	3 cut(s)	173, 793, 830
BciT130I	CCWGG	2 cut(s)	192, 674
BcnI	CCSGG	8 cut(s)	464, 575, 1043, 1166, 1289, 1412, 1535, 1658
BcoDI	GTCTC	1 cut(s)	1819
BfaI	CTAG	1 cut(s)	134
BfoI	RGCGCY	1 cut(s)	21
BisI	GCNGC	4 cut(s)	16, 21, 256, 318
BlsI	GCNGC	4 cut(s)	17, 22, 257, 319
Bme18I	GGWCC	1 cut(s)	571
BmgT120I	GGNCC	1 cut(s)	571
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	1736
BpuMI	CCSGG	8 cut(s)	464, 575, 1043, 1166, 1289, 1412, 1535, 1658
BsaHI	GRCGYC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	1828
BsaWI	WCCGGW	1 cut(s)	703
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 186, 216
Bse118I	RCCGGY	3 cut(s)	277, 1181, 1304
Bse3DI	GCAATG	1 cut(s)	1785
BseAI	TCCGGA	1 cut(s)	703
BseBI	CCWGG	2 cut(s)	192, 674
BseDI	CCNNGG	1 cut(s)	1828
BseGI	GGATG	3 cut(s)	184, 217, 841
BseMI	GCAATG	1 cut(s)	1785
BseMII	CTCAG	4 cut(s)	776, 899, 1637, 1824
BseSI	GKGCMC	1 cut(s)	818
BseXI	GCAGC	2 cut(s)	242, 304
BseYI	CCCAGC	2 cut(s)	61, 737
Bsh1236I	CGCG	6 cut(s)	485, 596, 1064, 1187, 1310, 1679
BshFI	GGCC	2 cut(s)	1181, 1304
BshNI	GGYRCC	2 cut(s)	17, 388
BsmAI	GTCTC	1 cut(s)	1819
BsnI	GGCC	2 cut(s)	1181, 1304
Bsp119I	TTCGAA	1 cut(s)	1736
Bsp1286I	GDGCHC	1 cut(s)	818
Bsp13I	TCCGGA	1 cut(s)	703
BspANI	GGCC	2 cut(s)	1181, 1304
BspCNI	CTCAG	4 cut(s)	777, 900, 1638, 1823
BspEI	TCCGGA	1 cut(s)	703
BspFNI	CGCG	6 cut(s)	485, 596, 1064, 1187, 1310, 1679
BspT104I	TTCGAA	1 cut(s)	1736
BspT107I	GGYRCC	2 cut(s)	17, 388
BsrDI	GCAATG	1 cut(s)	1785
BsrFI	RCCGGY	3 cut(s)	277, 1181, 1304
BssAI	RCCGGY	3 cut(s)	277, 1181, 1304
BssECI	CCNNGG	1 cut(s)	1828
BssNI	GRCGYC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	1828
Bst2UI	CCWGG	2 cut(s)	192, 674
Bst4CI	ACNGT	1 cut(s)	770
BstACI	GRCGYC	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	1736
BstC8I	GCNNGC	9 cut(s)	199, 592, 814, 937, 1060, 1183, 1306, 1429, 1675
BstDEI	CTNAG	4 cut(s)	785, 908, 1646, 1810
BstF5I	GGATG	3 cut(s)	184, 217, 841
BstFNI	CGCG	6 cut(s)	485, 596, 1064, 1187, 1310, 1679
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	7 cut(s)	20, 485, 596, 1064, 1187, 1310, 1679
BstMAI	GTCTC	1 cut(s)	1819
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	2 cut(s)	192, 674
BstNSI	RCATGY	1 cut(s)	59
BstSLI	GKGCMC	1 cut(s)	818
BstUI	CGCG	6 cut(s)	485, 596, 1064, 1187, 1310, 1679
BstV1I	GCAGC	2 cut(s)	242, 304
BstV2I	GAAGAC	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	1181, 1304
BtsCI	GGATG	3 cut(s)	184, 217, 841
Cac8I	GCNNGC	9 cut(s)	199, 592, 814, 937, 1060, 1183, 1306, 1429, 1675
CaiI	CAGNNNCTG	1 cut(s)	1817
CfoI	GCGC	7 cut(s)	20, 485, 596, 1064, 1187, 1310, 1679
Cfr10I	RCCGGY	3 cut(s)	277, 1181, 1304
Cfr13I	GGNCC	1 cut(s)	571
CseI	GACGC	1 cut(s)	190
CsiI	ACCWGGT	1 cut(s)	672
Csp6I	GTAC	2 cut(s)	89, 389
CviAII	CATG	1 cut(s)	56
CviQI	GTAC	2 cut(s)	89, 389
DdeI	CTNAG	4 cut(s)	785, 908, 1646, 1810
DinI	GGCGCC	1 cut(s)	19
EaeI	YGGCCR	2 cut(s)	1179, 1302
EciI	GGCGGA	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	1828
Eco47I	GGWCC	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	571
EcoRII	CCWGG	2 cut(s)	190, 672
EcoT14I	CCWWGG	1 cut(s)	1828
EgeI	GGCGCC	1 cut(s)	19
EheI	GGCGCC	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	1828
FaeI	CATG	1 cut(s)	59
FaiI	YATR	2 cut(s)	57, 251
FatI	CATG	1 cut(s)	55
FauI	CCCGC	9 cut(s)	391, 583, 805, 928, 1051, 1420, 1424, 1543, 1666
Fnu4HI	GCNGC	4 cut(s)	16, 21, 256, 318
FokI	GGATG	3 cut(s)	191, 224, 848
Fsp4HI	GCNGC	4 cut(s)	16, 21, 256, 318
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	7 cut(s)	19, 484, 595, 1063, 1186, 1309, 1678
GluI	GCNGC	4 cut(s)	16, 21, 256, 318
GsaI	CCCAGC	2 cut(s)	65, 741
GsuI	CTGGAG	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	2 cut(s)	1181, 1304
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	7 cut(s)	20, 485, 596, 1064, 1187, 1310, 1679
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	1 cut(s)	59
Hin6I	GCGC	7 cut(s)	18, 483, 594, 1062, 1185, 1308, 1677
HinP1I	GCGC	7 cut(s)	18, 483, 594, 1062, 1185, 1308, 1677
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	166, 766
Hpy188III	TCNNGA	1 cut(s)	704
Hpy8I	GTNNAC	2 cut(s)	166, 766
Hpy99I	CGWCG	2 cut(s)	206, 263
HpyCH4III	ACNGT	1 cut(s)	770
HpyCH4V	TGCA	2 cut(s)	161, 1820
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	4 cut(s)	785, 908, 1646, 1810
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	59
HspAI	GCGC	7 cut(s)	18, 483, 594, 1062, 1185, 1308, 1677
KasI	GGCGCC	1 cut(s)	17
Kpn2I	TCCGGA	1 cut(s)	703
KpnI	GGTACC	1 cut(s)	392
KroI	GCCGGC	2 cut(s)	1181, 1304
KroNI	GCCGGC	2 cut(s)	1183, 1306
LmnI	GCTCC	5 cut(s)	65, 194, 268, 433, 1795
Lsp1109I	GCAGC	2 cut(s)	242, 304
LweI	GCATC	1 cut(s)	148
MabI	ACCWGGT	1 cut(s)	672
MaeI	CTAG	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	818
MluCI	AATT	2 cut(s)	1772, 1821
Mly113I	GGCGCC	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	377
MroI	TCCGGA	1 cut(s)	703
MroNI	GCCGGC	2 cut(s)	1181, 1304
MvaI	CCWGG	2 cut(s)	192, 674
MvnI	CGCG	6 cut(s)	485, 596, 1064, 1187, 1310, 1679
MwoI	GCNNNNNNNGC	1 cut(s)	139
NaeI	GCCGGC	2 cut(s)	1183, 1306
NarI	GGCGCC	1 cut(s)	18
NciI	CCSGG	8 cut(s)	464, 575, 1043, 1166, 1289, 1412, 1535, 1658
NgoMIV	GCCGGC	2 cut(s)	1181, 1304
NlaIII	CATG	1 cut(s)	59
NmeAIII	GCCGAG	2 cut(s)	76, 139
NspI	RCATGY	1 cut(s)	59
NspV	TTCGAA	1 cut(s)	1736
PcsI	WCGNNNNNNNCGW	1 cut(s)	824
PdiI	GCCGGC	2 cut(s)	1183, 1306
PfeI	GAWTC	3 cut(s)	295, 449, 1733
PkrI	GCNGC	4 cut(s)	17, 22, 257, 319
PluTI	GGCGCC	1 cut(s)	21
PpuMI	RGGWCCY	1 cut(s)	571
Psp5II	RGGWCCY	1 cut(s)	571
Psp6I	CCWGG	2 cut(s)	190, 672
PspFI	CCCAGC	2 cut(s)	61, 737
PspGI	CCWGG	2 cut(s)	190, 672
PspPI	GGNCC	1 cut(s)	571
PspPPI	RGGWCCY	1 cut(s)	571
PstNI	CAGNNNCTG	1 cut(s)	1817
RsaI	GTAC	2 cut(s)	90, 390
RsaNI	GTAC	2 cut(s)	89, 389
SatI	GCNGC	4 cut(s)	16, 21, 256, 318
Sau96I	GGNCC	1 cut(s)	571
SduI	GDGCHC	1 cut(s)	818
SexAI	ACCWGGT	1 cut(s)	672
SfaNI	GCATC	1 cut(s)	148
SfoI	GGCGCC	1 cut(s)	19
SfuI	TTCGAA	1 cut(s)	1736
SinI	GGWCC	1 cut(s)	571
Sse9I	AATT	2 cut(s)	1772, 1821
SspDI	GGCGCC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	1828
TaaI	ACNGT	1 cut(s)	770
TaqI	TCGA	3 cut(s)	204, 452, 1736
TasI	AATT	2 cut(s)	1772, 1821
TauI	GCSGC	2 cut(s)	18, 23
TfiI	GAWTC	3 cut(s)	295, 449, 1733
TseI	GCWGC	2 cut(s)	255, 317
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	3 cut(s)	276, 446, 833
VpaK11BI	GGWCC	1 cut(s)	571
XceI	RCATGY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.