Rorug01G0261100

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012385
Physical Location & Seq
Forward (+)
37056477 .. 37058149
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0261100.1

Sequence Viewer

Length: 954 bp
ATGGCAATTATCATCATCACAGCTACCATGATTGAGCTGCAGCTATGGTCTTCTCCTCATACCAACTCATCATCAGTTTCAGTACCACCATCTCCACCAAAGCTTCCTGTGATCGGAAACCTCCACCGGCTAGGGTTACTCCCTCACCGCTCTCTTCAAACTCTAGCGCAACGCCATGGGCCTGATCTAATGCTACTCCATCTCGGAAGCAGGCCTGTGCTTGTTGTCTCAACAGCTGAGGCTGCCTCCGAGATCTTCAAAACCCATGACATTGCATTCTCGGACAGACCCAAGTTTGTCTTCTTTCAGAAGGTTCTCTACAATTACAAGGACATAATATCGGCACCTTATGGTGAGTATTGGAGGCAGATGAGAAGTGTCTGTGTCTTAAATCTTTTGAGCAACAAAAGGGTTCGTTCTTTTCGCACCGTGAGACTAGAGGAAACGATACTCATGATGAGCAACAAAGAACAGTCTTGTAGGGAGACATCTTCCTCCTCCTCATCAACATCGTCGGTTTTAAATTTAAGCGATATATTTATGAAGCTTACTAATGTTGTCATTTGTAGAGTTGCTATGGGTAGGAAGTACAGTGATCTCGGGGAAGAGCTGACAGAGTTCTTCACAAGGGTCAATATTGGTGACTATATCCCATGGCTTGCTTGGTTCACCCGTATGAATGGTTTCGACGCAAAACTAGATGATCTGGCTAAACGGATGGATGCCTTCCTTGATATGGTTATTCAAGAGCATATGGATAAATCAAAAAATTTAAATGATGATGATAATGAGAACGAAAAGGATTTGGTGGATGTTTTGCTTTGGGTTCAAAAAGAAAATGCAGTTGATTTTCCTATTGATCGTGTTAGCATGCAATCTCTCTCATCATCCTGGTGTCTAATTAGAGACAAGCTAGAGTACCCCCACGAACAATTTAATTTGATGGTAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_trans_1_4 Glycos_transf_1

Protein Analysis

317

Amino Acids

36.37

Weight (kDa)

6.26

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 29 - 290 1.7e-24 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012385)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01210
fragaria_vesca FvH4_7g15660 FvH4_7g15660
malus_domestica MD01G1073400.v1.1
prunus_persica Prupe.2G179800_v2.0.a1 Prupe.2G179800_v2.0.a1 Prupe.2G179800_v2.0.a1
pyrus_communis pycom01g10250 pycom07g12650
rosa_chinensis RchiOBHm_Chr1g0358361
rosa_laevigata RLG00000027967
rosa_multiflora Rmu_sc0002144.1_g000017
rosa_roxburghii Rroxscaffold_4G00298130
rosa_rugosa Rorug01G0261100
rosa_samantha Rh1AG275100 Rh1BG242000 Rh1CG258000 Rh1DG270800
rosa_wichuraiana Rw1G024520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 343
AccBSI CCGCTC 1 cut(s) 150
AciI CCGC 1 cut(s) 148
AcsI RAATTY 2 cut(s) 523, 769
AfaI GTAC 3 cut(s) 84, 590, 920
AfiI CCNNNNNNNGG 2 cut(s) 113, 736
AgsI TTSAA 4 cut(s) 158, 259, 746, 830
AjnI CCWGG 1 cut(s) 890
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 8 cut(s) 23, 37, 43, 103, 236, 547, 610, 913
AluI AGCT 8 cut(s) 23, 37, 43, 103, 236, 547, 610, 913
Alw26I GTCTC 4 cut(s) 232, 427, 479, 900
Ama87I CYCGRG 1 cut(s) 599
AoxI GGCC 2 cut(s) 179, 212
ApeKI GCWGC 3 cut(s) 37, 40, 242
ApoI RAATTY 2 cut(s) 523, 769
Asp700I GAANNNNTTC 1 cut(s) 683
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 4 cut(s) 137, 365, 653, 661
AvaI CYCGRG 1 cut(s) 599
BanI GGYRCC 1 cut(s) 343
BarI GAAGNNNNNNTAC 2 cut(s) 302, 334
BbsI GAAGAC 2 cut(s) 42, 292
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 24, 52, 229
BccI CCATC 4 cut(s) 97, 207, 712, 937
BciT130I CCWGG 1 cut(s) 892
BcoDI GTCTC 4 cut(s) 232, 427, 479, 900
BfaI CTAG 5 cut(s) 131, 164, 437, 698, 914
BfmI CTRYAG 1 cut(s) 38
BglII AGATCT 1 cut(s) 252
BisI GCNGC 3 cut(s) 38, 41, 243
BlsI GCNGC 3 cut(s) 39, 42, 244
Bme1390I CCNGG 1 cut(s) 892
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 892
BmsI GCATC 1 cut(s) 712
BpiI GAAGAC 2 cut(s) 42, 292
BplI GAGNNNNNCTC 2 cut(s) 230, 262
Bpu10I CCTNAGC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 175, 653
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 736
Bse118I RCCGGY 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 892
BseDI CCNNGG 2 cut(s) 175, 653
BseGI GGATG 4 cut(s) 723, 727, 817, 887
BseLI CCNNNNNNNGG 2 cut(s) 113, 736
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 3 cut(s) 45, 487, 490
BseXI GCAGC 3 cut(s) 24, 52, 229
BshFI GGCC 2 cut(s) 181, 214
BshNI GGYRCC 1 cut(s) 343
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 113, 736
BsmAI GTCTC 4 cut(s) 232, 427, 479, 900
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 2 cut(s) 181, 214
BsoBI CYCGRG 1 cut(s) 599
Bsp143I GATC 6 cut(s) 111, 184, 252, 595, 703, 859
Bsp19I CCATGG 2 cut(s) 175, 653
BspACI CCGC 1 cut(s) 148
BspANI GGCC 2 cut(s) 181, 214
BspCNI CTCAG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 345
BspMAI CTGCAG 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 600
BspT107I GGYRCC 1 cut(s) 343
BsrBI CCGCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 126
BssAI RCCGGY 1 cut(s) 126
BssECI CCNNGG 2 cut(s) 175, 653
BssMI GATC 6 cut(s) 111, 184, 252, 595, 703, 859
BssT1I CCWWGG 2 cut(s) 175, 653
Bst2UI CCWGG 1 cut(s) 892
Bst4CI ACNGT 3 cut(s) 430, 474, 593
Bst6I CTCTTC 2 cut(s) 159, 600
BstC8I GCNNGC 3 cut(s) 212, 660, 872
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 2 cut(s) 175, 653
BstEII GGTNACC 1 cut(s) 946
BstF5I GGATG 4 cut(s) 723, 727, 817, 887
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 6 cut(s) 114, 187, 255, 598, 706, 862
BstMAI GTCTC 4 cut(s) 232, 427, 479, 900
BstMBI GATC 6 cut(s) 111, 184, 252, 595, 703, 859
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 892
BstNSI RCATGY 1 cut(s) 874
BstPI GGTNACC 1 cut(s) 946
BstSCI CCNGG 1 cut(s) 890
BstSFI CTRYAG 1 cut(s) 38
BstV1I GCAGC 3 cut(s) 24, 52, 229
BstV2I GAAGAC 2 cut(s) 42, 292
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BsuRI GGCC 2 cut(s) 181, 214
BtgI CCRYGG 2 cut(s) 175, 653
BtsCI GGATG 4 cut(s) 723, 727, 817, 887
BtsIMutI CAGTG 1 cut(s) 598
Cac8I GCNNGC 3 cut(s) 212, 660, 872
CciI TCATGA 1 cut(s) 453
CfoI GCGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 126
Cfr13I GGNCC 1 cut(s) 179
CseI GACGC 1 cut(s) 698
Csp6I GTAC 3 cut(s) 83, 589, 919
CviAII CATG 6 cut(s) 28, 176, 266, 454, 654, 871
CviQI GTAC 3 cut(s) 83, 589, 919
DdeI CTNAG 1 cut(s) 237
DpnI GATC 6 cut(s) 113, 186, 254, 597, 705, 861
DpnII GATC 6 cut(s) 111, 184, 252, 595, 703, 859
DraI TTTAAA 2 cut(s) 522, 774
Eam1104I CTCTTC 2 cut(s) 159, 600
EarI CTCTTC 2 cut(s) 159, 600
Eco130I CCWWGG 2 cut(s) 175, 653
Eco147I AGGCCT 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 599
Eco91I GGTNACC 1 cut(s) 946
EcoO65I GGTNACC 1 cut(s) 946
EcoRII CCWGG 1 cut(s) 890
EcoT14I CCWWGG 2 cut(s) 175, 653
ErhI CCWWGG 2 cut(s) 175, 653
FaeI CATG 6 cut(s) 31, 179, 269, 457, 657, 874
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FatI CATG 6 cut(s) 27, 175, 265, 453, 653, 870
FauNDI CATATG 1 cut(s) 753
Fnu4HI GCNGC 3 cut(s) 38, 41, 243
FokI GGATG 4 cut(s) 730, 734, 824, 874
Fsp4HI GCNGC 3 cut(s) 38, 41, 243
FspBI CTAG 5 cut(s) 131, 164, 437, 698, 914
GlaI GCGC 1 cut(s) 168
GluI GCNGC 3 cut(s) 38, 41, 243
HaeIII GGCC 2 cut(s) 181, 214
HapII CCGG 1 cut(s) 127
HgaI GACGC 1 cut(s) 698
HhaI GCGC 1 cut(s) 169
Hin1II CATG 6 cut(s) 31, 179, 269, 457, 657, 874
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HindIII AAGCTT 2 cut(s) 101, 545
HpaII CCGG 1 cut(s) 127
HphI GGTGA 4 cut(s) 137, 365, 653, 661
Hpy166II GTNNAC 1 cut(s) 669
Hpy188I TCNGA 5 cut(s) 116, 206, 250, 283, 309
Hpy188III TCNNGA 2 cut(s) 454, 746
Hpy8I GTNNAC 1 cut(s) 669
Hpy99I CGWCG 2 cut(s) 517, 692
HpyAV CCTTC 2 cut(s) 304, 736
HpyCH4III ACNGT 3 cut(s) 430, 474, 593
HpyCH4V TGCA 4 cut(s) 40, 275, 842, 874
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 6 cut(s) 31, 179, 269, 457, 657, 874
HspAI GCGC 1 cut(s) 167
Kzo9I GATC 6 cut(s) 111, 184, 252, 595, 703, 859
LguI GCTCTTC 1 cut(s) 600
LpnPI CCDG 8 cut(s) 120, 140, 195, 196, 228, 692, 877, 904
Lsp1109I GCAGC 3 cut(s) 24, 52, 229
LweI GCATC 1 cut(s) 712
MaeI CTAG 5 cut(s) 131, 164, 437, 698, 914
MaeIII GTNAC 3 cut(s) 135, 641, 946
MalI GATC 6 cut(s) 113, 186, 254, 597, 705, 861
MbiI CCGCTC 1 cut(s) 150
MboI GATC 6 cut(s) 111, 184, 252, 595, 703, 859
MboII GAAGA 7 cut(s) 42, 146, 247, 292, 483, 613, 617
MflI RGATCY 1 cut(s) 252
MluCI AATT 7 cut(s) 6, 322, 523, 769, 900, 932, 937
MroXI GAANNNNTTC 1 cut(s) 683
MseI TTAA 5 cut(s) 389, 521, 527, 773, 936
MslI CAYNNNNRTG 2 cut(s) 674, 892
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 1 cut(s) 892
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 1 cut(s) 892
MwoI GCNNNNNNNGC 1 cut(s) 242
NcoI CCATGG 2 cut(s) 175, 653
NdeI CATATG 1 cut(s) 753
NdeII GATC 6 cut(s) 111, 184, 252, 595, 703, 859
NlaIII CATG 6 cut(s) 31, 179, 269, 457, 657, 874
NlaIV GGNNCC 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 641
NspI RCATGY 1 cut(s) 874
PaeI GCATGC 1 cut(s) 874
PagI TCATGA 1 cut(s) 453
PceI AGGCCT 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 600
PctI GAATGC 1 cut(s) 275
PdmI GAANNNNTTC 1 cut(s) 683
PkrI GCNGC 3 cut(s) 39, 42, 244
Psp6I CCWGG 1 cut(s) 890
PspEI GGTNACC 1 cut(s) 946
PspGI CCWGG 1 cut(s) 890
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 179
PstI CTGCAG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 3 cut(s) 84, 590, 920
RsaNI GTAC 3 cut(s) 83, 589, 919
RseI CAYNNNNRTG 2 cut(s) 674, 892
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 5 cut(s) 389, 521, 527, 773, 936
SatI GCNGC 3 cut(s) 38, 41, 243
Sau3AI GATC 6 cut(s) 111, 184, 252, 595, 703, 859
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 892
SfaNI GCATC 1 cut(s) 712
SfcI CTRYAG 1 cut(s) 38
SmiI ATTTAAAT 1 cut(s) 774
SmiMI CAYNNNNRTG 2 cut(s) 674, 892
SphI GCATGC 1 cut(s) 874
Sse9I AATT 7 cut(s) 6, 322, 523, 769, 900, 932, 937
SseBI AGGCCT 1 cut(s) 214
SsiI CCGC 1 cut(s) 148
SspI AATATT 1 cut(s) 637
SspMI CTAG 5 cut(s) 131, 164, 437, 698, 914
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 890
StyI CCWWGG 2 cut(s) 175, 653
SwaI ATTTAAAT 1 cut(s) 774
TaaI ACNGT 3 cut(s) 430, 474, 593
TaqI TCGA 1 cut(s) 687
TasI AATT 7 cut(s) 6, 322, 523, 769, 900, 932, 937
TatI WGTACW 1 cut(s) 588
Tru1I TTAA 5 cut(s) 389, 521, 527, 773, 936
Tru9I TTAA 5 cut(s) 389, 521, 527, 773, 936
TscAI CASTG 1 cut(s) 598
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 3 cut(s) 37, 40, 242
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 2 cut(s) 557, 692
TspGWI ACGGA 1 cut(s) 730
TspRI CASTG 1 cut(s) 598
XapI RAATTY 2 cut(s) 523, 769
XceI RCATGY 1 cut(s) 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 660
XmnI GAANNNNTTC 1 cut(s) 683
XspI CTAG 5 cut(s) 131, 164, 437, 698, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.