Rorug01G0295900

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015690
Physical Location & Seq
Forward (+)
41136219 .. 41136455
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0295900.1

Sequence Viewer

Length: 237 bp
ATGCCAAGGAAGAATTTCCCGCTTTTCGATGAGATTTGCCAGAACCCTCTGGCTCTTAAGGCTGAGATTCATGAGTGGACTGATGGGGAAGAGTTTGAGCACATTTTGTTGAACTTGATCAACACAATCGCCATTGAAGAGAATGATGCTGCTCGGTTCATTACAATGAATAACTTCAAGTTACAGACCATCTCTGTTTCTGGTCATGAGGCCTTCCCTAAAGCTCTCCCAGTTTAG

Protein Analysis

78

Amino Acids

8.94

Weight (kDa)

4.82

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Put_Phosphatase PF06888 1 - 40 1.8e-08 Putative Phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015690)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18410 FvH4_7g18410 FvH4_7g18410
malus_domestica MD01G1100700.v1.1
prunus_persica Prupe.2G206200_v2.0.a1 Prupe.2G206200_v2.0.a1
pyrus_communis pycom01g12760
rosa_chinensis RchiOBHm_Chr1g0362221
rosa_laevigata RLG00000027665
rosa_multiflora Rmu_sc0001237.1_g000011
rosa_roxburghii Rroxscaffold_4G00294420
rosa_rugosa Rorug01G0295900
rosa_samantha Rh1AG305200 Rh1BG268000 Rh1CG286200 Rh1DG298100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 13
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 3 cut(s) 112, 137, 178
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 102
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 13
Asp700I GAANNNNTTC 2 cut(s) 14, 173
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 77, 197
BclI TGATCA 1 cut(s) 117
BfrI CTTAAG 1 cut(s) 56
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 136
BmuI ACTGGG 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 102
BsnI GGCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 117
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 55
BspHI TCATGA 2 cut(s) 70, 205
BspTI CTTAAG 1 cut(s) 56
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 5
Bst6I CTCTTC 2 cut(s) 84, 132
BstAFI CTTAAG 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 63
BstKTI GATC 1 cut(s) 120
BstMBI GATC 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 212
CciI TCATGA 2 cut(s) 70, 205
CviAII CATG 2 cut(s) 71, 206
CviJI RGCY 4 cut(s) 53, 62, 212, 224
CviKI_1 RGCY 4 cut(s) 53, 62, 212, 224
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 119
DpnII GATC 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 84, 132
EarI CTCTTC 2 cut(s) 84, 132
Eco130I CCWWGG 1 cut(s) 5
Eco147I AGGCCT 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 2 cut(s) 74, 209
FaiI YATR 2 cut(s) 72, 207
FatI CATG 2 cut(s) 70, 205
FauI CCCGC 1 cut(s) 27
FbaI TGATCA 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 212
Hin1II CATG 2 cut(s) 74, 209
HinfI GANTC 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 71, 206
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 2 cut(s) 74, 209
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 1 cut(s) 117
LpnPI CCDG 3 cut(s) 35, 53, 186
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 180
MalI GATC 1 cut(s) 119
MboI GATC 1 cut(s) 117
MboII GAAGA 3 cut(s) 22, 101, 149
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 13
MnlI CCTC 2 cut(s) 57, 202
MroXI GAANNNNTTC 2 cut(s) 14, 173
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 164
MspCI CTTAAG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 1 cut(s) 117
NlaIII CATG 2 cut(s) 74, 209
PagI TCATGA 2 cut(s) 70, 205
PceI AGGCCT 1 cut(s) 212
PdmI GAANNNNTTC 2 cut(s) 14, 173
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 117
SduI GDGCHC 1 cut(s) 102
SetI ASST 1 cut(s) 226
SfaNI GCATC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 13
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 1 cut(s) 20
StuI AGGCCT 1 cut(s) 212
StyI CCWWGG 1 cut(s) 5
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 13
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 3 cut(s) 59, 148, 182
Vha464I CTTAAG 1 cut(s) 56
XapI RAATTY 1 cut(s) 13
XmnI GAANNNNTTC 2 cut(s) 14, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.