Rorug01G0301000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018911
Physical Location & Seq
Reverse (-)
41711943 .. 41713286
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0301000.1

Sequence Viewer

Length: 1080 bp
ATGGCATCCGATAATTCTAGCAACGACGACCTTATTCTCCAGCAGCTGAAGGCCTTTGACGAATCCAAAGCTGGTATAAAAGGACTCGTGGATGCCGGAATCACAAAAGTCCCACAGATTTGCATCATACCACCGAAGGATCGCGCCAGCCAGGAACCAAGTGCTGGAAATATCCCTGTCATTGACCTCAGTGACATTATTGTGAAGCGTGATGAGGTGGTTGAACAAGTCCGGCGGGCTGCAGGGACTGTAGGGTTCTTCCAGGTGGTGAACCACGGGATACTGAATGAGTTAATGGACGAAATGATAGAGGGGGTGCGTGGATTTCACTACCTACCAAAGGAGGAGAAGGCTGAGTACTATACTAGAGAACTCCTGAGGAATGTGAAGTACTTCAGCAGCTTCAATTTATATGAGTCAAGATATGCTTGTTGGAAGGACACCATGTTTTGTGAAATGGGGAATCTTGATCCTCAAGAACTGCCACTGGTTTTAAGGGATATAAGTTTACGGTACTATAACCAAGCTTACAAGTTAGCTATTACTTTGTTTGAACTGCTATCCGAGGCACTAGGGCTGAAATCTAACCACCTTGTAGAGTTGGGTGTTATCAAGGGGTGTCTTCTAGCCACTCACTTCTATCCACCATGTCCTGAGCCTGAACTGACCATTGGCAAAGTCGCCCACTCGGATGGTTGTTTTCTCACCATCCTCCTTCAAGACCAAATTGGTGGACTCCAGATTCTAAATGACGACAAATGGATTGACATTGCTCCTGTGGCTGGAGCTCTAATTATCAATGTCGGAGATTTCTTGCAGCTACTCTCTAATGACAGGTTCATAAGTGTCAAACACCGAGTGTTGGCCAAAAAGAAAGGTCCAAGAATATCTGTGGGATGCTTTTTCAGAGATATTTCACGGGAAAGTTTGGACAAAGTGTATGAACCAATCAAGGAGTTGACATCTGATGACAATCCTCCAATTTACCGAGGAACGAGTGTCAAAGACTATGTTGCAGGCTATTACAGGCAAGGACTCTTCAATGGCGCCTATAACGGACTAGAATATTTGAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

40.39

Weight (kDa)

5.41

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 58 - 153 1.4e-20 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 207 - 303 1.6e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018911)

Species Orthologous Gene IDs
prunus_persica Prupe.2G209700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0362761
rosa_laevigata RLG00000027624
rosa_roxburghii Rroxscaffold_4G00293810
rosa_rugosa Rorug01G0301000
rosa_samantha Rh1AG309700 Rh1BG273300 Rh1CG290400 Rh1DG303900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1046
AccB7I CCANNNNNTGG 1 cut(s) 164
AccII CGCG 1 cut(s) 144
AciI CCGC 1 cut(s) 235
AclWI GGATC 2 cut(s) 147, 464
AcoI YGGCCR 1 cut(s) 864
AcuI CTGAAG 2 cut(s) 68, 379
AcyI GRCGYC 1 cut(s) 1047
AdeI CACNNNGTG 1 cut(s) 859
AfaI GTAC 3 cut(s) 359, 392, 515
AfiI CCNNNNNNNGG 4 cut(s) 164, 340, 782, 862
AgsI TTSAA 6 cut(s) 224, 406, 554, 719, 1042, 1072
AjnI CCWGG 2 cut(s) 150, 261
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 8 cut(s) 46, 71, 402, 527, 539, 788, 820, 1075
AluI AGCT 8 cut(s) 46, 71, 402, 527, 539, 788, 820, 1075
Alw21I GWGCWC 1 cut(s) 790
AlwI GGATC 2 cut(s) 147, 464
AlwNI CAGNNNCTG 2 cut(s) 46, 248
AoxI GGCC 2 cut(s) 51, 864
ApeKI GCWGC 4 cut(s) 43, 239, 399, 817
Asp700I GAANNNNTTC 1 cut(s) 392
AspLEI GCGC 2 cut(s) 146, 1049
AspS9I GGNCC 1 cut(s) 878
AsuHPI GGTGA 2 cut(s) 280, 697
AvaII GGWCC 1 cut(s) 878
AxyI CCTNAGG 1 cut(s) 377
BalI TGGCCA 1 cut(s) 866
BanI GGYRCC 1 cut(s) 1046
BanII GRGCYC 1 cut(s) 790
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 1 cut(s) 790
BbvI GCAGC 4 cut(s) 55, 226, 411, 829
BccI CCATC 2 cut(s) 686, 716
BciT130I CCWGG 2 cut(s) 152, 263
BciVI GTATCC 1 cut(s) 273
BfaI CTAG 5 cut(s) 18, 366, 572, 626, 1061
BfmI CTRYAG 2 cut(s) 240, 249
BfoI RGCGCY 1 cut(s) 1050
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 4 cut(s) 44, 240, 400, 818
BlsI GCNGC 4 cut(s) 45, 241, 401, 819
BmcAI AGTACT 2 cut(s) 359, 392
Bme1390I CCNGG 2 cut(s) 152, 263
Bme18I GGWCC 1 cut(s) 878
BmgT120I GGNCC 1 cut(s) 878
BmiI GGNNCC 2 cut(s) 156, 1048
BmrFI CCNGG 2 cut(s) 152, 263
BmsI GCATC 4 cut(s) 14, 82, 132, 887
BpiI GAAGAC 1 cut(s) 614
BpmI CTGGAG 3 cut(s) 23, 722, 804
Bpu10I CCTNAGC 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 459
BsaBI GATNNNNATC 2 cut(s) 122, 972
BsaHI GRCGYC 1 cut(s) 1047
BsaJI CCNNGG 3 cut(s) 274, 564, 988
Bsc4I CCNNNNNNNGG 4 cut(s) 164, 340, 782, 862
Bse1I ACTGG 1 cut(s) 492
Bse21I CCTNAGG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 768
Bse8I GATNNNNATC 2 cut(s) 122, 972
BseBI CCWGG 2 cut(s) 152, 263
BseDI CCNNGG 3 cut(s) 274, 564, 988
BseGI GGATG 5 cut(s) 5, 97, 697, 708, 902
BseJI GATNNNNATC 2 cut(s) 122, 972
BseLI CCNNNNNNNGG 4 cut(s) 164, 340, 782, 862
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 4 cut(s) 202, 345, 368, 645
BseNI ACTGG 1 cut(s) 492
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 4 cut(s) 55, 226, 411, 829
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 53, 866
BshNI GGYRCC 1 cut(s) 1046
BsiHKAI GWGCWC 1 cut(s) 790
BsiSI CCGG 2 cut(s) 96, 232
BslFI GGGAC 2 cut(s) 95, 259
BslI CCNNNNNNNGG 4 cut(s) 164, 340, 782, 862
BsmFI GGGAC 2 cut(s) 95, 259
BsnI GGCC 2 cut(s) 53, 866
Bsp1286I GDGCHC 1 cut(s) 790
Bsp143I GATC 2 cut(s) 139, 469
BspACI CCGC 1 cut(s) 235
BspANI GGCC 2 cut(s) 53, 866
BspCNI CTCAG 4 cut(s) 201, 346, 369, 646
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 156, 1048
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 2 cut(s) 147, 464
BspT107I GGYRCC 1 cut(s) 1046
BsrDI GCAATG 1 cut(s) 768
BsrI ACTGG 1 cut(s) 492
BssECI CCNNGG 3 cut(s) 274, 564, 988
BssMI GATC 2 cut(s) 139, 469
BssNI GRCGYC 1 cut(s) 1047
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 152, 263
Bst4CI ACNGT 2 cut(s) 250, 513
Bst6I CTCTTC 1 cut(s) 1043
BstACI GRCGYC 1 cut(s) 1047
BstC8I GCNNGC 3 cut(s) 148, 237, 1018
BstDEI CTNAG 4 cut(s) 188, 354, 377, 654
BstDSI CCRYGG 1 cut(s) 274
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 5 cut(s) 5, 97, 697, 708, 902
BstFNI CGCG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 1050
BstHHI GCGC 2 cut(s) 146, 1049
BstKTI GATC 2 cut(s) 142, 472
BstMBI GATC 2 cut(s) 139, 469
BstMWI GCNNNNNNNGC 1 cut(s) 779
BstNI CCWGG 2 cut(s) 152, 263
BstSCI CCNGG 2 cut(s) 150, 261
BstSFI CTRYAG 2 cut(s) 240, 249
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 55, 226, 411, 829
BstV2I GAAGAC 1 cut(s) 614
BstXI CCANNNNNNTGG 2 cut(s) 692, 731
Bsu36I CCTNAGG 1 cut(s) 377
BsuI GTATCC 1 cut(s) 273
BsuRI GGCC 2 cut(s) 53, 866
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 5 cut(s) 5, 97, 697, 708, 902
BtsIMutI CAGTG 2 cut(s) 196, 485
Cac8I GCNNGC 3 cut(s) 148, 237, 1018
CaiI CAGNNNCTG 2 cut(s) 46, 248
CfoI GCGC 2 cut(s) 146, 1049
Cfr13I GGNCC 1 cut(s) 878
Csp6I GTAC 3 cut(s) 358, 391, 514
CviAII CATG 2 cut(s) 445, 648
CviQI GTAC 3 cut(s) 358, 391, 514
DdeI CTNAG 4 cut(s) 188, 354, 377, 654
DinI GGCGCC 1 cut(s) 1048
DpnI GATC 2 cut(s) 141, 471
DpnII GATC 2 cut(s) 139, 469
DraIII CACNNNGTG 1 cut(s) 859
EaeI YGGCCR 1 cut(s) 864
Eam1104I CTCTTC 1 cut(s) 1043
EarI CTCTTC 1 cut(s) 1043
Ecl136II GAGCTC 1 cut(s) 788
Eco147I AGGCCT 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 878
Eco53kI GAGCTC 1 cut(s) 788
Eco57I CTGAAG 2 cut(s) 68, 379
Eco81I CCTNAGG 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 788
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoRII CCWGG 2 cut(s) 150, 261
EcoT38I GRGCYC 1 cut(s) 790
EgeI GGCGCC 1 cut(s) 1048
EheI GGCGCC 1 cut(s) 1048
FaeI CATG 2 cut(s) 448, 651
FalI AAGNNNNNCTT 2 cut(s) 412, 444
FaqI GGGAC 2 cut(s) 95, 259
FatI CATG 2 cut(s) 444, 647
FauI CCCGC 1 cut(s) 228
Fnu4HI GCNGC 4 cut(s) 44, 240, 400, 818
FokI GGATG 4 cut(s) 104, 695, 704, 909
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 4 cut(s) 44, 240, 400, 818
FspBI CTAG 5 cut(s) 18, 366, 572, 626, 1061
GlaI GCGC 2 cut(s) 145, 1048
GluI GCNGC 4 cut(s) 44, 240, 400, 818
GsuI CTGGAG 3 cut(s) 23, 722, 804
HaeII RGCGCY 1 cut(s) 1050
HaeIII GGCC 2 cut(s) 53, 866
HapII CCGG 2 cut(s) 96, 232
HhaI GCGC 2 cut(s) 146, 1049
Hin1I GRCGYC 1 cut(s) 1047
Hin1II CATG 2 cut(s) 448, 651
Hin6I GCGC 2 cut(s) 144, 1047
HinP1I GCGC 2 cut(s) 144, 1047
HincII GTYRAC 1 cut(s) 960
HindII GTYRAC 1 cut(s) 960
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 8 cut(s) 62, 84, 99, 416, 463, 735, 742, 1035
HpaII CCGG 2 cut(s) 96, 232
HphI GGTGA 2 cut(s) 280, 697
Hpy166II GTNNAC 4 cut(s) 271, 509, 734, 960
Hpy188I TCNGA 6 cut(s) 10, 565, 691, 806, 908, 967
Hpy188III TCNNGA 7 cut(s) 376, 420, 467, 476, 653, 719, 739
Hpy8I GTNNAC 4 cut(s) 271, 509, 734, 960
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 5 cut(s) 43, 130, 343, 430, 725
HpyCH4III ACNGT 2 cut(s) 250, 513
HpyCH4V TGCA 4 cut(s) 123, 242, 817, 1016
HpyF10VI GCNNNNNNNGC 1 cut(s) 779
HpyF3I CTNAG 4 cut(s) 188, 354, 377, 654
Hsp92I GRCGYC 1 cut(s) 1047
Hsp92II CATG 2 cut(s) 448, 651
HspAI GCGC 2 cut(s) 144, 1047
KasI GGCGCC 1 cut(s) 1046
Kzo9I GATC 2 cut(s) 139, 469
LmnI GCTCC 2 cut(s) 778, 785
Lsp1109I GCAGC 4 cut(s) 55, 226, 411, 829
LweI GCATC 4 cut(s) 14, 82, 132, 887
MaeI CTAG 5 cut(s) 18, 366, 572, 626, 1061
MaeIII GTNAC 1 cut(s) 191
MalI GATC 2 cut(s) 141, 471
MboI GATC 2 cut(s) 139, 469
MboII GAAGA 3 cut(s) 250, 614, 1030
MhlI GDGCHC 1 cut(s) 790
MlsI TGGCCA 1 cut(s) 866
MluCI AATT 5 cut(s) 13, 406, 726, 792, 981
MluNI TGGCCA 1 cut(s) 866
Mly113I GGCGCC 1 cut(s) 1047
MlyI GAGTC 4 cut(s) 78, 425, 729, 1029
MmeI TCCRAC 2 cut(s) 413, 784
Mox20I TGGCCA 1 cut(s) 866
MroXI GAANNNNTTC 1 cut(s) 392
MscI TGGCCA 1 cut(s) 866
MseI TTAA 2 cut(s) 293, 494
MslI CAYNNNNRTG 2 cut(s) 200, 690
Msp20I TGGCCA 1 cut(s) 866
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 2 cut(s) 96, 232
MspR9I CCNGG 2 cut(s) 152, 263
MvaI CCWGG 2 cut(s) 152, 263
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 779
NarI GGCGCC 1 cut(s) 1047
NdeII GATC 2 cut(s) 139, 469
NlaIII CATG 2 cut(s) 448, 651
NlaIV GGNNCC 2 cut(s) 156, 1048
NmuCI GTSAC 1 cut(s) 191
PceI AGGCCT 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 4 cut(s) 62, 99, 463, 742
PflMI CCANNNNNTGG 1 cut(s) 164
PkrI GCNGC 4 cut(s) 45, 241, 401, 819
PleI GAGTC 4 cut(s) 78, 424, 729, 1029
PluTI GGCGCC 1 cut(s) 1050
PpsI GAGTC 4 cut(s) 78, 424, 729, 1029
Psp124BI GAGCTC 1 cut(s) 790
Psp6I CCWGG 2 cut(s) 150, 261
PspGI CCWGG 2 cut(s) 150, 261
PspN4I GGNNCC 2 cut(s) 156, 1048
PspPI GGNCC 1 cut(s) 878
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 2 cut(s) 46, 248
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 3 cut(s) 359, 392, 515
RsaNI GTAC 3 cut(s) 358, 391, 514
RseI CAYNNNNRTG 2 cut(s) 200, 690
SacI GAGCTC 1 cut(s) 790
SaqAI TTAA 2 cut(s) 293, 494
SatI GCNGC 4 cut(s) 44, 240, 400, 818
Sau3AI GATC 2 cut(s) 139, 469
Sau96I GGNCC 1 cut(s) 878
ScaI AGTACT 2 cut(s) 359, 392
SchI GAGTC 4 cut(s) 78, 425, 729, 1029
ScrFI CCNGG 2 cut(s) 152, 263
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 4 cut(s) 14, 82, 132, 887
SfcI CTRYAG 2 cut(s) 240, 249
SfoI GGCGCC 1 cut(s) 1048
SinI GGWCC 1 cut(s) 878
SmiMI CAYNNNNRTG 2 cut(s) 200, 690
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
Sse9I AATT 5 cut(s) 13, 406, 726, 792, 981
SseBI AGGCCT 1 cut(s) 53
SsiI CCGC 1 cut(s) 235
SspDI GGCGCC 1 cut(s) 1046
SspI AATATT 1 cut(s) 1067
SspMI CTAG 5 cut(s) 18, 366, 572, 626, 1061
SstI GAGCTC 1 cut(s) 790
StuI AGGCCT 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 150, 261
TaaI ACNGT 2 cut(s) 250, 513
TasI AATT 5 cut(s) 13, 406, 726, 792, 981
TatI WGTACW 2 cut(s) 357, 390
TfiI GAWTC 4 cut(s) 62, 99, 463, 742
Tru1I TTAA 2 cut(s) 293, 494
Tru9I TTAA 2 cut(s) 293, 494
TscAI CASTG 2 cut(s) 196, 492
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 4 cut(s) 43, 239, 399, 817
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 829, 957
TspGWI ACGGA 1 cut(s) 1071
TspRI CASTG 2 cut(s) 196, 492
Van91I CCANNNNNTGG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 878
XagI CCTNNNNNAGG 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 5 cut(s) 18, 366, 572, 626, 1061
ZrmI AGTACT 2 cut(s) 359, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.