Rh1AG309700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018911
Physical Location & Seq
Reverse (-)
54361274 .. 54362010
737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG309700.1

Sequence Viewer

Length: 336 bp
ATGCTCTTCTGGAGTAGTACTACTTCTTACCCGATGGCCCTGCTCTACATCTTGTTGATTCTCTTGGCTCCTCCTCTCACCCAAGTGAGCTCTGAAGCTAGAGTTATCGCTTCCATGAGGTCAGTGGATCAATCATATAATTCAAACCCCTCGACTTACGTATCCCTTCGACCCAATAAGGGCCGTGTTCCTAAAGTGTTTGGAAACCCCAATATCGTGGAGGGTTGCTTGCCAAAAGGATTTCGTCGCTCTTCTGCACCTAGCCACTATGTGAATGATCACCCTCTTGACTCAGCACTGTGTTCTTCTTCAAGCAAGGGCATGAACAATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.13

Weight (kDa)

9.56

Isoelectric Point (pI)

64.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018911)

Species Orthologous Gene IDs
prunus_persica Prupe.2G209700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0362761
rosa_laevigata RLG00000027624
rosa_roxburghii Rroxscaffold_4G00293810
rosa_rugosa Rorug01G0301000
rosa_samantha Rh1AG309700 Rh1BG273300 Rh1CG290400 Rh1DG303900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 114
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 2 cut(s) 144, 312
AleI CACNNNNGTG 1 cut(s) 83
AluBI AGCT 2 cut(s) 90, 98
AluI AGCT 2 cut(s) 90, 98
Alw21I GWGCWC 1 cut(s) 92
AlwI GGATC 1 cut(s) 135
AoxI GGCC 2 cut(s) 36, 181
AspS9I GGNCC 2 cut(s) 37, 181
AsuHPI GGTGA 2 cut(s) 70, 272
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BanII GRGCYC 1 cut(s) 92
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
Bbv12I GWGCWC 1 cut(s) 92
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 168
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciVI GTATCC 1 cut(s) 172
BclI TGATCA 1 cut(s) 277
BfaI CTAG 2 cut(s) 99, 261
BfuI GTATCC 1 cut(s) 172
BmcAI AGTACT 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 37, 181
BmiI GGNNCC 1 cut(s) 69
BpmI CTGGAG 1 cut(s) 31
BsaAI YACGTR 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 306
BseRI GAGGAG 2 cut(s) 60, 63
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 2 cut(s) 38, 183
BsiHKAI GWGCWC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 179
BsnI GGCC 2 cut(s) 38, 183
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 2 cut(s) 127, 277
BspANI GGCC 2 cut(s) 38, 183
BspCNI CTCAG 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 1 cut(s) 135
BspQI GCTCTTC 2 cut(s) 11, 256
BssMI GATC 2 cut(s) 127, 277
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 2 cut(s) 11, 256
BstBAI YACGTR 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 1 cut(s) 292
BstKTI GATC 2 cut(s) 130, 280
BstMBI GATC 2 cut(s) 127, 277
BstSNI TACGTA 1 cut(s) 160
BstXI CCANNNNNNTGG 1 cut(s) 217
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 2 cut(s) 38, 183
BtsIMutI CAGTG 2 cut(s) 129, 296
Cac8I GCNNGC 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 37, 181
Csp6I GTAC 1 cut(s) 18
CviAII CATG 3 cut(s) 115, 322, 333
CviJI RGCY 6 cut(s) 38, 68, 90, 98, 183, 264
CviKI_1 RGCY 6 cut(s) 38, 68, 90, 98, 183, 264
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 1 cut(s) 292
DpnI GATC 2 cut(s) 129, 279
DpnII GATC 2 cut(s) 127, 277
DraIII CACNNNGTG 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 11, 256
EarI CTCTTC 2 cut(s) 11, 256
Ecl136II GAGCTC 1 cut(s) 90
Eco105I TACGTA 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 92
FaeI CATG 3 cut(s) 118, 325, 336
FaiI YATR 6 cut(s) 116, 136, 138, 270, 323, 334
FatI CATG 3 cut(s) 114, 321, 332
FbaI TGATCA 1 cut(s) 277
FriOI GRGCYC 1 cut(s) 92
FspBI CTAG 2 cut(s) 99, 261
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 2 cut(s) 38, 183
Hin1II CATG 3 cut(s) 118, 325, 336
HinfI GANTC 2 cut(s) 58, 290
HphI GGTGA 2 cut(s) 70, 272
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 10, 287
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 3 cut(s) 118, 325, 336
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 2 cut(s) 127, 277
LguI GCTCTTC 2 cut(s) 11, 256
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 1 cut(s) 53
MaeI CTAG 2 cut(s) 99, 261
MaeII ACGT 1 cut(s) 159
MalI GATC 2 cut(s) 129, 279
MboI GATC 2 cut(s) 127, 277
MboII GAAGA 3 cut(s) 243, 297, 300
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 1 cut(s) 139
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 6 cut(s) 81, 84, 111, 160, 214, 294
MslI CAYNNNNRTG 1 cut(s) 83
NdeII GATC 2 cut(s) 127, 277
NlaIII CATG 3 cut(s) 118, 325, 336
NlaIV GGNNCC 1 cut(s) 69
OliI CACNNNNGTG 1 cut(s) 83
PciSI GCTCTTC 2 cut(s) 11, 256
PfeI GAWTC 1 cut(s) 58
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 2 cut(s) 37, 181
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 83
SacI GAGCTC 1 cut(s) 92
SapI GCTCTTC 2 cut(s) 11, 256
Sau3AI GATC 2 cut(s) 127, 277
Sau96I GGNCC 2 cut(s) 37, 181
ScaI AGTACT 1 cut(s) 19
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 1 cut(s) 92
SetI ASST 5 cut(s) 92, 100, 122, 162, 262
SmiMI CAYNNNNRTG 1 cut(s) 83
SnaBI TACGTA 1 cut(s) 160
Sse9I AATT 1 cut(s) 139
SspMI CTAG 2 cut(s) 99, 261
SstI GAGCTC 1 cut(s) 92
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 152, 169
TasI AATT 1 cut(s) 139
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 1 cut(s) 58
TscAI CASTG 2 cut(s) 129, 303
TspRI CASTG 2 cut(s) 129, 303
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XspI CTAG 2 cut(s) 99, 261
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.