Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0024776

Physical Location & Seq

Genomic Coordinates Forward (+)

44032115 .. 44033434

Gene Structure 1320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0321400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGAAGACCGTGGCGAGCCTAACTTGTACCTTCCACCAGAGATTATGGATGATATTCTTTTATGGCTACCAGCCAAGTCCTTATGCCGCTTCAAGTGTGTATCAAAACCATGGAAAGCCATGATATCCGACACCCATTTTGTTAAGAGGCACATCAACAGAGCCACTGAGAACAAGGATGTATTCCTCCAAAGAAGAAGAGTGATATTCACCGACGCGGCAGACAATGGTCTTTATACTTTGGACTTAGATGAGTTTCTCAAAAATCATAAACATGTGCTTCTTAAGAACCATGCGGCTGATACAGATAATGGTATTGATAACGATGATGATGAAGAAGATGAACAAGTAGCTGCCACTAAGCTCGATTATATTTACCGTGAGCAGCCAAGTGTTCGAGTTCCGTTTTTCCATTCCTGCAATGGCCTGATTCTCCTCGAGTTATCTGATTTGGAGTTATATTTGGTTAACCCTGCAACAAGTGAATCCAAGCATCTAGCAAAACCACCACTAGATTATTACGAGTTCCATAATTATAATTATCACCTATATGGGTTTGGTTTTGATTCCTCCTCTTCTCAATACCAGTTGGTTCAGGGAGACATTTGTATACATGATGATGATATTTTTTTAGGGTGGTGGGGAACCTGGTTTAGTGTCTATAACTTTGAAACTGATTCGTGGCGACATAAATTATCATCCCCGCATCCTTACATTCCTGCAAGTTCACAAATGCATCGAAACGAAAATGGGGTCATGTTGAATGGTCGTTTTCATTGGTTGATGAAGTCGTTGAAAAGATACAATTATGATGATGAGGCATTTGTGATTGTAGCTTTGGATGCACCGTTGATACGGACTCGAGAAATTCCACTACCGCCTGAATTATCCAGTGGCAGTCAATTGGTGAAACTAGGGGCCTTTAGAGAGTGGTTATGCATAACATTAGCGACAGTGGAGCCCCATCATGCAGAAACATATAGTGAGTTTTGGGTCATGAAGGAATATGGAGTGAGGGAGTCGTGGACTAAAATGAGGGTCTCCATCCCTTATGCTGAGTTATCACACTCTGGTTTTTGGACGGAATCTCATGATTTGATGGTTTTTGGAGAAAGGTTAATTTTGTACAATTTTGATGAAGAAAATCCACAAAGCTTCCAGAATTTATCGGTTCGCGAAATTGGCAAAGTTGGTAGAGTTGGAGTATACATTGAGAGCCTTGTTTCAGTTAGGGATCTCATAAGGGATCTCAACAACATGAGAATAAATCCATGGATAGACAGGAGACGTGGAAAATACTCTTATCAATCTGCAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0032973 GO:0034220 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0140115 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

439

Amino Acids

51.37

Weight (kDa)

5.51

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	10 - 50	8.5e-08	F-box-like
F-box	PF00646	11 - 47	3.1e-08	F-box domain
FBA_1	PF07734	131 - 409	4.7e-20	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024776)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0365371
rosa_rugosa	Rorug01G0321400
rosa_samantha	Rh1BG291800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AccI	GTMKAC	2 cut(s)	610, 1206
AccII	CGCG	2 cut(s)	218, 1176
AciI	CCGC	5 cut(s)	88, 218, 296, 704, 878
AclWI	GGATC	2 cut(s)	1242, 1254
AcsI	RAATTY	2 cut(s)	867, 1162
AfaI	GTAC	2 cut(s)	29, 1127
AflII	CTTAAG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	4 cut(s)	94, 671, 763, 796
AjiI	CACGTC	1 cut(s)	1289
AjnI	CCWGG	1 cut(s)	647
AluBI	AGCT	4 cut(s)	353, 364, 836, 1155
AluI	AGCT	4 cut(s)	353, 364, 836, 1155
Alw26I	GTCTC	3 cut(s)	594, 1045, 1279
AlwI	GGATC	2 cut(s)	1242, 1254
Ama87I	CYCGRG	2 cut(s)	437, 861
AoxI	GGCC	2 cut(s)	424, 918
ApeKI	GCWGC	2 cut(s)	353, 385
ApoI	RAATTY	2 cut(s)	867, 1162
ArsI	GACNNNNNNTTYG	4 cut(s)	122, 154, 738, 770
AspS9I	GGNCC	1 cut(s)	918
AsuHPI	GGTGA	3 cut(s)	202, 536, 919
AvaI	CYCGRG	2 cut(s)	437, 861
BanII	GRGCYC	1 cut(s)	963
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	340, 397
BccI	CCATC	3 cut(s)	972, 1052, 1093
BciT130I	CCWGG	1 cut(s)	649
BcoDI	GTCTC	3 cut(s)	594, 1045, 1279
BfaI	CTAG	4 cut(s)	497, 512, 914, 1318
BfmI	CTRYAG	1 cut(s)	1311
BfrI	CTTAAG	1 cut(s)	284
BisI	GCNGC	5 cut(s)	88, 219, 297, 354, 386
BlsI	GCNGC	5 cut(s)	89, 220, 298, 355, 387
Bme1390I	CCNGG	1 cut(s)	649
BmeT110I	CYCGRG	2 cut(s)	437, 861
BmgBI	CACGTC	1 cut(s)	1289
BmgT120I	GGNCC	1 cut(s)	918
BmiI	GGNNCC	3 cut(s)	646, 919, 960
BmrFI	CCNGG	1 cut(s)	649
BmsI	GCATC	4 cut(s)	502, 715, 745, 832
BoxI	GACNNNNGTC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	1045
BsaJI	CCNNGG	3 cut(s)	10, 110, 1271
Bse1I	ACTGG	2 cut(s)	586, 891
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	649
BseDI	CCNNGG	3 cut(s)	10, 110, 1271
BseGI	GGATG	6 cut(s)	55, 184, 698, 706, 847, 1044
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	159, 1047
BseNI	ACTGG	2 cut(s)	586, 891
BseRI	GAGGAG	2 cut(s)	425, 562
BseXI	GCAGC	2 cut(s)	340, 397
Bsh1236I	CGCG	2 cut(s)	218, 1176
BshFI	GGCC	2 cut(s)	426, 920
BsiHKCI	CYCGRG	2 cut(s)	437, 861
BsmAI	GTCTC	3 cut(s)	594, 1045, 1279
BsmBI	CGTCTC	1 cut(s)	1279
BsnI	GGCC	2 cut(s)	426, 920
Bso31I	GGTCTC	1 cut(s)	1045
BsoBI	CYCGRG	2 cut(s)	437, 861
Bsp1286I	GDGCHC	1 cut(s)	963
Bsp1407I	TGTACA	1 cut(s)	1125
Bsp143I	GATC	2 cut(s)	1234, 1246
Bsp19I	CCATGG	2 cut(s)	110, 1271
Bsp68I	TCGCGA	1 cut(s)	1176
BspACI	CCGC	5 cut(s)	88, 218, 296, 704, 878
BspANI	GGCC	2 cut(s)	426, 920
BspCNI	CTCAG	2 cut(s)	160, 1048
BspFNI	CGCG	2 cut(s)	218, 1176
BspHI	TCATGA	2 cut(s)	996, 1090
BspLI	GGNNCC	3 cut(s)	646, 919, 960
BspMAI	CTGCAG	1 cut(s)	1315
BspPI	GGATC	2 cut(s)	1242, 1254
BspTI	CTTAAG	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	1045
BsrDI	GCAATG	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	1125
BsrI	ACTGG	2 cut(s)	586, 891
BssECI	CCNNGG	3 cut(s)	10, 110, 1271
BssMI	GATC	2 cut(s)	1234, 1246
BssNAI	GTATAC	2 cut(s)	611, 1207
BssT1I	CCWWGG	2 cut(s)	110, 1271
Bst1107I	GTATAC	2 cut(s)	611, 1207
Bst2UI	CCWGG	1 cut(s)	649
Bst4CI	ACNGT	4 cut(s)	11, 380, 849, 955
Bst6I	CTCTTC	2 cut(s)	193, 580
BstAFI	CTTAAG	1 cut(s)	284
BstAUI	TGTACA	1 cut(s)	1125
BstC8I	GCNNGC	2 cut(s)	17, 1315
BstDEI	CTNAG	4 cut(s)	168, 247, 360, 1056
BstDSI	CCRYGG	3 cut(s)	10, 110, 1271
BstF5I	GGATG	6 cut(s)	55, 184, 698, 706, 847, 1044
BstFNI	CGCG	2 cut(s)	218, 1176
BstKTI	GATC	2 cut(s)	1237, 1249
BstMAI	GTCTC	3 cut(s)	594, 1045, 1279
BstMBI	GATC	2 cut(s)	1234, 1246
BstMWI	GCNNNNNNNGC	2 cut(s)	842, 1182
BstNI	CCWGG	1 cut(s)	649
BstNSI	RCATGY	1 cut(s)	278
BstPAI	GACNNNNGTC	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	647
BstSFI	CTRYAG	1 cut(s)	1311
BstUI	CGCG	2 cut(s)	218, 1176
BstV1I	GCAGC	2 cut(s)	340, 397
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	1234, 1246
BstYI	RGATCY	2 cut(s)	1234, 1246
BstZ17I	GTATAC	2 cut(s)	611, 1207
BsuRI	GGCC	2 cut(s)	426, 920
BtgI	CCRYGG	3 cut(s)	10, 110, 1271
BtrI	CACGTC	1 cut(s)	1289
BtsCI	GGATG	6 cut(s)	55, 184, 698, 706, 847, 1044
BtsIMutI	CAGTG	3 cut(s)	165, 898, 960
BtuMI	TCGCGA	1 cut(s)	1176
Cac8I	GCNNGC	2 cut(s)	17, 1315
CciI	TCATGA	2 cut(s)	996, 1090
Cfr13I	GGNCC	1 cut(s)	918
CseI	GACGC	1 cut(s)	224
CsiI	ACCWGGT	1 cut(s)	647
Csp6I	GTAC	2 cut(s)	28, 1126
CviQI	GTAC	2 cut(s)	28, 1126
DdeI	CTNAG	4 cut(s)	168, 247, 360, 1056
DpnI	GATC	2 cut(s)	1236, 1248
DpnII	GATC	2 cut(s)	1234, 1246
Eam1104I	CTCTTC	2 cut(s)	193, 580
EarI	CTCTTC	2 cut(s)	193, 580
Eco130I	CCWWGG	2 cut(s)	110, 1271
Eco24I	GRGCYC	1 cut(s)	963
Eco31I	GGTCTC	1 cut(s)	1045
Eco32I	GATATC	1 cut(s)	126
Eco88I	CYCGRG	2 cut(s)	437, 861
EcoO109I	RGGNCCY	1 cut(s)	918
EcoRII	CCWGG	1 cut(s)	647
EcoRV	GATATC	1 cut(s)	126
EcoT14I	CCWWGG	2 cut(s)	110, 1271
EcoT22I	ATGCAT	2 cut(s)	738, 941
EcoT38I	GRGCYC	1 cut(s)	963
ErhI	CCWWGG	2 cut(s)	110, 1271
Esp3I	CGTCTC	1 cut(s)	1279
FauI	CCCGC	1 cut(s)	711
FblI	GTMKAC	2 cut(s)	610, 1206
Fnu4HI	GCNGC	5 cut(s)	88, 219, 297, 354, 386
FokI	GGATG	6 cut(s)	62, 191, 685, 693, 854, 1031
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	5 cut(s)	88, 219, 297, 354, 386
FspBI	CTAG	4 cut(s)	497, 512, 914, 1318
GluI	GCNGC	5 cut(s)	88, 219, 297, 354, 386
HaeIII	GGCC	2 cut(s)	426, 920
HgaI	GACGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	1153
HinfI	GANTC	7 cut(s)	430, 485, 566, 677, 859, 1019, 1085
HpaI	GTTAAC	1 cut(s)	469
HphI	GGTGA	3 cut(s)	202, 536, 919
Hpy166II	GTNNAC	5 cut(s)	469, 611, 728, 1026, 1207
Hpy188I	TCNGA	2 cut(s)	130, 448
Hpy188III	TCNNGA	5 cut(s)	863, 997, 1091, 1159, 1175
Hpy8I	GTNNAC	5 cut(s)	469, 611, 728, 1026, 1207
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	41, 994
HpyCH4III	ACNGT	4 cut(s)	11, 380, 849, 955
HpyCH4IV	ACGT	1 cut(s)	1288
HpyCH4V	TGCA	8 cut(s)	420, 476, 722, 736, 845, 939, 971, 1313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	842, 1182
HpyF3I	CTNAG	4 cut(s)	168, 247, 360, 1056
HpySE526I	ACGT	1 cut(s)	1288
KspAI	GTTAAC	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	1234, 1246
LmnI	GCTCC	1 cut(s)	958
Lsp1109I	GCAGC	2 cut(s)	340, 397
LweI	GCATC	4 cut(s)	502, 715, 745, 832
MabI	ACCWGGT	1 cut(s)	647
MaeI	CTAG	4 cut(s)	497, 512, 914, 1318
MaeII	ACGT	1 cut(s)	1288
MalI	GATC	2 cut(s)	1236, 1248
MboI	GATC	2 cut(s)	1234, 1246
MboII	GAAGA	7 cut(s)	17, 207, 210, 347, 350, 567, 1151
MfeI	CAATTG	1 cut(s)	902
MflI	RGATCY	2 cut(s)	1234, 1246
MhlI	GDGCHC	1 cut(s)	963
MlyI	GAGTC	2 cut(s)	853, 1028
MmeI	TCCRAC	2 cut(s)	153, 1180
MnlI	CCTC	8 cut(s)	141, 197, 446, 580, 583, 811, 1008, 1029
Mph1103I	ATGCAT	2 cut(s)	738, 941
MseI	TTAA	4 cut(s)	144, 285, 468, 1118
MslI	CAYNNNNRTG	3 cut(s)	273, 549, 618
MspCI	CTTAAG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	649
MunI	CAATTG	1 cut(s)	902
MvaI	CCWGG	1 cut(s)	649
MvnI	CGCG	2 cut(s)	218, 1176
MwoI	GCNNNNNNNGC	2 cut(s)	842, 1182
NcoI	CCATGG	2 cut(s)	110, 1271
NdeII	GATC	2 cut(s)	1234, 1246
NlaIV	GGNNCC	3 cut(s)	646, 919, 960
NruI	TCGCGA	1 cut(s)	1176
NsiI	ATGCAT	2 cut(s)	738, 941
NspI	RCATGY	1 cut(s)	278
PaeR7I	CTCGAG	2 cut(s)	437, 861
PagI	TCATGA	2 cut(s)	996, 1090
PciI	ACATGT	1 cut(s)	274
PfeI	GAWTC	5 cut(s)	430, 485, 566, 677, 1085
PkrI	GCNGC	5 cut(s)	89, 220, 298, 355, 387
PleI	GAGTC	2 cut(s)	853, 1027
PpsI	GAGTC	2 cut(s)	853, 1027
PscI	ACATGT	1 cut(s)	274
PshAI	GACNNNNGTC	1 cut(s)	228
PsiI	TTATAA	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	647
PspN4I	GGNNCC	3 cut(s)	646, 919, 960
PspPI	GGNCC	1 cut(s)	918
PspXI	VCTCGAGB	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	1315
PsuI	RGATCY	2 cut(s)	1234, 1246
RruI	TCGCGA	1 cut(s)	1176
RsaI	GTAC	2 cut(s)	29, 1127
RsaNI	GTAC	2 cut(s)	28, 1126
RseI	CAYNNNNRTG	3 cut(s)	273, 549, 618
SaqAI	TTAA	4 cut(s)	144, 285, 468, 1118
SatI	GCNGC	5 cut(s)	88, 219, 297, 354, 386
Sau3AI	GATC	2 cut(s)	1234, 1246
Sau96I	GGNCC	1 cut(s)	918
SchI	GAGTC	2 cut(s)	853, 1028
ScrFI	CCNGG	1 cut(s)	649
SduI	GDGCHC	1 cut(s)	963
SetI	ASST	9 cut(s)	33, 355, 366, 549, 650, 838, 1118, 1157, 1291
SexAI	ACCWGGT	1 cut(s)	647
SfaNI	GCATC	4 cut(s)	502, 715, 745, 832
SfcI	CTRYAG	1 cut(s)	1311
Sfr274I	CTCGAG	2 cut(s)	437, 861
SlaI	CTCGAG	2 cut(s)	437, 861
SmiMI	CAYNNNNRTG	3 cut(s)	273, 549, 618
SmlI	CTYRAG	3 cut(s)	284, 437, 861
SmoI	CTYRAG	3 cut(s)	284, 437, 861
SsiI	CCGC	5 cut(s)	88, 218, 296, 704, 878
SspMI	CTAG	4 cut(s)	497, 512, 914, 1318
StyD4I	CCNGG	1 cut(s)	647
StyI	CCWWGG	2 cut(s)	110, 1271
TaaI	ACNGT	4 cut(s)	11, 380, 849, 955
TaiI	ACGT	1 cut(s)	1291
TaqI	TCGA	5 cut(s)	366, 397, 438, 739, 862
TatI	WGTACW	1 cut(s)	1125
TauI	GCSGC	3 cut(s)	90, 221, 299
TfiI	GAWTC	5 cut(s)	430, 485, 566, 677, 1085
Tru1I	TTAA	4 cut(s)	144, 285, 468, 1118
Tru9I	TTAA	4 cut(s)	144, 285, 468, 1118
TscAI	CASTG	3 cut(s)	172, 898, 960
TseI	GCWGC	2 cut(s)	353, 385
TspDTI	ATGAA	6 cut(s)	348, 357, 764, 800, 1013, 1152
TspGWI	ACGGA	3 cut(s)	393, 871, 1097
TspRI	CASTG	3 cut(s)	172, 898, 960
Vha464I	CTTAAG	1 cut(s)	284
XapI	RAATTY	2 cut(s)	867, 1162
XceI	RCATGY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XhoI	CTCGAG	2 cut(s)	437, 861
XmiI	GTMKAC	2 cut(s)	610, 1206
XspI	CTAG	4 cut(s)	497, 512, 914, 1318
Zsp2I	ATGCAT	2 cut(s)	738, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.