Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0024776

Physical Location & Seq

Genomic Coordinates Reverse (-)

42761221 .. 42762235

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG291800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAGCCACTACACCTTTGTGGTATATCGTATGGCCATTGCAACTGCCTTGGCATGGTACCTAGAGAGACATTCTAGGCCTAAAATGACTATCAAGGTCATGGCAAAGATCATGCTGCCAAGCATGTTTGAGCAAGTAATTTTTTGTTCATTGCAACAATTTTTTTCTAATCCTCTGTTTTTAATACTTTGCAGCCCTGTAATGAACCAAAACCTATACTACGTGGGCATGGAGAACTTCAATGCCACATTCACATCGGCCATGTGCCACATGCTTCCGGTGTTTGCATTTGTTACTACTCCGCCTTGGGTTCTTACTCGGTTCATACATGATACATTTCGACCAGTACGTCAAGTCGACTACCACATGTCGGATAATCAATGTAGTCGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0032973 GO:0034220 GO:0042592 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055081 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0080144 GO:0098656 GO:0140115 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

131

Amino Acids

15.49

Weight (kDa)

9.27

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024776)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0365371
rosa_rugosa	Rorug01G0321400
rosa_samantha	Rh1BG291800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	348
Acc65I	GGTACC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	57
AccI	GTMKAC	2 cut(s)	357, 388
AciI	CCGC	1 cut(s)	302
AcoI	YGGCCR	2 cut(s)	33, 258
AfaI	GTAC	2 cut(s)	59, 348
AfiI	CCNNNNNNNGG	2 cut(s)	54, 370
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	1 cut(s)	241
AleI	CACNNNNGTG	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	3 cut(s)	33, 77, 258
ApeKI	GCWGC	2 cut(s)	115, 192
Asp718I	GGTACC	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	57
BbvI	GCAGC	2 cut(s)	102, 204
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	62, 75
BisI	GCNGC	2 cut(s)	116, 193
BlsI	GCNGC	2 cut(s)	117, 194
BmiI	GGNNCC	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	48, 305
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 370
Bse1I	ACTGG	1 cut(s)	344
Bse3DI	GCAATG	2 cut(s)	36, 149
BseDI	CCNNGG	2 cut(s)	48, 305
BseLI	CCNNNNNNNGG	2 cut(s)	54, 370
BseMI	GCAATG	2 cut(s)	36, 149
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	102, 204
BshFI	GGCC	3 cut(s)	35, 79, 260
BshNI	GGYRCC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	54, 370
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	3 cut(s)	35, 79, 260
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	3 cut(s)	35, 79, 260
BspLI	GGNNCC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	57
BsrDI	GCAATG	2 cut(s)	36, 149
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	48, 305
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	48, 305
Bst4CI	ACNGT	1 cut(s)	393
BstBAI	YACGTR	1 cut(s)	223
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	108
BstNSI	RCATGY	3 cut(s)	127, 274, 370
BstV1I	GCAGC	2 cut(s)	102, 204
BsuRI	GGCC	3 cut(s)	35, 79, 260
Csp6I	GTAC	2 cut(s)	58, 347
CviAII	CATG	9 cut(s)	54, 100, 112, 124, 229, 262, 271, 329, 367
CviJI	RGCY	5 cut(s)	6, 35, 79, 195, 260
CviKI_1	RGCY	5 cut(s)	6, 35, 79, 195, 260
CviQI	GTAC	2 cut(s)	58, 347
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
DrdI	GACNNNNNNGTC	1 cut(s)	348
DseDI	GACNNNNNNGTC	1 cut(s)	348
EaeI	YGGCCR	2 cut(s)	33, 258
EciI	GGCGGA	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	48, 305
Eco147I	AGGCCT	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	48, 305
ErhI	CCWWGG	2 cut(s)	48, 305
FaeI	CATG	9 cut(s)	57, 103, 115, 127, 232, 265, 274, 332, 370
FatI	CATG	9 cut(s)	53, 99, 111, 123, 228, 261, 270, 328, 366
FblI	GTMKAC	2 cut(s)	357, 388
Fnu4HI	GCNGC	2 cut(s)	116, 193
Fsp4HI	GCNGC	2 cut(s)	116, 193
FspBI	CTAG	2 cut(s)	62, 75
GluI	GCNGC	2 cut(s)	116, 193
HaeIII	GGCC	3 cut(s)	35, 79, 260
HapII	CCGG	1 cut(s)	278
Hin1II	CATG	9 cut(s)	57, 103, 115, 127, 232, 265, 274, 332, 370
HincII	GTYRAC	2 cut(s)	358, 389
HindII	GTYRAC	2 cut(s)	358, 389
HpaII	CCGG	1 cut(s)	278
Hpy166II	GTNNAC	2 cut(s)	358, 389
Hpy188I	TCNGA	1 cut(s)	373
Hpy8I	GTNNAC	2 cut(s)	358, 389
Hpy99I	CGWCG	1 cut(s)	393
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	2 cut(s)	222, 349
HpyCH4V	TGCA	4 cut(s)	41, 154, 192, 287
HpySE526I	ACGT	2 cut(s)	222, 349
Hsp92II	CATG	9 cut(s)	57, 103, 115, 127, 232, 265, 274, 332, 370
KpnI	GGTACC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	108
LpnPI	CCDG	3 cut(s)	210, 291, 357
Lsp1109I	GCAGC	2 cut(s)	102, 204
MaeI	CTAG	2 cut(s)	62, 75
MaeII	ACGT	2 cut(s)	222, 349
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	2 cut(s)	138, 158
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	1 cut(s)	183
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	35
MspI	CCGG	1 cut(s)	278
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	9 cut(s)	57, 103, 115, 127, 232, 265, 274, 332, 370
NlaIV	GGNNCC	1 cut(s)	59
NspI	RCATGY	3 cut(s)	127, 274, 370
OliI	CACNNNNGTG	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	79
PciI	ACATGT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	346
PkrI	GCNGC	2 cut(s)	117, 194
Ppu21I	YACGTR	1 cut(s)	223
PscI	ACATGT	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	59
RsaI	GTAC	2 cut(s)	59, 348
RsaNI	GTAC	2 cut(s)	58, 347
RseI	CAYNNNNRTG	1 cut(s)	17
SalI	GTCGAC	2 cut(s)	356, 387
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	2 cut(s)	116, 193
Sau3AI	GATC	1 cut(s)	108
SetI	ASST	6 cut(s)	17, 63, 99, 216, 225, 352
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	138, 158
SseBI	AGGCCT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	2 cut(s)	62, 75
StuI	AGGCCT	1 cut(s)	79
StyI	CCWWGG	2 cut(s)	48, 305
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	2 cut(s)	225, 352
TaqI	TCGA	3 cut(s)	340, 357, 388
TasI	AATT	2 cut(s)	138, 158
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseI	GCWGC	2 cut(s)	115, 192
TspDTI	ATGAA	3 cut(s)	138, 218, 313
XceI	RCATGY	3 cut(s)	127, 274, 370
XmiI	GTMKAC	2 cut(s)	357, 388
XspI	CTAG	2 cut(s)	62, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.