Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013066

Physical Location & Seq

Genomic Coordinates Reverse (-)

47061995 .. 47065429

Gene Structure 3435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0353600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2247 bp

ATGTCTCGTGTAGCAGCAGAGAATCAGATATCGCCGTTTTTCTCTATGGAGCTCGACGACTTCCCACGCGCCTCCCACGGCGCGTCACCCTCACTCGGCCAGCTTCTGAAGCACGTCGGAGATGTCCGCAAGGAGGCCACCGGCGACGGCGGCGAGACTCCGATGCATCACCACCAGGTGCTCGACATGGGCGACGAGAGTCTTGAAAACCCGAGGTCGCTTCCGTTCGTGCTCTCGTTCACTAACCTGACTTACAGCGTCAAGATTCGCCGGAAATTCAGTCTTTCCGGGATGTTTACTGGCCAGAACAACCGTCTCGGCGCTGCGACGCTGTCGGAGCCCGTAGGAGGAGAGAGCCTGTTCACGAGGTCCAAGACCCTGCTGAACGACATCTCCGGCGAGGCTAGAGAAGGAGAAGTGCTGGCGGTGCTCGGCGCTAGCGGTTCCGGCAAGTCGACTCTCATCGACGCCTTGGCCAATCGCATCGCCAAGGGAAGCCTGAAAGGAAAGGTCAGCCTCAACGGCGAGGTCCTGGAGTCGCGGCTGCTCAAAGTGATCTCAGCTTACGTCATGCAGGACGATCTGCTATTCCCGATGCTGACGGTGGAGGAGACGCTCATGTTCGCCGCCGAGTTCCGCCTCCCTAGGGCGCTCTCGAAATCCAAGAAGAAAATGCGGGTCCAGGCGCTGATAGACCAGCTCGGCCTCCGCAACGCGGCCAGCACCATCATCGGGGACGAGGGCCACCGCGGCGTCTCCGGAGGAGAGCGCCGCCGCGTCTCGATCGGAATCGACATCGTTCACGACCCGATCATCCTCTTCCTAGACGAGCCGACCTCCGGCCTCGACTCCACCTCCGCCTTCATGGTCGTCAAGGTCCTCCAGCGGATCGCTCAGTCCGGCAGCATTGTGGTCATGTCCGTACACCAGCCGAGCTACAGAATCTTGGGCCTGCTGGACCGCCTCCTCTTCCTCAGCCGCGGCCAAACCGTTTTCAGCGGCTCGCCAGCTCAGCTTCCCTCCTACTTCGCCGAGTTCGGGCGGCCCATACCCGACTCCGAAAACAAAACCGAGTTCGCTCTTGACCTGATCCGAGAACTGGAAGGCTCCCCCGGCGGGACCCAATCCCTCGTCGAGTTCAACAACTCCTGGCAGACCATGAAGCACAGCGATCACTACCGCTCCGCCACCGACATACGACACGTCGTTCCCCTCCAAGAAGCCATCTCCGCCAGCATTTCCCGTGGAAAGCTAGTCTCCGGCGCCACCAACAACGACGCCAGCCCCAACTCCATGGTCCCCACCTTCGCCAACCCCATCTGGATCGAAATGGCCGTCCTCGCGAGACGCTCCATGAAAAACTCGAGACGAATGCCGGAGCTGTTCGGAATCCGGCTCGGCGCCGTCGTGGTCACCGGGTTCATCCTCGCCACCATGTTCTGGAACCTCGATAATACCCCTAAGGGAGTCCAAGAACGCCTCGGGTTCATCGCCTTCGCCATGTCCACCACCTTCTACACCTGCGCCGACGCCTTACCCGTCTTCCTCCAAGAACGCTACATCTTCATGAGAGAGACCGCCTACAATGCCTACCGTAGATCCTCCTACGTTCTTTCACACTCTCTAGTGGCTCTTCCGGCGCTGGTTTTCCTCTCCGCCGCGTTCTCCGCCATCACATTCTGGGCCGTGGGCCTCGACGGCGGGCTCTCGGGGTTCCTATTCTACTTCCTCATCATCTTCGCCTCGTTCTGGGCGGGAAGCTCATTCGTCACATTCCTCTCCGGCGTCGTCCCCCACGTCATGCTCGGCTACACTATAGTCGTGGCAATCTTAGCCTACTTCCTTCTCTTCAGTGGCTTCTTCATAAACCGTAACAGAATCCCGGACTACTGGATTTGGTTCCACTACATGTCACTAGTGAAGTACCCCTACGAGGCTGTAATGCAGAACGAGTTTCAGGACCCGACTAAGTGCTTCGTGAGGGGTGTACAGATATTTGATAATACTCCGCTGGCTTCGGTCCCGGCGGCGCTGAAGGTGAAGCTTCTGGGCAGCATGAGCGAGACGCTGGGGATGACGATTACGAGGACGACTTGCTTGACGACTGGGAGTGATTTATTGAAGCAGCAGGGAGTGACTCAGCTGAGCAAGTGGAATTGCTTGTGGATCACGGTGGCCTGGGGGTTTCTGTTCAGGATTCTCTTCTATTTTTCGTTGCTGATTGGGAGCAAGAACAAGAGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009653 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0009987 GO:0010208 GO:0010224 GO:0010268 GO:0010584 GO:0010817 GO:0010927 GO:0016043 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0022414 GO:0022607 GO:0030154 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0042445 GO:0042446 GO:0042592 GO:0043062 GO:0044085 GO:0044238 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055088 GO:0055114 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080132 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1905392 GO:1905393 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

748

Amino Acids

82.74

Weight (kDa)

9.21

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	128 - 280	7.1e-26	ABC transporter
ABC2_membrane_7	PF19055	309 - 445	1.4e-06	ABC-2 type transporter
ABC2_membrane	PF01061	445 - 652	5.5e-49	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05690 AT5G05690
fragaria_vesca	FvH4_7g24370
malus_domestica	MD01G1152100.v1.1 MD07G1220800.v1.1
prunus_persica	Prupe.2G249100_v2.0.a1 Prupe.2G249100_v2.0.a1
pyrus_communis	pycom07g19970
rosa_chinensis	RchiOBHm_Chr1g0370071
rosa_laevigata	RLG00000027077
rosa_multiflora	Rmu_sc0005056.1_g000010
rosa_roxburghii	Rroxscaffold_4G00286850 Rroxscaffold_4G00287180
rosa_rugosa	Rorug01G0353600
rosa_samantha	Rh1AG362300 Rh1BG325500 Rh1CG338800
rosa_wichuraiana	Rw1G031880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1529
Acc36I	ACCTGC	1 cut(s)	1529
AccB1I	GGYRCC	2 cut(s)	1262, 1400
AccB7I	CCANNNNNTGG	1 cut(s)	1440
AccBSI	CCGCTC	1 cut(s)	1182
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
AccIII	TCCGGA	1 cut(s)	758
AclWI	GGATC	5 cut(s)	896, 1084, 1331, 1593, 2174
AcoI	YGGCCR	6 cut(s)	97, 301, 474, 717, 982, 1332
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	3 cut(s)	128, 1834, 2054
AcyI	GRCGYC	7 cut(s)	468, 753, 1263, 1278, 1401, 1530, 1785
AdeI	CACNNNGTG	1 cut(s)	178
AfaI	GTAC	3 cut(s)	924, 1925, 1989
AflIII	ACRYGT	2 cut(s)	1201, 1908
AgsI	TTSAA	3 cut(s)	206, 1141, 2122
AhlI	ACTAGT	1 cut(s)	1915
AjiI	CACGTC	3 cut(s)	115, 1204, 1798
AjnI	CCWGG	5 cut(s)	174, 531, 681, 1148, 2177
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
Alw21I	GWGCWC	4 cut(s)	54, 183, 234, 432
AlwI	GGATC	5 cut(s)	896, 1084, 1331, 1593, 2174
AlwNI	CAGNNNCTG	2 cut(s)	106, 688
Ama87I	CYCGRG	4 cut(s)	211, 1363, 1481, 1708
Aor13HI	TCCGGA	1 cut(s)	758
ApeKI	GCWGC	6 cut(s)	14, 323, 544, 903, 2052, 2125
ApoI	RAATTY	1 cut(s)	275
ArsI	GACNNNNNNTTYG	2 cut(s)	1320, 1352
AspA2I	CCTAGG	1 cut(s)	644
AsuC2I	CCSGG	5 cut(s)	289, 1113, 1417, 1883, 2024
AsuHPI	GGTGA	4 cut(s)	78, 161, 1405, 2050
AsuNHI	GCTAGC	1 cut(s)	437
AvaI	CYCGRG	4 cut(s)	211, 1363, 1481, 1708
AvaII	GGWCC	9 cut(s)	369, 529, 679, 877, 958, 1119, 1297, 1960, 2020
AvrII	CCTAGG	1 cut(s)	644
AxyI	CCTNAGG	1 cut(s)	1461
BalI	TGGCCA	2 cut(s)	303, 476
BanI	GGYRCC	2 cut(s)	1262, 1400
BanII	GRGCYC	3 cut(s)	54, 342, 1707
BarI	GAAGNNNNNNTAC	2 cut(s)	1913, 1945
BauI	CACGAG	2 cut(s)	6, 364
BbsI	GAAGAC	1 cut(s)	1534
Bbv12I	GWGCWC	4 cut(s)	54, 183, 234, 432
BbvCI	CCTCAGC	1 cut(s)	974
BbvI	GCAGC	6 cut(s)	26, 310, 531, 915, 2064, 2137
BccI	CCATC	4 cut(s)	734, 1232, 1325, 1679
BceAI	ACGGC	8 cut(s)	19, 94, 163, 538, 1319, 1388, 1670, 1714
BcgI	CGANNNNNNTGC	4 cut(s)	712, 746, 1354, 1388
BciT130I	CCWGG	5 cut(s)	176, 533, 683, 1150, 2179
BcnI	CCSGG	5 cut(s)	289, 1113, 1417, 1883, 2024
BcuI	ACTAGT	1 cut(s)	1915
BfaI	CTAG	7 cut(s)	405, 438, 645, 824, 1253, 1625, 1916
BfmI	CTRYAG	2 cut(s)	937, 1815
BfoI	RGCGCY	9 cut(s)	324, 438, 653, 689, 772, 1266, 1404, 1643, 2033
BfuAI	ACCTGC	1 cut(s)	1529
BglI	GCCNNNNNGGC	3 cut(s)	522, 750, 1698
BlnI	CCTAGG	1 cut(s)	644
BlpI	GCTNAGC	2 cut(s)	1011, 2144
Bme18I	GGWCC	9 cut(s)	369, 529, 679, 877, 958, 1119, 1297, 1960, 2020
BmeT110I	CYCGRG	4 cut(s)	211, 1363, 1481, 1708
BmgBI	CACGTC	3 cut(s)	115, 1204, 1798
BmrI	ACTGGG	1 cut(s)	2115
BmsI	GCATC	4 cut(s)	153, 175, 492, 585
BmtI	GCTAGC	1 cut(s)	441
BmuI	ACTGGG	1 cut(s)	2115
BoxI	GACNNNNGTC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	1534
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
BpmI	CTGGAG	2 cut(s)	554, 866
Bpu10I	CCTNAGC	1 cut(s)	974
Bpu1102I	GCTNAGC	2 cut(s)	1011, 2144
BpuMI	CCSGG	5 cut(s)	289, 1113, 1417, 1883, 2024
BsaBI	GATNNNNATC	1 cut(s)	788
BsaHI	GRCGYC	7 cut(s)	468, 753, 1263, 1278, 1401, 1530, 1785
BsaI	GGTCTC	1 cut(s)	1568
BsaWI	WCCGGW	1 cut(s)	758
BsaXI	ACNNNNNCTCC	6 cut(s)	377, 407, 839, 869, 1166, 1196
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	4 cut(s)	304, 1104, 1895, 2110
Bse21I	CCTNAGG	1 cut(s)	1461
Bse8I	GATNNNNATC	1 cut(s)	788
BseAI	TCCGGA	1 cut(s)	758
BseBI	CCWGG	5 cut(s)	176, 533, 683, 1150, 2179
BseGI	GGATG	4 cut(s)	297, 813, 1422, 2079
BseJI	GATNNNNATC	1 cut(s)	788
BseMII	CTCAG	6 cut(s)	573, 908, 988, 1025, 2135, 2153
BseNI	ACTGG	4 cut(s)	304, 1104, 1895, 2110
BseRI	GAGGAG	4 cut(s)	363, 623, 777, 956
BseXI	GCAGC	6 cut(s)	26, 310, 531, 915, 2064, 2137
BseYI	CCCAGC	1 cut(s)	2068
Bsh1236I	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
Bsh1285I	CGRYCG	1 cut(s)	786
BshNI	GGYRCC	2 cut(s)	1262, 1400
BsiEI	CGRYCG	1 cut(s)	786
BsiHKAI	GWGCWC	4 cut(s)	54, 183, 234, 432
BsiHKCI	CYCGRG	4 cut(s)	211, 1363, 1481, 1708
BslFI	GGGAC	5 cut(s)	749, 1132, 1283, 1775, 2006
BsmBI	CGTCTC	7 cut(s)	320, 605, 760, 784, 1339, 1360, 2057
BsmFI	GGGAC	5 cut(s)	749, 1132, 1283, 1775, 2006
BsmI	GAATGC	1 cut(s)	1377
Bso31I	GGTCTC	1 cut(s)	1568
BsoBI	CYCGRG	4 cut(s)	211, 1363, 1481, 1708
Bsp1286I	GDGCHC	6 cut(s)	54, 183, 234, 342, 432, 1707
Bsp13I	TCCGGA	1 cut(s)	758
Bsp1407I	TGTACA	1 cut(s)	1987
Bsp1720I	GCTNAGC	2 cut(s)	1011, 2144
Bsp19I	CCATGG	1 cut(s)	1293
Bsp68I	TCGCGA	1 cut(s)	1343
BspCNI	CTCAG	6 cut(s)	572, 907, 987, 1024, 2136, 2152
BspEI	TCCGGA	1 cut(s)	758
BspFNI	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
BspHI	TCATGA	1 cut(s)	1566
BspMI	ACCTGC	1 cut(s)	1529
BspOI	GCTAGC	1 cut(s)	441
BspPI	GGATC	5 cut(s)	896, 1084, 1331, 1593, 2174
BspQI	GCTCTTC	1 cut(s)	1638
BspT107I	GGYRCC	2 cut(s)	1262, 1400
BspTNI	GGTCTC	1 cut(s)	1568
BsrBI	CCGCTC	1 cut(s)	1182
BsrFI	RCCGGY	1 cut(s)	140
BsrGI	TGTACA	1 cut(s)	1987
BsrI	ACTGG	4 cut(s)	304, 1104, 1895, 2110
BssAI	RCCGGY	1 cut(s)	140
BssNI	GRCGYC	7 cut(s)	468, 753, 1263, 1278, 1401, 1530, 1785
BssSI	CACGAG	2 cut(s)	6, 364
BssT1I	CCWWGG	4 cut(s)	471, 489, 644, 1293
Bst2BI	CACGAG	2 cut(s)	6, 364
Bst2UI	CCWGG	5 cut(s)	176, 533, 683, 1150, 2179
Bst4CI	ACNGT	6 cut(s)	314, 604, 991, 1595, 1871, 2173
Bst6I	CTCTTC	5 cut(s)	824, 974, 1638, 1853, 2207
BstACI	GRCGYC	7 cut(s)	468, 753, 1263, 1278, 1401, 1530, 1785
BstAUI	TGTACA	1 cut(s)	1987
BstDEI	CTNAG	9 cut(s)	559, 894, 974, 1011, 1461, 1831, 1968, 2139, 2144
BstDSI	CCRYGG	6 cut(s)	76, 748, 979, 1243, 1293, 1686
BstEII	GGTNACC	1 cut(s)	1411
BstF5I	GGATG	4 cut(s)	297, 813, 1422, 2079
BstFNI	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
BstH2I	RGCGCY	9 cut(s)	324, 438, 653, 689, 772, 1266, 1404, 1643, 2033
BstMCI	CGRYCG	1 cut(s)	786
BstNI	CCWGG	5 cut(s)	176, 533, 683, 1150, 2179
BstNSI	RCATGY	1 cut(s)	1912
BstPAI	GACNNNNGTC	1 cut(s)	198
BstPI	GGTNACC	1 cut(s)	1411
BstSFI	CTRYAG	2 cut(s)	937, 1815
BstUI	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
BstV1I	GCAGC	6 cut(s)	26, 310, 531, 915, 2064, 2137
BstV2I	GAAGAC	1 cut(s)	1534
BstX2I	RGATCY	1 cut(s)	1598
BstXI	CCANNNNNNTGG	1 cut(s)	1294
BstYI	RGATCY	1 cut(s)	1598
Bsu36I	CCTNAGG	1 cut(s)	1461
BtgI	CCRYGG	6 cut(s)	76, 748, 979, 1243, 1293, 1686
BtgZI	GCGATG	2 cut(s)	469, 1474
BtrI	CACGTC	3 cut(s)	115, 1204, 1798
BtsCI	GGATG	4 cut(s)	297, 813, 1422, 2079
BtsIMutI	CAGTG	1 cut(s)	1858
BtuMI	TCGCGA	1 cut(s)	1343
BveI	ACCTGC	1 cut(s)	1529
CaiI	CAGNNNCTG	2 cut(s)	106, 688
CciI	TCATGA	1 cut(s)	1566
Cfr10I	RCCGGY	1 cut(s)	140
Cfr42I	CCGCGG	2 cut(s)	751, 982
CsiI	ACCWGGT	1 cut(s)	174
Csp6I	GTAC	3 cut(s)	923, 1924, 1988
CviQI	GTAC	3 cut(s)	923, 1924, 1988
DdeI	CTNAG	9 cut(s)	559, 894, 974, 1011, 1461, 1831, 1968, 2139, 2144
DinI	GGCGCC	2 cut(s)	1264, 1402
DraIII	CACNNNGTG	1 cut(s)	178
EaeI	YGGCCR	6 cut(s)	97, 301, 474, 717, 982, 1332
Eam1104I	CTCTTC	5 cut(s)	824, 974, 1638, 1853, 2207
EarI	CTCTTC	5 cut(s)	824, 974, 1638, 1853, 2207
EciI	GGCGGA	6 cut(s)	626, 847, 1174, 1219, 1645, 1657
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	4 cut(s)	471, 489, 644, 1293
Eco24I	GRGCYC	3 cut(s)	54, 342, 1707
Eco31I	GGTCTC	1 cut(s)	1568
Eco32I	GATATC	1 cut(s)	30
Eco47I	GGWCC	9 cut(s)	369, 529, 679, 877, 958, 1119, 1297, 1960, 2020
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	3 cut(s)	128, 1834, 2054
Eco81I	CCTNAGG	1 cut(s)	1461
Eco88I	CYCGRG	4 cut(s)	211, 1363, 1481, 1708
Eco91I	GGTNACC	1 cut(s)	1411
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	4 cut(s)	529, 877, 1119, 1960
EcoO65I	GGTNACC	1 cut(s)	1411
EcoRII	CCWGG	5 cut(s)	174, 531, 681, 1148, 2177
EcoRV	GATATC	1 cut(s)	30
EcoT14I	CCWWGG	4 cut(s)	471, 489, 644, 1293
EcoT22I	ATGCAT	1 cut(s)	168
EcoT38I	GRGCYC	3 cut(s)	54, 342, 1707
EgeI	GGCGCC	2 cut(s)	1264, 1402
EheI	GGCGCC	2 cut(s)	1264, 1402
ErhI	CCWWGG	4 cut(s)	471, 489, 644, 1293
Esp3I	CGTCTC	7 cut(s)	320, 605, 760, 784, 1339, 1360, 2057
FaqI	GGGAC	5 cut(s)	749, 1132, 1283, 1775, 2006
FauI	CCCGC	4 cut(s)	669, 1109, 1694, 1747
FblI	GTMKAC	1 cut(s)	455
FokI	GGATG	4 cut(s)	304, 800, 1409, 2086
FriOI	GRGCYC	3 cut(s)	54, 342, 1707
FspBI	CTAG	7 cut(s)	405, 438, 645, 824, 1253, 1625, 1916
GsaI	CCCAGC	1 cut(s)	2072
GsuI	CTGGAG	2 cut(s)	554, 866
HaeII	RGCGCY	9 cut(s)	324, 438, 653, 689, 772, 1266, 1404, 1643, 2033
Hin1I	GRCGYC	7 cut(s)	468, 753, 1263, 1278, 1401, 1530, 1785
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	2042
HphI	GGTGA	4 cut(s)	78, 161, 1405, 2050
Hpy166II	GTNNAC	8 cut(s)	240, 297, 363, 456, 802, 925, 1506, 1988
Hpy188I	TCNGA	9 cut(s)	27, 108, 119, 162, 337, 788, 1060, 1094, 1388
Hpy8I	GTNNAC	8 cut(s)	240, 297, 363, 456, 802, 925, 1506, 1988
HpyAV	CCTTC	8 cut(s)	404, 871, 1097, 1315, 1504, 1522, 1853, 2029
HpyCH4III	ACNGT	6 cut(s)	314, 604, 991, 1595, 1871, 2173
HpyCH4IV	ACGT	5 cut(s)	114, 567, 1203, 1608, 1797
HpyCH4V	TGCA	3 cut(s)	166, 574, 1945
HpyF3I	CTNAG	9 cut(s)	559, 894, 974, 1011, 1461, 1831, 1968, 2139, 2144
HpySE526I	ACGT	5 cut(s)	114, 567, 1203, 1608, 1797
Hsp92I	GRCGYC	7 cut(s)	468, 753, 1263, 1278, 1401, 1530, 1785
KasI	GGCGCC	2 cut(s)	1262, 1400
KflI	GGGWCCC	1 cut(s)	1119
Kpn2I	TCCGGA	1 cut(s)	758
KspI	CCGCGG	2 cut(s)	751, 982
LguI	GCTCTTC	1 cut(s)	1638
LmnI	GCTCC	7 cut(s)	49, 337, 1112, 1187, 1355, 1378, 2226
Lsp1109I	GCAGC	6 cut(s)	26, 310, 531, 915, 2064, 2137
LweI	GCATC	4 cut(s)	153, 175, 492, 585
MabI	ACCWGGT	1 cut(s)	174
MaeI	CTAG	7 cut(s)	405, 438, 645, 824, 1253, 1625, 1916
MaeII	ACGT	5 cut(s)	114, 567, 1203, 1608, 1797
MaeIII	GTNAC	6 cut(s)	84, 1411, 1768, 1871, 1911, 2134
MbiI	CCGCTC	1 cut(s)	1182
MflI	RGATCY	1 cut(s)	1598
MhlI	GDGCHC	6 cut(s)	54, 183, 234, 342, 432, 1707
MlsI	TGGCCA	2 cut(s)	303, 476
MluCI	AATT	2 cut(s)	275, 2155
MluNI	TGGCCA	2 cut(s)	303, 476
Mly113I	GGCGCC	2 cut(s)	1263, 1401
MlyI	GAGTC	8 cut(s)	151, 208, 451, 545, 842, 1049, 1476, 2131
MmeI	TCCRAC	2 cut(s)	97, 315
Mox20I	TGGCCA	2 cut(s)	303, 476
Mph1103I	ATGCAT	1 cut(s)	168
MroI	TCCGGA	1 cut(s)	758
MscI	TGGCCA	2 cut(s)	303, 476
MslI	CAYNNNNRTG	1 cut(s)	1565
Msp20I	TGGCCA	2 cut(s)	303, 476
MspA1I	CMGCKG	6 cut(s)	750, 886, 981, 999, 2011, 2143
Mva1269I	GAATGC	1 cut(s)	1377
MvaI	CCWGG	5 cut(s)	176, 533, 683, 1150, 2179
MvnI	CGCG	9 cut(s)	69, 83, 541, 716, 750, 777, 981, 1343, 1661
NarI	GGCGCC	2 cut(s)	1263, 1401
NciI	CCSGG	5 cut(s)	289, 1113, 1417, 1883, 2024
NcoI	CCATGG	1 cut(s)	1293
NheI	GCTAGC	1 cut(s)	437
NmeAIII	GCCGAG	9 cut(s)	75, 297, 411, 655, 681, 957, 1057, 1377, 1785
NmuCI	GTSAC	5 cut(s)	84, 1411, 1768, 1911, 2134
NruI	TCGCGA	1 cut(s)	1343
NsiI	ATGCAT	1 cut(s)	168
NspI	RCATGY	1 cut(s)	1912
PaeR7I	CTCGAG	1 cut(s)	1363
PagI	TCATGA	1 cut(s)	1566
PaqCI	CACCTGC	1 cut(s)	1529
PciI	ACATGT	1 cut(s)	1908
PciSI	GCTCTTC	1 cut(s)	1638
PcsI	WCGNNNNNNNCGW	5 cut(s)	189, 1332, 1404, 1536, 1794
PctI	GAATGC	1 cut(s)	1377
PfeI	GAWTC	7 cut(s)	22, 265, 789, 942, 1389, 1878, 2197
PflFI	GACNNNGTC	1 cut(s)	331
PflMI	CCANNNNNTGG	1 cut(s)	1440
PfoI	TCCNGGA	3 cut(s)	287, 531, 1881
Ple19I	CGATCG	1 cut(s)	786
PleI	GAGTC	8 cut(s)	151, 207, 451, 544, 842, 1049, 1475, 2131
PluTI	GGCGCC	2 cut(s)	1266, 1404
PpsI	GAGTC	8 cut(s)	151, 207, 451, 544, 842, 1049, 1475, 2131
PpuMI	RGGWCCY	4 cut(s)	529, 877, 1119, 1960
PscI	ACATGT	1 cut(s)	1908
PshAI	GACNNNNGTC	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	54
Psp5II	RGGWCCY	4 cut(s)	529, 877, 1119, 1960
Psp6I	CCWGG	5 cut(s)	174, 531, 681, 1148, 2177
PspEI	GGTNACC	1 cut(s)	1411
PspFI	CCCAGC	1 cut(s)	2068
PspGI	CCWGG	5 cut(s)	174, 531, 681, 1148, 2177
PspPPI	RGGWCCY	4 cut(s)	529, 877, 1119, 1960
PstNI	CAGNNNCTG	2 cut(s)	106, 688
PsuI	RGATCY	1 cut(s)	1598
PsyI	GACNNNGTC	1 cut(s)	331
PvuI	CGATCG	1 cut(s)	786
PvuII	CAGCTG	1 cut(s)	2143
RruI	TCGCGA	1 cut(s)	1343
RsaI	GTAC	3 cut(s)	924, 1925, 1989
RsaNI	GTAC	3 cut(s)	923, 1924, 1988
RseI	CAYNNNNRTG	1 cut(s)	1565
SacI	GAGCTC	1 cut(s)	54
SacII	CCGCGG	2 cut(s)	751, 982
SalI	GTCGAC	1 cut(s)	454
SapI	GCTCTTC	1 cut(s)	1638
SchI	GAGTC	8 cut(s)	151, 208, 451, 545, 842, 1049, 1476, 2131
SduI	GDGCHC	6 cut(s)	54, 183, 234, 342, 432, 1707
SexAI	ACCWGGT	1 cut(s)	174
SfaNI	GCATC	4 cut(s)	153, 175, 492, 585
SfcI	CTRYAG	2 cut(s)	937, 1815
SfoI	GGCGCC	2 cut(s)	1264, 1402
Sfr274I	CTCGAG	1 cut(s)	1363
Sfr303I	CCGCGG	2 cut(s)	751, 982
SgrAI	CRCCGGYG	1 cut(s)	140
SgrBI	CCGCGG	2 cut(s)	751, 982
SinI	GGWCC	9 cut(s)	369, 529, 679, 877, 958, 1119, 1297, 1960, 2020
SlaI	CTCGAG	1 cut(s)	1363
SmiMI	CAYNNNNRTG	1 cut(s)	1565
SmlI	CTYRAG	1 cut(s)	1363
SmoI	CTYRAG	1 cut(s)	1363
SpeI	ACTAGT	1 cut(s)	1915
Sse9I	AATT	2 cut(s)	275, 2155
SspDI	GGCGCC	2 cut(s)	1262, 1400
SspMI	CTAG	7 cut(s)	405, 438, 645, 824, 1253, 1625, 1916
SstI	GAGCTC	1 cut(s)	54
StyI	CCWWGG	4 cut(s)	471, 489, 644, 1293
TaaI	ACNGT	6 cut(s)	314, 604, 991, 1595, 1871, 2173
TaiI	ACGT	5 cut(s)	117, 570, 1206, 1611, 1800
TaqII	GACCGA	1 cut(s)	2008
TasI	AATT	2 cut(s)	275, 2155
TatI	WGTACW	1 cut(s)	1987
TfiI	GAWTC	7 cut(s)	22, 265, 789, 942, 1389, 1878, 2197
TscAI	CASTG	1 cut(s)	1858
TseFI	GTSAC	5 cut(s)	84, 1411, 1768, 1911, 2134
TseI	GCWGC	6 cut(s)	14, 323, 544, 903, 2052, 2125
Tsp45I	GTSAC	5 cut(s)	84, 1411, 1768, 1911, 2134
TspDTI	ATGAA	7 cut(s)	853, 1175, 1370, 1411, 1477, 1555, 1852
TspGWI	ACGGA	2 cut(s)	213, 910
TspRI	CASTG	1 cut(s)	1858
Tth111I	GACNNNGTC	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	1440
VpaK11BI	GGWCC	9 cut(s)	369, 529, 679, 877, 958, 1119, 1297, 1960, 2020
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	1912
XhoI	CTCGAG	1 cut(s)	1363
XmaJI	CCTAGG	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	455
XspI	CTAG	7 cut(s)	405, 438, 645, 824, 1253, 1625, 1916
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.