Rorug02G0134400
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006491
Physical Location & Seq
Forward (+)
11581968 .. 11582183
216 bp
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UTR
Exon/CDS
Intron
Rorug02G0134400.1

Sequence Viewer

Length: 216 bp
ATGCATATATTGCTTGCTCATAGCGGAAAGCTGGCTTTGTCATACGCATTGCTCAGCGCAGATTCTGGTTCCACCATTAAGATCATCAAGAACATAAAGATATGTGAAGACGTACTGTCATGCCTTCATGTGTGGTACGTGCATCAAAGGTTACACCACTTCATGAGATTCCACCACTTCGAAAATGGGACATGTAGTTGCGGGAATTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000022 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000819 GO:0000910 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005876 GO:0006355 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0008088 GO:0008089 GO:0008150 GO:0008574 GO:0009664 GO:0009832 GO:0009889 GO:0009891 GO:0009893 GO:0009937 GO:0009966 GO:0009987 GO:0010215 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010970 GO:0015630 GO:0016043 GO:0016192 GO:0016363 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022607 GO:0023051 GO:0030198 GO:0030496 GO:0030705 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0042127 GO:0042546 GO:0042623 GO:0043062 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0045229 GO:0045893 GO:0045935 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051179 GO:0051225 GO:0051231 GO:0051234 GO:0051252 GO:0051254 GO:0051255 GO:0051256 GO:0051276 GO:0051301 GO:0051641 GO:0051649 GO:0060255 GO:0061640 GO:0065007 GO:0070013 GO:0070726 GO:0070925 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071840 GO:0080090 GO:0090307 GO:0097159 GO:0098813 GO:0098930 GO:0099080 GO:0099081 GO:0099111 GO:0099512 GO:0099513 GO:0140014 GO:1901363 GO:1902680 GO:1902850 GO:1903047 GO:1903506 GO:1903508 GO:1990939 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin

Protein Analysis

71

Amino Acids

8.18

Weight (kDa)

8.46

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DYW_deaminase PF14432 2 - 71 5.7e-19 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 24, 201
AcsI RAATTY 1 cut(s) 205
AfaI GTAC 2 cut(s) 114, 137
AflIII ACRYGT 1 cut(s) 191
AhdI GACNNNNNGTC 1 cut(s) 115
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 65
ApoI RAATTY 1 cut(s) 205
AspLEI GCGC 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 114
BlpI GCTNAGC 1 cut(s) 53
BmeRI GACNNNNNGTC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 180
BsaAI YACGTR 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 67
BslFI GGGAC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 202
Bsp119I TTCGAA 1 cut(s) 180
Bsp143I GATC 1 cut(s) 81
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 2 cut(s) 24, 201
BspCNI CTCAG 1 cut(s) 66
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 70
BspT104I TTCGAA 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 47
BssMI GATC 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 139
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 15, 33
BstDEI CTNAG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNSI RCATGY 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 15, 33
CaiI CAGNNNCTG 1 cut(s) 65
CciI TCATGA 1 cut(s) 162
CfoI GCGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 113, 136
CviAII CATG 4 cut(s) 120, 128, 163, 192
CviJI RGCY 2 cut(s) 31, 35
CviKI_1 RGCY 2 cut(s) 31, 35
CviQI GTAC 2 cut(s) 113, 136
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
DriI GACNNNNNGTC 1 cut(s) 115
Eam1105I GACNNNNNGTC 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 123, 131, 166, 195
FaqI GGGAC 1 cut(s) 202
FatI CATG 4 cut(s) 119, 127, 162, 191
FauI CCCGC 1 cut(s) 194
GlaI GCGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 59
Hin1II CATG 4 cut(s) 123, 131, 166, 195
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 2 cut(s) 62, 168
Hpy188III TCNNGA 2 cut(s) 88, 163
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4IV ACGT 2 cut(s) 111, 138
HpyCH4V TGCA 2 cut(s) 4, 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 2 cut(s) 111, 138
Hsp92II CATG 4 cut(s) 123, 131, 166, 195
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 1 cut(s) 81
LpnPI CCDG 2 cut(s) 17, 51
LweI GCATC 1 cut(s) 151
MaeII ACGT 2 cut(s) 111, 138
MaeIII GTNAC 1 cut(s) 150
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 119
MluCI AATT 1 cut(s) 205
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 81
NlaIII CATG 4 cut(s) 123, 131, 166, 195
NlaIV GGNNCC 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 195
NspV TTCGAA 1 cut(s) 180
PagI TCATGA 1 cut(s) 162
PciI ACATGT 1 cut(s) 191
PfeI GAWTC 2 cut(s) 62, 168
Ppu21I YACGTR 1 cut(s) 139
PscI ACATGT 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 114, 137
RsaNI GTAC 2 cut(s) 113, 136
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 1 cut(s) 81
SetI ASST 4 cut(s) 33, 114, 141, 152
SfaNI GCATC 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 180
SgeI CNNG 9 cut(s) 26, 44, 78, 100, 132, 140, 151, 175, 204
Sse9I AATT 1 cut(s) 205
SsiI CCGC 2 cut(s) 24, 201
TaaI ACNGT 1 cut(s) 117
TaiI ACGT 2 cut(s) 114, 141
TaqI TCGA 1 cut(s) 180
TasI AATT 1 cut(s) 205
TfiI GAWTC 2 cut(s) 62, 168
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TspDTI ATGAA 2 cut(s) 116, 151
XapI RAATTY 1 cut(s) 205
XceI RCATGY 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.