Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0024821

Physical Location & Seq

Genomic Coordinates Forward (+)

18685647 .. 18686786

Gene Structure 1140 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0200200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTACCTTCACTGACCGATTGGTGGCTGAGAGAATATTGGAAGAAGACCCACTTCATATTTGGCAAAAGTATTGATGTGAATCCCTCAAAACCAAGACATGATAGGAACCAAAATAACCTTGGAGATCAAGATGCTCAATGTCAAGGATCCTATCTCCCCAAACAGATTGTTGTGGGAGGTTTACCAGACCATCTGACAGAAAAAGACTTCATCAACTACTTTGCTAAATTTGGTGCAATTGATGATGGGGCCATTATGTATGACAATGAAACCAACACACCGAGAGGCTTTAGATTCATCACTTTTGAATCAGATGAGGCAGTAAAAGATGTCTTGCAAACAAGTTTTCATGAACTGAAAAATAAGATGGTTGAAGTCCAAATAAGCACTCATCCTCGAGTTAGGAATTACAAACAATGGGAGAACTGGTATGACTGTGAGCGAGTGTGGATGATCTTGCTTTTGAGTTTGATCGCCTTTTTTGTGATGATTGTGGAGCTGCTAATGGCTTTGAGCACTATGTTGGTATATATACCTCCCAGGCACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006497 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008104 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0019538 GO:0019898 GO:0022411 GO:0022607 GO:0032266 GO:0033036 GO:0034045 GO:0034497 GO:0034613 GO:0034645 GO:0035091 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044804 GO:0051179 GO:0051641 GO:0061726 GO:0061919 GO:0070727 GO:0070925 GO:0071704 GO:0071840 GO:0080025 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901981 GO:1902936 GO:1903008 GO:1905037

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

21.72

Weight (kDa)

6.06

Isoelectric Point (pI)

29.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	56 - 128	1.1e-06	RNA recognition motif
RRM_1	PF00076	57 - 122	1.4e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024821)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0117061
rosa_rugosa	Rorug02G0200200
rosa_samantha	Rh7BG041800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	144, 157
AcsI	RAATTY	1 cut(s)	230
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	311, 377
AjnI	CCWGG	1 cut(s)	542
AluBI	AGCT	1 cut(s)	502
AluI	AGCT	1 cut(s)	502
Alw21I	GWGCWC	1 cut(s)	521
AlwI	GGATC	2 cut(s)	144, 157
Ama87I	CYCGRG	1 cut(s)	399
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	252
AvaI	CYCGRG	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	3 cut(s)	201, 242, 364
BciT130I	CCWGG	1 cut(s)	544
BisI	GCNGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	504
Bme1390I	CCNGG	1 cut(s)	544
BmeT110I	CYCGRG	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	3 cut(s)	110, 151, 253
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	1 cut(s)	53
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	121, 542
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	434
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	2 cut(s)	121, 542
BseGI	GGATG	2 cut(s)	394, 459
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	434
BseXI	GCAGC	1 cut(s)	489
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	521
BsiHKCI	CYCGRG	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	24
BsnI	GGCC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	4 cut(s)	127, 149, 456, 474
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	110, 151, 253
BspPI	GGATC	2 cut(s)	144, 157
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	121, 542
BssMI	GATC	4 cut(s)	127, 149, 456, 474
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	1 cut(s)	440
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	394, 459
BstKTI	GATC	4 cut(s)	130, 152, 459, 477
BstMBI	GATC	4 cut(s)	127, 149, 456, 474
BstNI	CCWGG	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	489
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	394, 459
BtsIMutI	CAGTG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	252
CviAII	CATG	2 cut(s)	101, 353
CviJI	RGCY	5 cut(s)	28, 254, 291, 502, 512
CviKI_1	RGCY	5 cut(s)	28, 254, 291, 502, 512
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	4 cut(s)	129, 151, 458, 476
DpnII	GATC	4 cut(s)	127, 149, 456, 474
Eco130I	CCWWGG	1 cut(s)	121
Eco88I	CYCGRG	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	104, 356
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	2 cut(s)	100, 352
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	2 cut(s)	381, 466
Fsp4HI	GCNGC	1 cut(s)	503
GluI	GCNGC	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	254
Hin1II	CATG	2 cut(s)	104, 356
HinfI	GANTC	3 cut(s)	82, 297, 311
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	2 cut(s)	198, 316
Hpy188III	TCNNGA	2 cut(s)	131, 353
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	2 cut(s)	239, 340
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	104, 356
Kzo9I	GATC	4 cut(s)	127, 149, 456, 474
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	3 cut(s)	201, 415, 529
Lsp1109I	GCAGC	1 cut(s)	489
LweI	GCATC	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	4 cut(s)	129, 151, 458, 476
MboI	GATC	4 cut(s)	127, 149, 456, 474
MboII	GAAGA	2 cut(s)	55, 58
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	4 cut(s)	230, 240, 409, 550
MnlI	CCTC	6 cut(s)	97, 173, 281, 313, 408, 549
MseI	TTAA	1 cut(s)	553
MspR9I	CCNGG	1 cut(s)	544
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	544
NdeII	GATC	4 cut(s)	127, 149, 456, 474
NlaIII	CATG	2 cut(s)	104, 356
NlaIV	GGNNCC	3 cut(s)	110, 151, 253
PaeR7I	CTCGAG	1 cut(s)	399
PagI	TCATGA	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	82, 297, 311
PkrI	GCNGC	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	3 cut(s)	110, 151, 253
PspPI	GGNCC	1 cut(s)	252
PspXI	VCTCGAGB	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	553
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	4 cut(s)	127, 149, 456, 474
Sau96I	GGNCC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	521
SetI	ASST	5 cut(s)	10, 123, 184, 504, 541
SfaNI	GCATC	1 cut(s)	124
Sfr274I	CTCGAG	1 cut(s)	399
SlaI	CTCGAG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	4 cut(s)	230, 240, 409, 550
SspI	AATATT	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	1 cut(s)	400
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	4 cut(s)	230, 240, 409, 550
TfiI	GAWTC	3 cut(s)	82, 297, 311
Tru1I	TTAA	1 cut(s)	553
Tru9I	TTAA	1 cut(s)	553
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	1 cut(s)	502
TspDTI	ATGAA	6 cut(s)	46, 202, 285, 289, 341, 369
TspRI	CASTG	1 cut(s)	18
XapI	RAATTY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	2 cut(s)	59, 119
XhoI	CTCGAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.