Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0032295

Physical Location & Seq

Genomic Coordinates Reverse (-)

31562770 .. 31564348

Gene Structure 1579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0288500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGAGATCTGGTAGAGGCGGCGCCGATTTTCGGGAATTGCTTTGGAGATCCTCAGGAGGTCCGATTTCGTTTGTAGATCGACGCATGATAGATTTCCGATTCATGCTTTTCACCATTCGGCAAATTTTTTCGCGATTGGCTGGTGAGCTAACTGCTGCCAAAATTAATAACCTGATGTACATTGTGGGAAATCCCCGTCAGTTCAAGATCCCTGACTGGTTTCTCAACACAAAGAAGGATTACAATGATGGAATCACCGTGGTGTTCGACACTACTAGGGCCTTTGTGTGCTTGGACAACACAGTAAGACCATTGGCCACAGGGGGAAGACTGTTGGAGTGTCCAAGAAGCGTTGAAGAACATATTTTGGCTGTTTGGGAGCATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008356 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0036211 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0071944 GO:0090406 GO:0120025 GO:0140096 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

130

Amino Acids

15.03

Weight (kDa)

9.18

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	48 - 87	6.4e-06	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032295)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug02G0288500
rosa_samantha	Rh4DG041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccII	CGCG	1 cut(s)	136
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	2 cut(s)	45, 205
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	126
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	208, 359
AleI	CACNNNNGTG	1 cut(s)	263
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
AlwI	GGATC	2 cut(s)	45, 205
AoxI	GGCC	2 cut(s)	282, 318
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	126
AseI	ATTAAT	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	62, 282
AsuHPI	GGTGA	3 cut(s)	106, 158, 250
AvaII	GGWCC	1 cut(s)	62
AxyI	CCTNAGG	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	27
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	2 cut(s)	22, 159
BlsI	GCNGC	2 cut(s)	23, 160
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	62, 282
BmiI	GGNNCC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	337
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	261
BsaXI	ACNNNNNCTCC	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	224
Bse21I	CCTNAGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	284, 320
BshNI	GGYRCC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	33
BsnI	GGCC	2 cut(s)	284, 320
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	8, 50, 79, 210
Bsp68I	TCGCGA	1 cut(s)	136
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	2 cut(s)	284, 320
BspCNI	CTCAG	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	45, 205
BspT107I	GGYRCC	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	4 cut(s)	8, 50, 79, 210
BssNI	GRCGYC	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	262, 307, 336
BstACI	GRCGYC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	55
BstDSI	CCRYGG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	4 cut(s)	11, 53, 82, 213
BstMBI	GATC	4 cut(s)	8, 50, 79, 210
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	3 cut(s)	8, 50, 210
BstYI	RGATCY	3 cut(s)	8, 50, 210
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	284, 320
BtgI	CCRYGG	1 cut(s)	261
BtuMI	TCGCGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	62, 282
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	88, 106
CviJI	RGCY	5 cut(s)	143, 151, 284, 320, 374
CviKI_1	RGCY	5 cut(s)	143, 151, 284, 320, 374
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	55
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	4 cut(s)	10, 52, 81, 212
DpnII	GATC	4 cut(s)	8, 50, 79, 210
EaeI	YGGCCR	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	62
Eco81I	CCTNAGG	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	282
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
FaeI	CATG	2 cut(s)	91, 109
FaiI	YATR	5 cut(s)	89, 107, 366, 387, 389
FatI	CATG	2 cut(s)	87, 105
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	22, 159
Fsp4HI	GCNGC	2 cut(s)	22, 159
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	2 cut(s)	22, 159
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	284, 320
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	91, 109
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	102, 255
HphI	GGTGA	3 cut(s)	106, 158, 250
Hpy188I	TCNGA	2 cut(s)	66, 101
Hpy188III	TCNNGA	4 cut(s)	35, 57, 135, 208
Hpy99I	CGWCG	1 cut(s)	87
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	3 cut(s)	262, 307, 336
HpyF3I	CTNAG	1 cut(s)	55
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	91, 109
HspAI	GCGC	1 cut(s)	24
KasI	GGCGCC	1 cut(s)	23
Kzo9I	GATC	4 cut(s)	8, 50, 79, 210
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	6 cut(s)	42, 129, 188, 205, 228, 309
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	279
MalI	GATC	4 cut(s)	10, 52, 81, 212
MboI	GATC	4 cut(s)	8, 50, 79, 210
MboII	GAAGA	2 cut(s)	342, 371
MflI	RGATCY	3 cut(s)	8, 50, 210
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	3 cut(s)	38, 126, 165
MluNI	TGGCCA	1 cut(s)	320
Mly113I	GGCGCC	1 cut(s)	24
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	3 cut(s)	11, 53, 64
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	320
MvnI	CGCG	1 cut(s)	136
NarI	GGCGCC	1 cut(s)	24
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	4 cut(s)	8, 50, 79, 210
NlaIII	CATG	2 cut(s)	91, 109
NlaIV	GGNNCC	1 cut(s)	25
NruI	TCGCGA	1 cut(s)	136
OliI	CACNNNNGTG	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	102, 255
PkrI	GCNGC	2 cut(s)	23, 160
PluTI	GGCGCC	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	2 cut(s)	62, 282
PsuI	RGATCY	3 cut(s)	8, 50, 210
RruI	TCGCGA	1 cut(s)	136
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	22, 159
Sau3AI	GATC	4 cut(s)	8, 50, 79, 210
Sau96I	GGNCC	2 cut(s)	62, 282
SetI	ASST	3 cut(s)	64, 153, 177
SfoI	GGCGCC	1 cut(s)	25
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	38, 126, 165
SsiI	CCGC	1 cut(s)	21
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	279
TaaI	ACNGT	3 cut(s)	262, 307, 336
TaqI	TCGA	2 cut(s)	82, 270
TasI	AATT	3 cut(s)	38, 126, 165
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	2 cut(s)	102, 255
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	62
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	1 cut(s)	126
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.