Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0032295

Physical Location & Seq

Genomic Coordinates Reverse (-)

6617785 .. 6619341

Gene Structure 1557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG041000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAAAGGAATTGCGAAAGGCTTGGTCTACCTGCATGAGTTTAGCCCCAAAAAGTATGTCCATGGAGACTTGAAGCCGAGTAACATACTTCTTGGACATAACATTGAGCCACACATTTCTGATTTTGGACTCGGACGCCTTGCTAATATAACACAAGGTACCCCAACACTGGAATCCAACCGAATGGCCACCATAGACAAACCACAAGAAAGGCACCAAAAGAGCGCATCGATTGAATCTGCTATAGTTTGTTCATCTAGTAATTTGGGATCTTGTTATAAAGCTCCAGAAGCTCTGAAGGTGGTGAAACCATCACAAAAATGGGATGTCTATTCCTATGGGGTAATCTTACTTGAAATGATTACCGGAAGATTGCCCATAGTCCAAGTGGGTTCCTCAGAAATGGACCTTGTTCATTGGATTCAGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008356 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022402 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0036211 GO:0042995 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0071944 GO:0090406 GO:0120025 GO:0140096 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

143

Amino Acids

15.8

Weight (kDa)

8.54

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 130	2.6e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 49	3.8e-07	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	86 - 134	2.9e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032295)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug02G0288500
rosa_samantha	Rh4DG041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	39
Acc65I	GGTACC	1 cut(s)	158
AccB1I	GGYRCC	2 cut(s)	158, 213
AccI	GTMKAC	1 cut(s)	27
AclWI	GGATC	1 cut(s)	277
AcoI	YGGCCR	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	136
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	73, 236, 356
AluBI	AGCT	3 cut(s)	284, 293, 427
AluI	AGCT	3 cut(s)	284, 293, 427
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	277
AoxI	GGCC	1 cut(s)	186
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
Asp718I	GGTACC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	316
AvaII	GGWCC	1 cut(s)	406
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	158, 213
BccI	CCATC	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	2 cut(s)	258, 430
BfmI	CTRYAG	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	3 cut(s)	160, 215, 394
BmsI	GCATC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	61
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	2 cut(s)	158, 213
BshVI	ATCGAT	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	269
Bsp19I	CCATGG	1 cut(s)	61
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	410
BspDI	ATCGAT	1 cut(s)	230
BspLI	GGNNCC	3 cut(s)	160, 215, 394
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	277
BspT107I	GGYRCC	2 cut(s)	158, 213
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	61
BssMI	GATC	1 cut(s)	269
BssNI	GRCGYC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	397
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	272
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSFI	CTRYAG	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	269
Bsu15I	ATCGAT	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	188
BsuTUI	ATCGAT	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	406
ClaI	ATCGAT	1 cut(s)	230
CseI	GACGC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	2 cut(s)	35, 62
CviJI	RGCY	8 cut(s)	21, 45, 76, 109, 188, 284, 293, 427
CviKI_1	RGCY	8 cut(s)	21, 45, 76, 109, 188, 284, 293, 427
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	2 cut(s)	38, 65
FatI	CATG	2 cut(s)	34, 61
FblI	GTMKAC	1 cut(s)	27
FokI	GGATG	1 cut(s)	338
FspBI	CTAG	2 cut(s)	258, 430
GlaI	GCGC	1 cut(s)	226
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	38, 65
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	4 cut(s)	129, 173, 236, 421
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	121, 134, 297, 400
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	292
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	397
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	2 cut(s)	38, 65
HspAI	GCGC	1 cut(s)	225
KpnI	GGTACC	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	269
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	4 cut(s)	44, 155, 300, 379
LweI	GCATC	1 cut(s)	236
MaeI	CTAG	2 cut(s)	258, 430
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	1 cut(s)	271
MboI	GATC	1 cut(s)	269
MboII	GAAGA	1 cut(s)	381
MflI	RGATCY	1 cut(s)	269
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	2 cut(s)	9, 262
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	1 cut(s)	406
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	319
Msp20I	TGGCCA	1 cut(s)	188
MspI	CCGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	61
NdeII	GATC	1 cut(s)	269
NlaIII	CATG	2 cut(s)	38, 65
NlaIV	GGNNCC	3 cut(s)	160, 215, 394
NmeAIII	GCCGAG	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	173, 236, 421
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PsiI	TTATAA	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	160, 215, 394
PspPI	GGNCC	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	319
Sau3AI	GATC	1 cut(s)	269
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	1 cut(s)	123
SetI	ASST	7 cut(s)	33, 160, 286, 295, 303, 411, 429
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	319
Sse9I	AATT	2 cut(s)	9, 262
SspMI	CTAG	2 cut(s)	258, 430
StyI	CCWWGG	1 cut(s)	61
TaqI	TCGA	1 cut(s)	230
TasI	AATT	2 cut(s)	9, 262
TfiI	GAWTC	3 cut(s)	173, 236, 421
TscAI	CASTG	1 cut(s)	174
TspDTI	ATGAA	3 cut(s)	17, 243, 404
TspRI	CASTG	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	2 cut(s)	318, 385
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	2 cut(s)	258, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.