Rorug02G0350500

F-box LRR-repeat protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0032301
Physical Location & Seq
Forward (+)
44052585 .. 44053387
803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0350500.1

Sequence Viewer

Length: 474 bp
ATGGTCAATCTGTCGGAAGTGGCCGTATTTGCTGCCCGTTTGCCTCGACTAAGAGCAATTGTGCTGCATAGTCTGATATTAGAAGATAATGGAGCTGGTGAGCGAGTCACTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTTTATGGAAGTTCAACTGCAGAAGTTATGTTACAGTCGATCTGCAAAGGAAGGTGAACCCTTCTGGGACAGTCCATGGGCACTGGAAGACCTGGTGGCATATCGAGTGCAGTGCCATGAGTACTGCTTATCTGGGTTACTCTTTTGACATACATGGTGGAGGGATGGACCTTCTGTTTCCCCCACATGAGAATGAAATTGCTCAGAGTTGTGCTGCTTGTAAACAAAGTTATATAAGCTACTGGATACACAATGGTTTTGTCACTATAGACTCTGAACAAATGTTCAAATCGCTATGGAACTTTTTTACAATTCGACAGGTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

157

Amino Acids

17.97

Weight (kDa)

8.37

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 27 - 156 4.8e-39 tRNA synthetases class I (C) catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032301)

Species Orthologous Gene IDs
rosa_rugosa Rorug02G0350500
rosa_samantha Rh2AG398200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 21
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 3 cut(s) 120, 160, 433
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 2 cut(s) 95, 384
AluI AGCT 2 cut(s) 95, 384
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 3 cut(s) 32, 64, 359
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 110, 211
AvaII GGWCC 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 228
BarI GAAGNNNNNNTAC 2 cut(s) 160, 192
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 3 cut(s) 19, 51, 346
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 8
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 238
BciVI GTATCC 1 cut(s) 384
BfmI CTRYAG 2 cut(s) 163, 411
BfuI GTATCC 1 cut(s) 384
BisI GCNGC 3 cut(s) 33, 65, 360
BlsI GCNGC 3 cut(s) 34, 66, 361
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 233, 392
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 233, 392
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 3 cut(s) 19, 51, 346
BsgI GTGCAG 1 cut(s) 274
BshFI GGCC 1 cut(s) 23
BslFI GGGAC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 184
Bsp19I CCATGG 1 cut(s) 220
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 167
BsrI ACTGG 2 cut(s) 233, 392
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 3 cut(s) 112, 181, 217
BstDEI CTNAG 2 cut(s) 50, 348
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 315
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 29, 143
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 2 cut(s) 163, 411
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 3 cut(s) 19, 51, 346
BstV2I GAAGAC 1 cut(s) 239
BsuI GTATCC 1 cut(s) 384
BsuRI GGCC 1 cut(s) 23
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 315
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 3 cut(s) 108, 226, 262
Cfr13I GGNCC 1 cut(s) 313
CsiI ACCWGGT 1 cut(s) 236
Csp6I GTAC 1 cut(s) 267
CviAII CATG 4 cut(s) 221, 262, 299, 332
CviJI RGCY 3 cut(s) 23, 95, 384
CviKI_1 RGCY 3 cut(s) 23, 95, 384
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 2 cut(s) 50, 348
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 4 cut(s) 224, 265, 302, 335
FaqI GGGAC 1 cut(s) 226
FatI CATG 4 cut(s) 220, 261, 298, 331
Fnu4HI GCNGC 3 cut(s) 33, 65, 360
FokI GGATG 1 cut(s) 322
Fsp4HI GCNGC 3 cut(s) 33, 65, 360
GluI GCNGC 3 cut(s) 33, 65, 360
HaeIII GGCC 1 cut(s) 23
Hin1II CATG 4 cut(s) 224, 265, 302, 335
HinfI GANTC 3 cut(s) 105, 116, 416
HphI GGTGA 2 cut(s) 110, 211
Hpy166II GTNNAC 2 cut(s) 202, 368
Hpy188I TCNGA 4 cut(s) 16, 75, 351, 421
Hpy8I GTNNAC 2 cut(s) 202, 368
HpyAV CCTTC 3 cut(s) 190, 216, 326
HpyCH4III ACNGT 3 cut(s) 112, 181, 217
HpyCH4V TGCA 4 cut(s) 67, 165, 190, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 143
HpyF3I CTNAG 2 cut(s) 50, 348
Hsp92II CATG 4 cut(s) 224, 265, 302, 335
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 9 cut(s) 81, 147, 195, 214, 223, 250, 263, 373, 449
Lsp1109I GCAGC 3 cut(s) 19, 51, 346
MabI ACCWGGT 1 cut(s) 236
MaeIII GTNAC 4 cut(s) 106, 175, 281, 406
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 3 cut(s) 95, 136, 244
MfeI CAATTG 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 3 cut(s) 57, 342, 456
MlyI GAGTC 2 cut(s) 114, 410
MnlI CCTC 2 cut(s) 54, 299
MslI CAYNNNNRTG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 238
MunI CAATTG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 29, 143
NcoI CCATGG 1 cut(s) 220
NdeII GATC 1 cut(s) 184
NlaIII CATG 4 cut(s) 224, 265, 302, 335
NmuCI GTSAC 2 cut(s) 106, 406
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 3 cut(s) 34, 66, 361
PleI GAGTC 2 cut(s) 113, 410
PpsI GAGTC 2 cut(s) 113, 410
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspPI GGNCC 1 cut(s) 313
PstI CTGCAG 1 cut(s) 167
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 336
SatI GCNGC 3 cut(s) 33, 65, 360
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 313
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 2 cut(s) 114, 410
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 1 cut(s) 228
SetI ASST 6 cut(s) 97, 201, 239, 318, 386, 468
SexAI ACCWGGT 1 cut(s) 236
SfcI CTRYAG 2 cut(s) 163, 411
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 3 cut(s) 57, 342, 456
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 3 cut(s) 112, 181, 217
TaqI TCGA 4 cut(s) 46, 183, 249, 460
TasI AATT 3 cut(s) 57, 342, 456
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 1 cut(s) 116
TscAI CASTG 3 cut(s) 115, 233, 262
TseFI GTSAC 2 cut(s) 106, 406
TseI GCWGC 3 cut(s) 32, 64, 359
Tsp45I GTSAC 2 cut(s) 106, 406
TspDTI ATGAA 1 cut(s) 354
TspRI CASTG 3 cut(s) 115, 233, 262
VpaK11BI GGWCC 1 cut(s) 313
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.