Rh2AG398200

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0032301
Physical Location & Seq
Reverse (-)
59444236 .. 59445881
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG398200.1

Sequence Viewer

Length: 597 bp
ATGGATTACCTTTCTGAGCTACCTGACGAGGTTCTTGCTATAATTATCAACCGGCTCACCGACGGCCGTGACCGAGATGCCCTGTCTGAGGTGTCAAAGCAACTATTGAAGGCTAGGCGCTGGTGCCGTTCCTCAATTCGCTGTTATGGTGATCCTCTGAACCGGAGAGTGCTCTCACAGTGTCCAAATGTAGTGAAGTTTGCATCTTCTGGTGATCTCTCAGATGAAGACTTGAGCTTCTTGGCCCAAGCGTGTCCAAAGTTAGAGATCTTGGATCTCAGGATCTCTATCTCTGCTGCAAATGCAATGGTACCACGAAAACGATGTTCTTTGTTGAATGGGATTGTTGCTGTGGCACAGGGCTGCCCAAAATTGCTTCAAGTATATCTTGATCCAAGATTGGATGATGGATTTGCTCGGGTAATGAATGCGCTACCCCCCGCCTCACTCATTTTCAGCCTGGAGGCAAGATTCGAGATGCAGATATTCAAGTCCTGTCACATATTAGTTCTCTTGAGCATCTGGATCTTGGGCGCTGCTTTGATGTCACAGATACGGCACTGTACTACGTCAATGGTATGGCTCTGCACTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

198

Amino Acids

22.14

Weight (kDa)

8.4

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 6 - 44 8.1e-07 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032301)

Species Orthologous Gene IDs
rosa_rugosa Rorug02G0350500
rosa_samantha Rh2AG398200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 310
AccB1I GGYRCC 2 cut(s) 123, 310
AciI CCGC 1 cut(s) 441
AclWI GGATC 5 cut(s) 146, 282, 290, 386, 533
AcoI YGGCCR 1 cut(s) 64
AfaI GTAC 2 cut(s) 312, 565
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 4 cut(s) 109, 337, 380, 490
AjnI CCWGG 1 cut(s) 459
AluBI AGCT 2 cut(s) 19, 237
AluI AGCT 2 cut(s) 19, 237
Alw21I GWGCWC 1 cut(s) 174
AlwI GGATC 5 cut(s) 146, 282, 290, 386, 533
Ama87I CYCGRG 1 cut(s) 417
AoxI GGCC 2 cut(s) 64, 243
ApeKI GCWGC 3 cut(s) 296, 363, 536
Asp718I GGTACC 1 cut(s) 310
AspLEI GCGC 3 cut(s) 120, 433, 536
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 3 cut(s) 49, 161, 224
AvaI CYCGRG 1 cut(s) 417
BanI GGYRCC 2 cut(s) 123, 310
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 3 cut(s) 283, 350, 523
BccI CCATC 1 cut(s) 401
BceAI ACGGC 4 cut(s) 51, 79, 111, 572
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BciT130I CCWGG 1 cut(s) 461
BfaI CTAG 1 cut(s) 114
BfoI RGCGCY 2 cut(s) 121, 537
BglII AGATCT 1 cut(s) 267
BisI GCNGC 3 cut(s) 297, 364, 537
BlsI GCNGC 3 cut(s) 298, 365, 538
Bme1390I CCNGG 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 125, 312
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 4 cut(s) 67, 212, 468, 528
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 482
BpuEI CTTGAG 2 cut(s) 253, 535
BsaBI GATNNNNATC 1 cut(s) 287
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse118I RCCGGY 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 287
BseBI CCWGG 1 cut(s) 461
BseGI GGATG 1 cut(s) 409
BseJI GATNNNNATC 1 cut(s) 287
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 4 cut(s) 6, 78, 234, 292
BseX3I CGGCCG 1 cut(s) 64
BseXI GCAGC 3 cut(s) 283, 350, 523
BsgI GTGCAG 1 cut(s) 571
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 66, 245
BshNI GGYRCC 2 cut(s) 123, 310
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 417
BsiSI CCGG 2 cut(s) 52, 163
BslI CCNNNNNNNGG 1 cut(s) 88
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 2 cut(s) 66, 245
BsoBI CYCGRG 1 cut(s) 417
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 7 cut(s) 151, 214, 267, 274, 282, 391, 525
BspACI CCGC 1 cut(s) 441
BspANI GGCC 2 cut(s) 66, 245
BspCNI CTCAG 4 cut(s) 7, 79, 233, 291
BspLI GGNNCC 2 cut(s) 125, 312
BspPI GGATC 5 cut(s) 146, 282, 290, 386, 533
BspT107I GGYRCC 2 cut(s) 123, 310
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 51
BssMI GATC 7 cut(s) 151, 214, 267, 274, 282, 391, 525
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 2 cut(s) 180, 563
BstDEI CTNAG 4 cut(s) 15, 87, 220, 278
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 409
BstH2I RGCGCY 2 cut(s) 121, 537
BstHHI GCGC 3 cut(s) 120, 433, 536
BstKTI GATC 7 cut(s) 154, 217, 270, 277, 285, 394, 528
BstMBI GATC 7 cut(s) 151, 214, 267, 274, 282, 391, 525
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
BstV1I GCAGC 3 cut(s) 283, 350, 523
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 4 cut(s) 267, 274, 282, 525
BstYI RGATCY 4 cut(s) 267, 274, 282, 525
BstZI CGGCCG 1 cut(s) 64
BsuRI GGCC 2 cut(s) 66, 245
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 185, 559
CfoI GCGC 3 cut(s) 120, 433, 536
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 2 cut(s) 311, 564
CviJI RGCY 9 cut(s) 19, 55, 66, 113, 237, 245, 363, 459, 583
CviKI_1 RGCY 9 cut(s) 19, 55, 66, 113, 237, 245, 363, 459, 583
CviQI GTAC 2 cut(s) 311, 564
DdeI CTNAG 4 cut(s) 15, 87, 220, 278
DpnI GATC 7 cut(s) 153, 216, 269, 276, 284, 393, 527
DpnII GATC 7 cut(s) 151, 214, 267, 274, 282, 391, 525
EaeI YGGCCR 1 cut(s) 64
EagI CGGCCG 1 cut(s) 64
EclXI CGGCCG 1 cut(s) 64
Eco52I CGGCCG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 417
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 459
FaiI YATR 5 cut(s) 41, 147, 385, 503, 580
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FauI CCCGC 1 cut(s) 448
Fnu4HI GCNGC 3 cut(s) 297, 364, 537
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 3 cut(s) 297, 364, 537
FspBI CTAG 1 cut(s) 114
GlaI GCGC 3 cut(s) 119, 432, 535
GluI GCNGC 3 cut(s) 297, 364, 537
GsuI CTGGAG 1 cut(s) 482
HaeII RGCGCY 2 cut(s) 121, 537
HaeIII GGCC 2 cut(s) 66, 245
HapII CCGG 2 cut(s) 52, 163
HhaI GCGC 3 cut(s) 120, 433, 536
Hin6I GCGC 3 cut(s) 118, 431, 534
HinP1I GCGC 3 cut(s) 118, 431, 534
HinfI GANTC 1 cut(s) 471
HpaII CCGG 2 cut(s) 52, 163
HphI GGTGA 3 cut(s) 49, 161, 224
Hpy188I TCNGA 4 cut(s) 16, 88, 159, 223
Hpy188III TCNNGA 5 cut(s) 280, 389, 475, 514, 523
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 180, 563
HpyCH4IV ACGT 1 cut(s) 569
HpyCH4V TGCA 5 cut(s) 203, 299, 305, 481, 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 4 cut(s) 15, 87, 220, 278
HpySE526I ACGT 1 cut(s) 569
HspAI GCGC 3 cut(s) 118, 431, 534
KpnI GGTACC 1 cut(s) 314
Kzo9I GATC 7 cut(s) 151, 214, 267, 274, 282, 391, 525
Lsp1109I GCAGC 3 cut(s) 283, 350, 523
LweI GCATC 4 cut(s) 67, 212, 468, 528
MaeI CTAG 1 cut(s) 114
MaeII ACGT 1 cut(s) 569
MaeIII GTNAC 3 cut(s) 68, 497, 546
MalI GATC 7 cut(s) 153, 216, 269, 276, 284, 393, 527
MboI GATC 7 cut(s) 151, 214, 267, 274, 282, 391, 525
MboII GAAGA 2 cut(s) 198, 239
MflI RGATCY 4 cut(s) 267, 274, 282, 525
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 3 cut(s) 42, 135, 371
MnlI CCTC 6 cut(s) 22, 82, 142, 165, 454, 457
MspI CCGG 2 cut(s) 52, 163
MspR9I CCNGG 1 cut(s) 461
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 1 cut(s) 302
NdeII GATC 7 cut(s) 151, 214, 267, 274, 282, 391, 525
NlaIV GGNNCC 2 cut(s) 125, 312
NmuCI GTSAC 3 cut(s) 68, 497, 546
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 1 cut(s) 471
PkrI GCNGC 3 cut(s) 298, 365, 538
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 125, 312
PspPI GGNCC 1 cut(s) 244
PsuI RGATCY 4 cut(s) 267, 274, 282, 525
RsaI GTAC 2 cut(s) 312, 565
RsaNI GTAC 2 cut(s) 311, 564
SatI GCNGC 3 cut(s) 297, 364, 537
Sau3AI GATC 7 cut(s) 151, 214, 267, 274, 282, 391, 525
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 1 cut(s) 174
SetI ASST 7 cut(s) 12, 21, 25, 33, 93, 239, 572
SfaNI GCATC 4 cut(s) 67, 212, 468, 528
SmlI CTYRAG 2 cut(s) 232, 514
SmoI CTYRAG 2 cut(s) 232, 514
Sse9I AATT 3 cut(s) 42, 135, 371
SsiI CCGC 1 cut(s) 441
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 459
TaaI ACNGT 2 cut(s) 180, 563
TaiI ACGT 1 cut(s) 572
TaqI TCGA 1 cut(s) 474
TaqII GACCGA 1 cut(s) 87
TasI AATT 3 cut(s) 42, 135, 371
TatI WGTACW 1 cut(s) 563
TfiI GAWTC 1 cut(s) 471
TscAI CASTG 2 cut(s) 185, 566
TseFI GTSAC 3 cut(s) 68, 497, 546
TseI GCWGC 3 cut(s) 296, 363, 536
Tsp45I GTSAC 3 cut(s) 68, 497, 546
TspDTI ATGAA 2 cut(s) 240, 440
TspRI CASTG 2 cut(s) 185, 566
XagI CCTNNNNNAGG 1 cut(s) 86
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.