Rorug02G0470600

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0024494
Physical Location & Seq
Forward (+)
60162720 .. 60167638
4919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0470600.1

Sequence Viewer

Length: 1218 bp
ATGGCCAACGTCTCCCTCCCCGTCAAAACCCTCACCTTCTTGTCTCCACCAAAAATAGAGAAAAAAAAACCCAAACCCTCACCCCTGGCTTCGATTAACCATGCAAAAGCCAAGCCGTCTTCGTCCCACAGTCCCACTCGATCTCAGCTCGACCATGCTTTCGTCAGCCTCATTCTCTGCAAAGCCGTCTCCAAGCTCGGTGAGGCTCGTTGTCCGCGCATTTCTGATTCTGATTGGTACGCCTATTTCTCTTCCCCTCTCAGAGCTTCGATTTTTCTTCGAACCCTAGCTGTTTATGTTTTCAATCTTCCATTTCTTGTTAGAGTTGGGATTGAGATTCTGCTTCGTACATTTAAGCTGTCTCACAGAGAGTGCTACTTTTTGCTGCTCGATCTTAAGTGCAATCTGCAAGAAGGGATGGAGGGAAATCCTTCTGCTAAAACCATGAAGAATGTTTCAAGAGGCATGGCTGTTCTTACAGTTTTGTTTACCATGGGCTTTCCAAAGGACATTCCACAGGATGAGAACTCCAAAGATCAGTTTCTAATTCAATCCAAGTCAGGGGTACCCAGGCTTGTGGTAGTGGTCGGAGTTTATCAGTTTGGAACCTTCCTGCTTCTGAATGCATTTAAAGGACTTCAACTCGTGCATATGTACAGGATGCATTGTTGCTTTTCTCCTTCCCAGATATTAGTAGTTGGAGCAGAGCCTCTACTTAGCCGTTTTGAGATAAATGAGGCGATTCTTTCACAAATGCAATGTGCTCCTCCCCAGTCAGCCTTTTCTGTCTCATTACATACATCTGGGGTTACAACAATAGGAGGTTATGGAGGAGTTGTGGATGTTATTTCCCAGTTCGGAAGCCATTTGTGCACGGGTGTTCTTCTCTATGGACCCTCGGGAATAGAAAAGACATTGCTAGCCAGAGCAATTGCAAGCAACATAGATGCTAACTTTCTAAAGGTTAATTATTCATTTATGGCACTTGATATGCGGTCCAGAAGAGCAAAGAGATTATTAGAAGAGCATGATGGTGAGAATTGTAAAGGTGAAGAAGAAGTGCAAGCAATGGACAATTGTCACAGACTTTGTCCGCTGATAGCTGAAACTGGAAATATTGGTTTTGCTATGCAAGCAATGCATCAGAGTAAATCAATGAAATCAAGAAATGATGAACCACTTATGGGAAATTTTGTATCAAACTGCTCAAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_1 NB-ARC

Protein Analysis

405

Amino Acids

44.77

Weight (kDa)

9.14

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 294 - 365 4.1e-06 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024494)

Species Orthologous Gene IDs
malus_domestica MD11G1135300.v1.1
rosa_rugosa Rorug02G0470600
rosa_samantha Rh2CG520000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 565
AccB1I GGYRCC 1 cut(s) 565
AccII CGCG 1 cut(s) 217
AciI CCGC 3 cut(s) 215, 994, 1094
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 1189
AfaI GTAC 4 cut(s) 239, 349, 567, 656
AfiI CCNNNNNNNGG 2 cut(s) 561, 1184
AflII CTTAAG 1 cut(s) 395
AgsI TTSAA 4 cut(s) 304, 459, 551, 641
AjnI CCWGG 2 cut(s) 84, 569
AluBI AGCT 6 cut(s) 148, 196, 266, 290, 358, 1103
AluI AGCT 6 cut(s) 148, 196, 266, 290, 358, 1103
Alw21I GWGCWC 2 cut(s) 766, 875
Alw26I GTCTC 5 cut(s) 16, 48, 193, 366, 793
Alw44I GTGCAC 1 cut(s) 871
Ama87I CYCGRG 1 cut(s) 898
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 871
ApeKI GCWGC 1 cut(s) 385
ApoI RAATTY 1 cut(s) 1189
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
Asp700I GAANNNNTTC 1 cut(s) 430
Asp718I GGTACC 1 cut(s) 565
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 893, 996
AsuHPI GGTGA 5 cut(s) 25, 72, 212, 1046, 1061
AsuII TTCGAA 1 cut(s) 280
AsuNHI GCTAGC 1 cut(s) 919
AvaI CYCGRG 1 cut(s) 898
AvaII GGWCC 2 cut(s) 893, 996
BaeGI GKGCMC 1 cut(s) 875
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 565
BauI CACGAG 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 2 cut(s) 766, 875
BbvI GCAGC 1 cut(s) 372
BccI CCATC 2 cut(s) 412, 1025
BceAI ACGGC 3 cut(s) 100, 170, 705
BciT130I CCWGG 2 cut(s) 86, 571
BcoDI GTCTC 5 cut(s) 16, 48, 193, 366, 793
BfaI CTAG 2 cut(s) 287, 920
BfrI CTTAAG 1 cut(s) 395
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
Bme1390I CCNGG 2 cut(s) 86, 571
Bme18I GGWCC 2 cut(s) 893, 996
BmeT110I CYCGRG 1 cut(s) 898
BmgT120I GGNCC 2 cut(s) 893, 996
BmiI GGNNCC 3 cut(s) 567, 607, 895
BmrFI CCNGG 2 cut(s) 86, 571
BmrI ACTGGG 2 cut(s) 766, 847
BmsI GCATC 3 cut(s) 651, 937, 1150
BmtI GCTAGC 1 cut(s) 923
BmuI ACTGGG 2 cut(s) 766, 847
BoxI GACNNNNGTC 1 cut(s) 1077
BpiI GAAGAC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 280
BpuEI CTTGAG 1 cut(s) 1192
BsaJI CCNNGG 4 cut(s) 84, 492, 569, 897
BsaXI ACNNNNNCTCC 2 cut(s) 822, 852
Bsc4I CCNNNNNNNGG 2 cut(s) 561, 1184
Bse1I ACTGG 3 cut(s) 772, 853, 1114
Bse3DI GCAATG 4 cut(s) 764, 914, 1074, 1143
BseBI CCWGG 2 cut(s) 86, 571
BseDI CCNNGG 4 cut(s) 84, 492, 569, 897
BseGI GGATG 4 cut(s) 423, 526, 666, 847
BseLI CCNNNNNNNGG 2 cut(s) 561, 1184
BseMI GCAATG 4 cut(s) 764, 914, 1074, 1143
BseMII CTCAG 2 cut(s) 158, 274
BseNI ACTGG 3 cut(s) 772, 853, 1114
BseRI GAGGAG 2 cut(s) 756, 846
BseSI GKGCMC 1 cut(s) 875
BseXI GCAGC 1 cut(s) 372
Bsh1236I CGCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 565
BsiHKAI GWGCWC 2 cut(s) 766, 875
BsiHKCI CYCGRG 1 cut(s) 898
BslFI GGGAC 2 cut(s) 109, 117
BslI CCNNNNNNNGG 2 cut(s) 561, 1184
BsmAI GTCTC 5 cut(s) 16, 48, 193, 366, 793
BsmBI CGTCTC 2 cut(s) 16, 193
BsmFI GGGAC 2 cut(s) 109, 117
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 898
Bsp119I TTCGAA 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 766, 875
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 3 cut(s) 140, 391, 535
Bsp19I CCATGG 1 cut(s) 492
BspACI CCGC 3 cut(s) 215, 994, 1094
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 157, 273
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 567, 607, 895
BspOI GCTAGC 1 cut(s) 923
BspQI GCTCTTC 2 cut(s) 997, 1017
BspT104I TTCGAA 1 cut(s) 280
BspT107I GGYRCC 1 cut(s) 565
BspTI CTTAAG 1 cut(s) 395
BsrDI GCAATG 4 cut(s) 764, 914, 1074, 1143
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 3 cut(s) 772, 853, 1114
BssECI CCNNGG 4 cut(s) 84, 492, 569, 897
BssMI GATC 3 cut(s) 140, 391, 535
BssSI CACGAG 1 cut(s) 644
BssT1I CCWWGG 1 cut(s) 492
Bst2BI CACGAG 1 cut(s) 644
Bst2UI CCWGG 2 cut(s) 86, 571
Bst4CI ACNGT 2 cut(s) 131, 481
Bst6I CTCTTC 3 cut(s) 256, 997, 1017
BstAFI CTTAAG 1 cut(s) 395
BstAPI GCANNNNNTGC 1 cut(s) 1138
BstAUI TGTACA 1 cut(s) 654
BstBI TTCGAA 1 cut(s) 280
BstC8I GCNNGC 4 cut(s) 921, 937, 1065, 1134
BstDEI CTNAG 3 cut(s) 144, 260, 716
BstDSI CCRYGG 1 cut(s) 492
BstF5I GGATG 4 cut(s) 423, 526, 666, 847
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 3 cut(s) 143, 394, 538
BstMAI GTCTC 5 cut(s) 16, 48, 193, 366, 793
BstMBI GATC 3 cut(s) 140, 391, 535
BstMWI GCNNNNNNNGC 3 cut(s) 870, 1133, 1138
BstNI CCWGG 2 cut(s) 86, 571
BstPAI GACNNNNGTC 1 cut(s) 1077
BstSCI CCNGG 2 cut(s) 84, 569
BstSLI GKGCMC 1 cut(s) 875
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 1 cut(s) 372
BstV2I GAAGAC 1 cut(s) 111
BstXI CCANNNNNNTGG 1 cut(s) 577
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 492
BtsCI GGATG 4 cut(s) 423, 526, 666, 847
Cac8I GCNNGC 4 cut(s) 921, 937, 1065, 1134
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 2 cut(s) 893, 996
Csp6I GTAC 4 cut(s) 238, 348, 566, 655
CviAII CATG 6 cut(s) 101, 155, 445, 466, 493, 1028
CviQI GTAC 4 cut(s) 238, 348, 566, 655
DdeI CTNAG 3 cut(s) 144, 260, 716
DpnI GATC 3 cut(s) 142, 393, 537
DpnII GATC 3 cut(s) 140, 391, 535
DraI TTTAAA 1 cut(s) 631
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 256, 997, 1017
EarI CTCTTC 3 cut(s) 256, 997, 1017
Eco130I CCWWGG 1 cut(s) 492
Eco47I GGWCC 2 cut(s) 893, 996
Eco88I CYCGRG 1 cut(s) 898
EcoRII CCWGG 2 cut(s) 84, 569
EcoT14I CCWWGG 1 cut(s) 492
EcoT22I ATGCAT 3 cut(s) 628, 666, 1143
ErhI CCWWGG 1 cut(s) 492
Esp3I CGTCTC 2 cut(s) 16, 193
FaeI CATG 6 cut(s) 104, 158, 448, 469, 496, 1031
FaqI GGGAC 2 cut(s) 109, 117
FatI CATG 6 cut(s) 100, 154, 444, 465, 492, 1027
FauNDI CATATG 1 cut(s) 651
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 4 cut(s) 430, 533, 673, 854
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 2 cut(s) 287, 920
GlaI GCGC 1 cut(s) 218
GluI GCNGC 1 cut(s) 386
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 219
Hin1II CATG 6 cut(s) 104, 158, 448, 469, 496, 1031
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HinfI GANTC 3 cut(s) 227, 337, 742
HphI GGTGA 5 cut(s) 25, 72, 212, 1046, 1061
Hpy166II GTNNAC 2 cut(s) 489, 873
Hpy188I TCNGA 7 cut(s) 226, 232, 263, 590, 621, 860, 1146
Hpy188III TCNNGA 4 cut(s) 459, 900, 999, 1164
Hpy8I GTNNAC 2 cut(s) 489, 873
HpyAV CCTTC 5 cut(s) 46, 407, 441, 619, 690
HpyCH4III ACNGT 2 cut(s) 131, 481
HpyCH4IV ACGT 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 3 cut(s) 870, 1133, 1138
HpyF3I CTNAG 3 cut(s) 144, 260, 716
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 6 cut(s) 104, 158, 448, 469, 496, 1031
HspAI GCGC 1 cut(s) 217
KpnI GGTACC 1 cut(s) 569
Kzo9I GATC 3 cut(s) 140, 391, 535
LguI GCTCTTC 2 cut(s) 997, 1017
LmnI GCTCC 2 cut(s) 701, 769
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 3 cut(s) 651, 937, 1150
MaeI CTAG 2 cut(s) 287, 920
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 808, 1079
MalI GATC 3 cut(s) 142, 393, 537
MboI GATC 3 cut(s) 140, 391, 535
MfeI CAATTG 2 cut(s) 930, 1075
MhlI GDGCHC 2 cut(s) 766, 875
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 546, 930, 967, 1039, 1075, 1189
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 568, 679
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 3 cut(s) 628, 666, 1143
MroXI GAANNNNTTC 1 cut(s) 430
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 96, 354, 396, 630, 966
MslI CAYNNNNRTG 1 cut(s) 1032
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1096
MspCI CTTAAG 1 cut(s) 395
MspR9I CCNGG 2 cut(s) 86, 571
MunI CAATTG 2 cut(s) 930, 1075
Mva1269I GAATGC 1 cut(s) 628
MvaI CCWGG 2 cut(s) 86, 571
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 3 cut(s) 870, 1133, 1138
NcoI CCATGG 1 cut(s) 492
NdeI CATATG 1 cut(s) 651
NdeII GATC 3 cut(s) 140, 391, 535
NheI GCTAGC 1 cut(s) 919
NlaIII CATG 6 cut(s) 104, 158, 448, 469, 496, 1031
NlaIV GGNNCC 3 cut(s) 567, 607, 895
NmuCI GTSAC 1 cut(s) 1079
NsiI ATGCAT 3 cut(s) 628, 666, 1143
NspV TTCGAA 1 cut(s) 280
PciSI GCTCTTC 2 cut(s) 997, 1017
PctI GAATGC 1 cut(s) 628
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 3 cut(s) 227, 337, 742
PflFI GACNNNGTC 1 cut(s) 1089
PkrI GCNGC 1 cut(s) 387
PshAI GACNNNNGTC 1 cut(s) 1077
Psp6I CCWGG 2 cut(s) 84, 569
PspGI CCWGG 2 cut(s) 84, 569
PspN4I GGNNCC 3 cut(s) 567, 607, 895
PspPI GGNCC 2 cut(s) 893, 996
PsyI GACNNNGTC 1 cut(s) 1089
RsaI GTAC 4 cut(s) 239, 349, 567, 656
RsaNI GTAC 4 cut(s) 238, 348, 566, 655
RseI CAYNNNNRTG 1 cut(s) 1032
SapI GCTCTTC 2 cut(s) 997, 1017
SaqAI TTAA 5 cut(s) 96, 354, 396, 630, 966
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 3 cut(s) 140, 391, 535
Sau96I GGNCC 2 cut(s) 893, 996
ScrFI CCNGG 2 cut(s) 86, 571
SduI GDGCHC 2 cut(s) 766, 875
SfaNI GCATC 3 cut(s) 651, 937, 1150
SfuI TTCGAA 1 cut(s) 280
SinI GGWCC 2 cut(s) 893, 996
SmiMI CAYNNNNRTG 1 cut(s) 1032
SmlI CTYRAG 2 cut(s) 395, 1207
SmoI CTYRAG 2 cut(s) 395, 1207
Sse9I AATT 6 cut(s) 546, 930, 967, 1039, 1075, 1189
SsiI CCGC 3 cut(s) 215, 994, 1094
SspI AATATT 1 cut(s) 1117
SspMI CTAG 2 cut(s) 287, 920
StyD4I CCNGG 2 cut(s) 84, 569
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 131, 481
TaiI ACGT 1 cut(s) 12
TaqI TCGA 6 cut(s) 92, 139, 150, 269, 280, 390
TasI AATT 6 cut(s) 546, 930, 967, 1039, 1075, 1189
TatI WGTACW 1 cut(s) 654
TfiI GAWTC 3 cut(s) 227, 337, 742
Tru1I TTAA 5 cut(s) 96, 354, 396, 630, 966
Tru9I TTAA 5 cut(s) 96, 354, 396, 630, 966
TseFI GTSAC 1 cut(s) 1079
TseI GCWGC 1 cut(s) 385
Tsp45I GTSAC 1 cut(s) 1079
TspDTI ATGAA 4 cut(s) 461, 963, 1172, 1188
Tth111I GACNNNGTC 1 cut(s) 1089
Vha464I CTTAAG 1 cut(s) 395
VneI GTGCAC 1 cut(s) 871
VpaK11BI GGWCC 2 cut(s) 893, 996
XapI RAATTY 1 cut(s) 1189
XmnI GAANNNNTTC 1 cut(s) 430
XspI CTAG 2 cut(s) 287, 920
Zsp2I ATGCAT 3 cut(s) 628, 666, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.