Rorug02G0508100

Cell morphogenesis N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014339
Physical Location & Seq
Reverse (-)
63937353 .. 63938751
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0508100.1

Sequence Viewer

Length: 1134 bp
ATGCGATTCAGCCTTGTTTGTATGTCATGGTATTCTGTGGCAAAGGATAATAAAAGCAAACTTTCTATGACTCCTCCTCCTCCGATGCTCTTGATTTATACTGGGGAAGAAGATTTATGGAAATTATATAACGCAATGGACAACAAGATCTTTGATTTGCAACTGCGAGTGCCAAATAAGCGGTTATGTGGATCTTCAAAAGGGTGGTTAATATTTGCGGATTGGAATTTTGTGGATAAGAATCTCGGAGTAACTCTAGTAAATCCATTCTTTAGGGTGAAAGGGAGGAGAGAAAAAGAAAATTCGGTCATTCGCCTTCCTCCACTAACGCCTCCAGGGTGGAGAAAGTGGGTCAGAGTTCGTCGAAGAAATAGGGATGATTGGGTTGAACGTTGTCAATATTATGTACACAAGGCTACACTTTCAGCTGACCCTGCATCAGATGCAAACGATTGCATTGTAGTAGTCATATACGAGGAAAGACTTCGGTTGGCTTTTATTAGACTTGGTAAAGAGACAACATGGACTTATATAGATGAAAGAGTGGGCACAAGTGTTAGTAGTATAGTTATTAATGGCTGCCGTGGAATTGAAGAAGTTGCTCGAGTTGAAGATAAGTTCTATGCCGTTAATTATTCGAGCGAACTTTATTCTTTTAAAGTGACTCCTCAGTCTAGCTCAGATGTGAAATTGGCTGCTTGCGGTGTTGAACAAAAAGTCTTCGTCAAGAGATATCTTGTGGAAGTAAAAGAAAAAGTAATTTTGATGGTTCAGAGATACATTAAATTTGATTATGAAGTTGGCAGACGTGTGACAAGAAAATTTAGAATTTTTGAATTGAATTTGGGCGAGCGCGAATGGATTGAGAAACACTCGTTAGGTGATGTTGCTCTTTTCGTCGGAGATAACTCTTCAGTGTCAGTGTTGGCTTCAAATTTTCCTGCATGTCAACCAAATTGCATATACTTCAACCATGATCGTTCTCGTGCGGGTTGTGAGTTTCCGCCTCATGATTTTGGTGTTTATAATGTCGTTAGTCAAAGCTTTCTAAACCCTTACCCCACACATGTCAAGACCATGGTGGAGACGACTGATCGTCTACCAATTTGGATTATGCCAACTATTCAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOR2-PAG1_C MOR2-PAG1_N MOR2-PAG1_mid

Protein Analysis

377

Amino Acids

43.8

Weight (kDa)

9.13

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 43 - 343 2.8e-50 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15680
fragaria_vesca FvH4_6g46050
malus_domestica MD09G1077600.v1.1 MD17G1067900.v1.1
prunus_persica Prupe.3G246500_v2.0.a1
pyrus_communis pycom09g00460
rosa_chinensis RchiOBHm_Chr2g0164371
rosa_laevigata RLG00000021455
rosa_multiflora Rmu_co8522507.1_g000001
rosa_roxburghii Rroxscaffold_2G00086620
rosa_rugosa Rorug02G0508100
rosa_samantha Rh2AG576100 Rh2BG587100 Rh2CG557900 Rh2DG596800
rosa_wichuraiana Rw2G047710 Rw2G047810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1026
AasI GACNNNNNNGTC 1 cut(s) 670
AccI GTMKAC 1 cut(s) 1099
AccII CGCG 1 cut(s) 855
AciI CCGC 5 cut(s) 181, 218, 702, 989, 1004
AclI AACGTT 1 cut(s) 391
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 7 cut(s) 226, 301, 785, 821, 828, 841, 934
AcuI CTGAAG 1 cut(s) 897
AfaI GTAC 1 cut(s) 408
AflIII ACRYGT 2 cut(s) 808, 1066
AgsI TTSAA 9 cut(s) 198, 389, 593, 611, 710, 836, 841, 933, 970
AhdI GACNNNNNGTC 1 cut(s) 1095
AjiI CACGTC 1 cut(s) 809
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 3 cut(s) 428, 678, 1044
AluI AGCT 3 cut(s) 428, 678, 1044
Alw26I GTCTC 2 cut(s) 509, 1079
AlwI GGATC 1 cut(s) 199
Ama87I CYCGRG 1 cut(s) 603
ApeKI GCWGC 2 cut(s) 579, 695
ApoI RAATTY 7 cut(s) 226, 301, 785, 821, 828, 841, 934
AseI ATTAAT 1 cut(s) 573
Asp700I GAANNNNTTC 1 cut(s) 483
AspLEI GCGC 1 cut(s) 855
AsuHPI GGTGA 2 cut(s) 289, 893
AvaI CYCGRG 1 cut(s) 603
BaeGI GKGCMC 1 cut(s) 551
BauI CACGAG 1 cut(s) 984
BbsI GAAGAC 1 cut(s) 712
BbvI GCAGC 2 cut(s) 566, 682
BccI CCATC 1 cut(s) 760
BceAI ACGGC 2 cut(s) 567, 611
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 509, 1079
BfaI CTAG 2 cut(s) 257, 675
BglII AGATCT 1 cut(s) 147
BisI GCNGC 2 cut(s) 580, 696
BlsI GCNGC 2 cut(s) 581, 697
Bme1390I CCNGG 1 cut(s) 336
BmeRI GACNNNNNGTC 1 cut(s) 1095
BmeT110I CYCGRG 1 cut(s) 603
BmgBI CACGTC 1 cut(s) 809
BmrFI CCNGG 1 cut(s) 336
BmrI ACTGGG 1 cut(s) 111
BmsI GCATC 3 cut(s) 75, 433, 446
BmuI ACTGGG 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 712
BplI GAGNNNNNCTC 2 cut(s) 857, 889
BpmI CTGGAG 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 240
BsaJI CCNNGG 3 cut(s) 335, 583, 1077
BsaXI ACNNNNNCTCC 2 cut(s) 61, 91
Bse1I ACTGG 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 240
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 3 cut(s) 335, 583, 1077
BseGI GGATG 1 cut(s) 382
BseJI GATNNNNATC 1 cut(s) 240
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 683, 693
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 5 cut(s) 63, 66, 69, 301, 657
BseSI GKGCMC 1 cut(s) 551
BseXI GCAGC 2 cut(s) 566, 682
Bsh1236I CGCG 1 cut(s) 855
BsiHKCI CYCGRG 1 cut(s) 603
BsmAI GTCTC 2 cut(s) 509, 1079
BsmBI CGTCTC 1 cut(s) 1079
BsoBI CYCGRG 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 551
Bsp1407I TGTACA 1 cut(s) 406
Bsp143I GATC 4 cut(s) 147, 191, 976, 1093
Bsp19I CCATGG 1 cut(s) 1077
BspACI CCGC 5 cut(s) 181, 218, 702, 989, 1004
BspCNI CTCAG 2 cut(s) 682, 692
BspFNI CGCG 1 cut(s) 855
BspHI TCATGA 1 cut(s) 1009
BspPI GGATC 1 cut(s) 199
BsrDI GCAATG 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 406
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 335, 583, 1077
BssMI GATC 4 cut(s) 147, 191, 976, 1093
BssSI CACGAG 1 cut(s) 984
BssT1I CCWWGG 1 cut(s) 1077
Bst2BI CACGAG 1 cut(s) 984
Bst2UI CCWGG 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 916
BstAPI GCANNNNNTGC 1 cut(s) 443
BstAUI TGTACA 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 700, 851
BstDEI CTNAG 2 cut(s) 669, 679
BstDSI CCRYGG 2 cut(s) 583, 1077
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 855
BstHHI GCGC 1 cut(s) 855
BstKTI GATC 4 cut(s) 150, 194, 979, 1096
BstMAI GTCTC 2 cut(s) 509, 1079
BstMBI GATC 4 cut(s) 147, 191, 976, 1093
BstMWI GCNNNNNNNGC 3 cut(s) 178, 434, 443
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 2 cut(s) 948, 1070
BstSCI CCNGG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 551
BstUI CGCG 1 cut(s) 855
BstV1I GCAGC 2 cut(s) 566, 682
BstV2I GAAGAC 1 cut(s) 712
BstX2I RGATCY 2 cut(s) 147, 191
BstYI RGATCY 2 cut(s) 147, 191
BtgI CCRYGG 2 cut(s) 583, 1077
BtrI CACGTC 1 cut(s) 809
BtsCI GGATG 1 cut(s) 382
BtsIMutI CAGTG 2 cut(s) 921, 927
Cac8I GCNNGC 2 cut(s) 700, 851
CciI TCATGA 1 cut(s) 1009
CfoI GCGC 1 cut(s) 855
Csp6I GTAC 1 cut(s) 407
CviAII CATG 7 cut(s) 27, 522, 945, 974, 1010, 1067, 1078
CviJI RGCY 9 cut(s) 12, 416, 428, 494, 579, 678, 695, 929, 1044
CviKI_1 RGCY 9 cut(s) 12, 416, 428, 494, 579, 678, 695, 929, 1044
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 2 cut(s) 669, 679
DpnI GATC 4 cut(s) 149, 193, 978, 1095
DpnII GATC 4 cut(s) 147, 191, 976, 1093
DraI TTTAAA 1 cut(s) 658
DrdI GACNNNNNNGTC 1 cut(s) 670
DriI GACNNNNNGTC 1 cut(s) 1095
DseDI GACNNNNNNGTC 1 cut(s) 670
Eam1104I CTCTTC 1 cut(s) 916
Eam1105I GACNNNNNGTC 1 cut(s) 1095
EarI CTCTTC 1 cut(s) 916
EciI GGCGGA 1 cut(s) 993
Eco130I CCWWGG 1 cut(s) 1077
Eco32I GATATC 1 cut(s) 734
Eco57I CTGAAG 1 cut(s) 897
Eco88I CYCGRG 1 cut(s) 603
EcoRII CCWGG 1 cut(s) 334
EcoRV GATATC 1 cut(s) 734
EcoT14I CCWWGG 1 cut(s) 1077
ErhI CCWWGG 1 cut(s) 1077
Esp3I CGTCTC 1 cut(s) 1079
FaeI CATG 7 cut(s) 30, 525, 948, 977, 1013, 1070, 1081
FatI CATG 7 cut(s) 26, 521, 944, 973, 1009, 1066, 1077
FauI CCCGC 1 cut(s) 982
FblI GTMKAC 1 cut(s) 1099
Fnu4HI GCNGC 2 cut(s) 580, 696
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 2 cut(s) 580, 696
FspBI CTAG 2 cut(s) 257, 675
GlaI GCGC 1 cut(s) 854
GluI GCNGC 2 cut(s) 580, 696
GsuI CTGGAG 1 cut(s) 318
HhaI GCGC 1 cut(s) 855
Hin1II CATG 7 cut(s) 30, 525, 948, 977, 1013, 1070, 1081
Hin6I GCGC 1 cut(s) 853
HinP1I GCGC 1 cut(s) 853
HincII GTYRAC 1 cut(s) 950
HindII GTYRAC 1 cut(s) 950
HindIII AAGCTT 1 cut(s) 1042
HinfI GANTC 4 cut(s) 6, 70, 241, 664
HphI GGTGA 2 cut(s) 289, 893
Hpy166II GTNNAC 3 cut(s) 409, 950, 1100
Hpy188I TCNGA 7 cut(s) 84, 248, 356, 442, 682, 774, 902
Hpy188III TCNNGA 4 cut(s) 91, 727, 1010, 1072
Hpy8I GTNNAC 3 cut(s) 409, 950, 1100
Hpy99I CGWCG 2 cut(s) 366, 902
HpyAV CCTTC 1 cut(s) 326
HpyCH4IV ACGT 2 cut(s) 391, 808
HpyCH4V TGCA 6 cut(s) 160, 437, 446, 456, 944, 960
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 434, 443
HpyF3I CTNAG 2 cut(s) 669, 679
HpySE526I ACGT 2 cut(s) 391, 808
Hsp92II CATG 7 cut(s) 30, 525, 948, 977, 1013, 1070, 1081
HspAI GCGC 1 cut(s) 853
Kzo9I GATC 4 cut(s) 147, 191, 976, 1093
LpnPI CCDG 5 cut(s) 87, 321, 348, 447, 954
Lsp1109I GCAGC 2 cut(s) 566, 682
LweI GCATC 3 cut(s) 75, 433, 446
MaeI CTAG 2 cut(s) 257, 675
MaeII ACGT 2 cut(s) 391, 808
MaeIII GTNAC 3 cut(s) 250, 661, 811
MalI GATC 4 cut(s) 149, 193, 978, 1095
MboI GATC 4 cut(s) 147, 191, 976, 1093
MboII GAAGA 8 cut(s) 119, 122, 186, 378, 605, 623, 712, 903
MflI RGATCY 2 cut(s) 147, 191
MhlI GDGCHC 1 cut(s) 551
MlyI GAGTC 2 cut(s) 64, 658
MmeI TCCRAC 1 cut(s) 880
MnlI CCTC 9 cut(s) 84, 87, 90, 279, 330, 342, 469, 678, 1017
MroXI GAANNNNTTC 1 cut(s) 483
MseI TTAA 5 cut(s) 209, 573, 630, 657, 783
MspA1I CMGCKG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 855
MwoI GCNNNNNNNGC 3 cut(s) 178, 434, 443
NcoI CCATGG 1 cut(s) 1077
NdeII GATC 4 cut(s) 147, 191, 976, 1093
NlaIII CATG 7 cut(s) 30, 525, 948, 977, 1013, 1070, 1081
NmuCI GTSAC 2 cut(s) 661, 811
NspI RCATGY 2 cut(s) 948, 1070
PaeR7I CTCGAG 1 cut(s) 603
PagI TCATGA 1 cut(s) 1009
PciI ACATGT 1 cut(s) 1066
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 2 cut(s) 6, 241
PkrI GCNGC 2 cut(s) 581, 697
PleI GAGTC 2 cut(s) 64, 658
PpsI GAGTC 2 cut(s) 64, 658
PscI ACATGT 1 cut(s) 1066
PshBI ATTAAT 1 cut(s) 573
PsiI TTATAA 1 cut(s) 1026
Psp1406I AACGTT 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspXI VCTCGAGB 1 cut(s) 603
PsuI RGATCY 2 cut(s) 147, 191
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
SaqAI TTAA 5 cut(s) 209, 573, 630, 657, 783
SatI GCNGC 2 cut(s) 580, 696
Sau3AI GATC 4 cut(s) 147, 191, 976, 1093
SchI GAGTC 2 cut(s) 64, 658
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 551
SetI ASST 6 cut(s) 394, 430, 680, 811, 883, 1046
SfaNI GCATC 3 cut(s) 75, 433, 446
Sfr274I CTCGAG 1 cut(s) 603
SlaI CTCGAG 1 cut(s) 603
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
SsiI CCGC 5 cut(s) 181, 218, 702, 989, 1004
SspI AATATT 2 cut(s) 213, 401
SspMI CTAG 2 cut(s) 257, 675
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 1077
TaiI ACGT 2 cut(s) 394, 811
TaqI TCGA 3 cut(s) 364, 604, 638
TaqII GACCGA 1 cut(s) 295
TatI WGTACW 1 cut(s) 406
TfiI GAWTC 2 cut(s) 6, 241
Tru1I TTAA 5 cut(s) 209, 573, 630, 657, 783
Tru9I TTAA 5 cut(s) 209, 573, 630, 657, 783
TscAI CASTG 2 cut(s) 921, 927
TseFI GTSAC 2 cut(s) 661, 811
TseI GCWGC 2 cut(s) 579, 695
Tsp45I GTSAC 2 cut(s) 661, 811
TspDTI ATGAA 2 cut(s) 552, 810
TspRI CASTG 2 cut(s) 921, 927
VspI ATTAAT 1 cut(s) 573
XapI RAATTY 7 cut(s) 226, 301, 785, 821, 828, 841, 934
XceI RCATGY 2 cut(s) 948, 1070
XhoI CTCGAG 1 cut(s) 603
XmiI GTMKAC 1 cut(s) 1099
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 2 cut(s) 257, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.