Rorug02G0574900

carboxylesterase 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011063
Physical Location & Seq
Forward (+)
70005120 .. 70006608
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0574900.1

Sequence Viewer

Length: 432 bp
ATGGCGACGGCGAAGACTGTGAAGGACGTGTCACCACACGAGTTCGTGAAGCATTACGCCGCTCATCTGAAGAGATCCGGCAAGATTGAGCTTCCTCATTGGACTGACATTGTCAAGACTGCAACTTTCAAGGAGCTTGCCCCCTATGATCCTGACTGGTATTACATCAGGGCTGCTTCCATGGCAAGGAAGATCTACCTCAGGGGTGGTCTTGGTGTTGGTGCTTTCAAGAGGATCTATGGTGGAAGCAAGAGGAACGGAAGTCGTCCACCACATTTTTGTGAGAGTAGCGGTGCTATTGCCCGACATATTCTGCAGCAGTTGGCTGAAGTTAAGATCGTTGAAATTGATCCAAAGGGTGGGAGGAGAATCACATCAAACGGTCGACGGGATCTTGACCAAGTTGCTGGGAGGATTGTGGTTGCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0016787
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

143

Amino Acids

15.95

Weight (kDa)

10.09

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S19e PF01090 6 - 140 9.4e-57 Ribosomal protein S19e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27320 AT3G27320
fragaria_vesca FvH4_6g52540 FvH4_6g52540
malus_domestica MD09G1017600.v1.1 MD17G1018400.v1.1
prunus_persica Prupe.3G299300_v2.0.a1
pyrus_communis pycom111g01450 pycom17g01500
rosa_chinensis RchiOBHm_Chr2g0174131
rosa_laevigata RLG00000022249
rosa_multiflora Rmu_sc0003188.1_g000037 Rmu_sc0023199.1_g000004
rosa_roxburghii Rroxscaffold_2G00078430
rosa_rugosa Rorug02G0574900
rosa_samantha Rh2AG654500 Rh2BG665700 Rh2CG629900 Rh2DG680300
rosa_wichuraiana Rw2G053720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 385
AciI CCGC 2 cut(s) 60, 291
AclWI GGATC 5 cut(s) 69, 143, 242, 344, 399
AcuI CTGAAG 2 cut(s) 89, 348
AfiI CCNNNNNNNGG 2 cut(s) 186, 359
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 3 cut(s) 130, 229, 344
AjiI CACGTC 1 cut(s) 28
AluBI AGCT 2 cut(s) 91, 136
AluI AGCT 2 cut(s) 91, 136
AlwI GGATC 5 cut(s) 69, 143, 242, 344, 399
ApeKI GCWGC 2 cut(s) 173, 316
AsuHPI GGTGA 1 cut(s) 24
AxyI CCTNAGG 1 cut(s) 200
BauI CACGAG 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 160, 328
BceAI ACGGC 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 314
BglII AGATCT 1 cut(s) 192
BisI GCNGC 3 cut(s) 60, 174, 317
BlsI GCNGC 3 cut(s) 61, 175, 318
BmgBI CACGTC 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 359
Bse1I ACTGG 1 cut(s) 161
Bse21I CCTNAGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 186, 359
BseMII CTCAG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 379
BseXI GCAGC 2 cut(s) 160, 328
BseYI CCCAGC 1 cut(s) 407
Bsh1285I CGRYCG 1 cut(s) 385
BsiEI CGRYCG 1 cut(s) 385
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 186, 359
Bsp143I GATC 7 cut(s) 74, 148, 192, 234, 336, 349, 391
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 2 cut(s) 60, 291
BspCNI CTCAG 1 cut(s) 213
BspMAI CTGCAG 1 cut(s) 318
BspPI GGATC 5 cut(s) 69, 143, 242, 344, 399
BsrBI CCGCTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 7 cut(s) 74, 148, 192, 234, 336, 349, 391
BssSI CACGAG 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 19, 383
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 180
BstKTI GATC 7 cut(s) 77, 151, 195, 237, 339, 352, 394
BstMBI GATC 7 cut(s) 74, 148, 192, 234, 336, 349, 391
BstMCI CGRYCG 1 cut(s) 385
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 314
BstV1I GCAGC 2 cut(s) 160, 328
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 4 cut(s) 74, 192, 234, 391
BstXI CCANNNNNNTGG 1 cut(s) 407
BstYI RGATCY 4 cut(s) 74, 192, 234, 391
Bsu36I CCTNAGG 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 180
BtrI CACGTC 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 138
CviAII CATG 1 cut(s) 181
CviJI RGCY 4 cut(s) 91, 136, 173, 326
CviKI_1 RGCY 4 cut(s) 91, 136, 173, 326
DdeI CTNAG 1 cut(s) 200
DpnI GATC 7 cut(s) 76, 150, 194, 236, 338, 351, 393
DpnII GATC 7 cut(s) 74, 148, 192, 234, 336, 349, 391
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 180
Eco57I CTGAAG 2 cut(s) 89, 348
Eco81I CCTNAGG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 184
FaiI YATR 4 cut(s) 147, 182, 240, 309
FatI CATG 1 cut(s) 180
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 3 cut(s) 60, 174, 317
Fsp4HI GCNGC 3 cut(s) 60, 174, 317
GluI GCNGC 3 cut(s) 60, 174, 317
GsaI CCCAGC 1 cut(s) 411
HapII CCGG 1 cut(s) 78
Hin1II CATG 1 cut(s) 184
HincII GTYRAC 1 cut(s) 386
HindII GTYRAC 1 cut(s) 386
HinfI GANTC 1 cut(s) 369
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 2 cut(s) 269, 386
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 5 cut(s) 46, 115, 152, 229, 395
Hpy8I GTNNAC 2 cut(s) 269, 386
Hpy99I CGWCG 2 cut(s) 10, 390
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 2 cut(s) 19, 383
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 122, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 7 cut(s) 74, 148, 192, 234, 336, 349, 391
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 6 cut(s) 91, 142, 154, 165, 187, 393
Lsp1109I GCAGC 2 cut(s) 160, 328
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 30
MalI GATC 7 cut(s) 76, 150, 194, 236, 338, 351, 393
MbiI CCGCTC 1 cut(s) 62
MboI GATC 7 cut(s) 74, 148, 192, 234, 336, 349, 391
MboII GAAGA 3 cut(s) 25, 82, 202
MflI RGATCY 4 cut(s) 74, 192, 234, 391
MluCI AATT 1 cut(s) 345
MnlI CCTC 6 cut(s) 105, 209, 225, 246, 357, 405
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 182
NcoI CCATGG 1 cut(s) 180
NdeII GATC 7 cut(s) 74, 148, 192, 234, 336, 349, 391
NlaIII CATG 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 369
PflFI GACNNNGTC 1 cut(s) 110
PflMI CCANNNNNTGG 1 cut(s) 359
PkrI GCNGC 3 cut(s) 61, 175, 318
PspFI CCCAGC 1 cut(s) 407
PstI CTGCAG 1 cut(s) 318
PsuI RGATCY 4 cut(s) 74, 192, 234, 391
PsyI GACNNNGTC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 279
SalI GTCGAC 1 cut(s) 384
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 3 cut(s) 60, 174, 317
Sau3AI GATC 7 cut(s) 74, 148, 192, 234, 336, 349, 391
SetI ASST 4 cut(s) 30, 93, 138, 201
SfcI CTRYAG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 279
Sse9I AATT 1 cut(s) 345
SsiI CCGC 2 cut(s) 60, 291
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 2 cut(s) 19, 383
TaiI ACGT 1 cut(s) 30
TaqI TCGA 1 cut(s) 385
TasI AATT 1 cut(s) 345
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 369
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 2 cut(s) 173, 316
Tsp45I GTSAC 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 273
Tth111I GACNNNGTC 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.