Rorug02G0579200

beta-glucosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018469
Physical Location & Seq
Reverse (-)
70252768 .. 70253004
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0579200.1

Sequence Viewer

Length: 237 bp
ATGGAACTCGTGATCGAGACTCTTGGTGCAGATTCGTCGTCGCCTGTCAAGCTTGACGCCGCAGCCCAAGTGCACATTGAAAAGCATAGAAGACTTCAGGAGGATTTGACTGATGAAATGGTTGGATTGGCAAGGCAACTCAAAGAGACTAGTCTCATGATGAGCCACTCCGTGCAAAACAGTGAAACACTGAAAAACTACTTGACTCTACAGAGGAGGCTGTTGAAAGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

78

Amino Acids

8.77

Weight (kDa)

6.26

Isoelectric Point (pI)

69.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Use1 PF09753 14 - 62 1.7e-15 Membrane fusion protein Use1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018469)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g53000 FvH4_6g53000
rosa_chinensis RchiOBHm_Chr2g0174751
rosa_laevigata RLG00000022292
rosa_roxburghii Rroxscaffold_2G00077770
rosa_rugosa Rorug02G0579200
rosa_samantha Rh1BG121400 Rh2CG634600 Rh2DG684900
rosa_wichuraiana Rw2G054120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 57
AdeI CACNNNGTG 1 cut(s) 172
AgsI TTSAA 2 cut(s) 80, 226
AhlI ACTAGT 1 cut(s) 149
AluBI AGCT 2 cut(s) 52, 233
AluI AGCT 2 cut(s) 52, 233
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 3 cut(s) 11, 140, 158
Alw44I GTGCAC 1 cut(s) 71
ApaLI GTGCAC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 75
BauI CACGAG 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BcoDI GTCTC 3 cut(s) 11, 140, 158
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 209
BisI GCNGC 2 cut(s) 60, 63
BlsI GCNGC 2 cut(s) 61, 64
BpiI GAAGAC 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 229
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 75
BsmAI GTCTC 3 cut(s) 11, 140, 158
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 1 cut(s) 60
BspHI TCATGA 1 cut(s) 156
BssMI GATC 1 cut(s) 12
BssNI GRCGYC 1 cut(s) 57
BssSI CACGAG 1 cut(s) 8
Bst2BI CACGAG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 182
BstACI GRCGYC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 234
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 3 cut(s) 11, 140, 158
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 209
BstSLI GKGCMC 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 187, 188
CciI TCATGA 1 cut(s) 156
CseI GACGC 1 cut(s) 65
CviAII CATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 52, 65, 165, 220, 233
CviKI_1 RGCY 5 cut(s) 52, 65, 165, 220, 233
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
DraIII CACNNNGTG 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 80
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 87, 158
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 60, 63
Fsp4HI GCNGC 2 cut(s) 60, 63
FspBI CTAG 1 cut(s) 150
GluI GCNGC 2 cut(s) 60, 63
HgaI GACGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 3 cut(s) 19, 32, 205
Hpy166II GTNNAC 1 cut(s) 73
Hpy188III TCNNGA 4 cut(s) 10, 16, 98, 157
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 2 cut(s) 40, 43
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 3 cut(s) 29, 73, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 160
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 2 cut(s) 57, 83
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 1 cut(s) 150
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 75
MlyI GAGTC 2 cut(s) 13, 199
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 3 cut(s) 94, 207, 210
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 1 cut(s) 12
NlaIII CATG 1 cut(s) 160
PagI TCATGA 1 cut(s) 156
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 61, 64
PleI GAGTC 2 cut(s) 13, 199
PpsI GAGTC 2 cut(s) 13, 199
SatI GCNGC 2 cut(s) 60, 63
Sau3AI GATC 1 cut(s) 12
SchI GAGTC 2 cut(s) 13, 199
SduI GDGCHC 1 cut(s) 75
SetI ASST 2 cut(s) 54, 235
SfcI CTRYAG 1 cut(s) 209
SpeI ACTAGT 1 cut(s) 149
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 15
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 32
TscAI CASTG 2 cut(s) 187, 195
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 2 cut(s) 187, 195
VneI GTGCAC 1 cut(s) 71
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.