Rorug02G0609600
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016487
Physical Location & Seq
Reverse (-)
72626439 .. 72627436
998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0609600.1

Sequence Viewer

Length: 930 bp
ATGGGTCTTTCTCGCTGTGGGCTGGGTCGTGGGCGAAGGCAGCCAAAGTGCAGCGGCGGGGTGCGGCTGGCCGGCGGCGATCTCGGACCTCTTTTCTGCAACGGGGATCTATGCAGCGGCGGGGCTTTCGATCTCATGGCAGCGATGAGCCAGGTCGCGGTGGTGCGGCGGTACAGGGATGCGGCGTGGTGGTGGTGTGGTCCAAGGTGGCGGCCTGGTATCGGTGCTGCCAGCGGCTGGCTTTGTGGTGCTGCGATGCGGTGGCGTGGAGATGCGTTGCGGCGTCGTGACGGTGCAAGCCGACGATGTGGTGACGACGGAGGGCGCTGGCAGCAAGTTTGGAGGAGGGAGGCGCCGGATCCTTGCTGGAGGTGGAAGTTGGGCCGGGCCTCTGTGCTTGGGCCTTACTGTTTGGACGAGCTCTTGTTTTTAGTTGCTTTTGCTTTTGTTGGTTGTTTTTCTGTTGTTGCTTTGCTGGTAATAAACTCCAACCGTGTTCCGGTTGGAGGCAGTGGCCTGTGTGCCAGTCATTGCACCTTGTGTGCCTATTTTGCTCTAGGTAGGCAGCGAGTTCCTTGCACTTGCAAATGGTCGCTGCCTCCTAGTAGCAGTGTGAAACTAAGTGTCATTGGAGGTTGTTTCCAGTGGCATCATGATGGGAAAGTTGTGCGTATGGTAGTTATGCTTTGCTGCAGTCGGGTTGCAGATCAAGTTATCTTTCCGTTGTGTCACCGCTGCGTTAATGCAGTTAAAGCAATTGGAGTCGCCAGTAGAGCGCTCCTTGCTAGTTGGTGCTTTGTTGGGTACAAACATTTAGTAGAGACTCAGGATAGTATTTCAGGATGTCCTACTTATTGTAATCAGGGGTTTAGGCTTTTTGTCCCCCCCTCGTATTCGACAGTTTCTTTAATCGAGGCTTTCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

309

Amino Acids

33.74

Weight (kDa)

9.44

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016487)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00780
malus_domestica MD04G1241300.v1.1
prunus_persica Prupe.6G358900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0448261
rosa_laevigata RLG00000025932
rosa_rugosa Rorug02G0609600 Rorug02G0609700 Rorug02G0609800 Rorug02G0609900
rosa_samantha Rh3AG009400 Rh3BG009000 Rh3CG009000 Rh3DG009600
rosa_wichuraiana Rw3G000760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 352
AccB7I CCANNNNNTGG 1 cut(s) 237
AccII CGCG 1 cut(s) 158
AclWI GGATC 3 cut(s) 114, 353, 366
AcoI YGGCCR 1 cut(s) 69
AcyI GRCGYC 2 cut(s) 283, 353
AdeI CACNNNGTG 1 cut(s) 540
AfaI GTAC 2 cut(s) 173, 806
AfeI AGCGCT 1 cut(s) 777
AfiI CCNNNNNNNGG 5 cut(s) 157, 221, 237, 499, 506
AgsI TTSAA 1 cut(s) 922
AjnI CCWGG 2 cut(s) 150, 214
AluBI AGCT 2 cut(s) 421, 926
AluI AGCT 2 cut(s) 421, 926
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 1 cut(s) 815
AlwI GGATC 3 cut(s) 114, 353, 366
AlwNI CAGNNNCTG 1 cut(s) 237
Aor51HI AGCGCT 1 cut(s) 777
AoxI GGCC 6 cut(s) 69, 212, 382, 387, 401, 514
AspLEI GCGC 3 cut(s) 327, 355, 778
AspS9I GGNCC 5 cut(s) 86, 200, 382, 387, 401
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 2 cut(s) 323, 722
AvaII GGWCC 2 cut(s) 86, 200
BamHI GGATCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 423
BccI CCATC 1 cut(s) 650
BcgI CGANNNNNNTGC 2 cut(s) 558, 592
BciT130I CCWGG 2 cut(s) 152, 216
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 815
BfaI CTAG 3 cut(s) 557, 603, 786
BfmI CTRYAG 1 cut(s) 691
BfoI RGCGCY 3 cut(s) 328, 356, 779
Bme1390I CCNGG 3 cut(s) 152, 216, 386
Bme18I GGWCC 2 cut(s) 86, 200
BmgT120I GGNCC 5 cut(s) 86, 200, 382, 387, 401
BmiI GGNNCC 2 cut(s) 354, 360
BmrFI CCNGG 3 cut(s) 152, 216, 386
BmsI GCATC 4 cut(s) 169, 246, 262, 658
BpmI CTGGAG 1 cut(s) 388
BpuMI CCSGG 1 cut(s) 386
BsaHI GRCGYC 2 cut(s) 283, 353
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 499
Bsc4I CCNNNNNNNGG 5 cut(s) 157, 221, 237, 499, 506
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 3 cut(s) 525, 643, 768
Bse3DI GCAATG 1 cut(s) 529
BseBI CCWGG 2 cut(s) 152, 216
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 2 cut(s) 184, 848
BseLI CCNNNNNNNGG 5 cut(s) 157, 221, 237, 499, 506
BseMI GCAATG 1 cut(s) 529
BseMII CTCAG 1 cut(s) 839
BseNI ACTGG 3 cut(s) 525, 643, 768
BseRI GAGGAG 1 cut(s) 358
BseYI CCCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 6 cut(s) 71, 214, 384, 389, 403, 516
BshNI GGYRCC 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 423
BsiSI CCGG 4 cut(s) 72, 356, 385, 500
BslFI GGGAC 1 cut(s) 866
BslI CCNNNNNNNGG 5 cut(s) 157, 221, 237, 499, 506
BsmAI GTCTC 1 cut(s) 815
BsmFI GGGAC 1 cut(s) 866
BsnI GGCC 6 cut(s) 71, 214, 384, 389, 403, 516
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 5 cut(s) 79, 106, 130, 358, 706
BspANI GGCC 6 cut(s) 71, 214, 384, 389, 403, 516
BspCNI CTCAG 1 cut(s) 838
BspFNI CGCG 1 cut(s) 158
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 2 cut(s) 354, 360
BspMAI CTGCAG 1 cut(s) 695
BspPI GGATC 3 cut(s) 114, 353, 366
BspT107I GGYRCC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 529
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 3 cut(s) 525, 643, 768
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 5 cut(s) 79, 106, 130, 358, 706
BssNI GRCGYC 2 cut(s) 283, 353
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 2 cut(s) 152, 216
Bst4CI ACNGT 4 cut(s) 293, 410, 494, 901
BstACI GRCGYC 2 cut(s) 283, 353
BstC8I GCNNGC 6 cut(s) 69, 73, 232, 239, 298, 329
BstDEI CTNAG 2 cut(s) 620, 825
BstF5I GGATG 2 cut(s) 184, 848
BstFNI CGCG 1 cut(s) 158
BstH2I RGCGCY 3 cut(s) 328, 356, 779
BstHHI GCGC 3 cut(s) 327, 355, 778
BstKTI GATC 5 cut(s) 82, 109, 133, 361, 709
BstMAI GTCTC 1 cut(s) 815
BstMBI GATC 5 cut(s) 79, 106, 130, 358, 706
BstMWI GCNNNNNNNGC 7 cut(s) 40, 331, 551, 752, 773, 782, 923
BstNI CCWGG 2 cut(s) 152, 216
BstSCI CCNGG 3 cut(s) 150, 214, 384
BstSFI CTRYAG 1 cut(s) 691
BstUI CGCG 1 cut(s) 158
BstX2I RGATCY 2 cut(s) 106, 358
BstYI RGATCY 2 cut(s) 106, 358
BsuRI GGCC 6 cut(s) 71, 214, 384, 389, 403, 516
BtgZI GCGATG 2 cut(s) 158, 269
BtsCI GGATG 2 cut(s) 184, 848
BtsI GCAGTG 2 cut(s) 517, 616
BtsIMutI CAGTG 3 cut(s) 517, 616, 650
Cac8I GCNNGC 6 cut(s) 69, 73, 232, 239, 298, 329
CaiI CAGNNNCTG 1 cut(s) 237
CciI TCATGA 1 cut(s) 652
CfoI GCGC 3 cut(s) 327, 355, 778
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 5 cut(s) 86, 200, 382, 387, 401
CseI GACGC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 172, 805
CviAII CATG 2 cut(s) 136, 653
CviQI GTAC 2 cut(s) 172, 805
DdeI CTNAG 2 cut(s) 620, 825
DinI GGCGCC 1 cut(s) 354
DpnI GATC 5 cut(s) 81, 108, 132, 360, 708
DpnII GATC 5 cut(s) 79, 106, 130, 358, 706
DraIII CACNNNGTG 1 cut(s) 540
EaeI YGGCCR 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 423
Eco47I GGWCC 2 cut(s) 86, 200
Eco47III AGCGCT 1 cut(s) 777
Eco53kI GAGCTC 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 150, 214
EcoT14I CCWWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 423
EgeI GGCGCC 1 cut(s) 354
EheI GGCGCC 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 2 cut(s) 139, 656
FaiI YATR 5 cut(s) 112, 137, 654, 674, 683
FaqI GGGAC 1 cut(s) 866
FatI CATG 2 cut(s) 135, 652
FauI CCCGC 2 cut(s) 50, 113
FokI GGATG 2 cut(s) 191, 855
FriOI GRGCYC 1 cut(s) 423
FspBI CTAG 3 cut(s) 557, 603, 786
GlaI GCGC 3 cut(s) 326, 354, 777
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 388
HaeII RGCGCY 3 cut(s) 328, 356, 779
HaeIII GGCC 6 cut(s) 71, 214, 384, 389, 403, 516
HapII CCGG 4 cut(s) 72, 356, 385, 500
HgaI GACGC 1 cut(s) 272
HhaI GCGC 3 cut(s) 327, 355, 778
Hin1I GRCGYC 2 cut(s) 283, 353
Hin1II CATG 2 cut(s) 139, 656
Hin6I GCGC 3 cut(s) 325, 353, 776
HinP1I GCGC 3 cut(s) 325, 353, 776
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 2 cut(s) 762, 823
HpaII CCGG 4 cut(s) 72, 356, 385, 500
HphI GGTGA 2 cut(s) 323, 722
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 4 cut(s) 287, 653, 827, 840
Hpy99I CGWCG 3 cut(s) 288, 306, 320
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 4 cut(s) 293, 410, 494, 901
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 331, 551, 752, 773, 782, 923
HpyF3I CTNAG 2 cut(s) 620, 825
Hsp92I GRCGYC 2 cut(s) 283, 353
Hsp92II CATG 2 cut(s) 139, 656
HspAI GCGC 3 cut(s) 325, 353, 776
KasI GGCGCC 1 cut(s) 352
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Kzo9I GATC 5 cut(s) 79, 106, 130, 358, 706
LmnI GCTCC 1 cut(s) 783
LweI GCATC 4 cut(s) 169, 246, 262, 658
MaeI CTAG 3 cut(s) 557, 603, 786
MaeIII GTNAC 3 cut(s) 287, 311, 728
MalI GATC 5 cut(s) 81, 108, 132, 360, 708
MboI GATC 5 cut(s) 79, 106, 130, 358, 706
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 2 cut(s) 106, 358
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 1 cut(s) 756
Mly113I GGCGCC 1 cut(s) 353
MlyI GAGTC 2 cut(s) 771, 817
MmeI TCCRAC 2 cut(s) 484, 513
MroNI GCCGGC 1 cut(s) 71
MseI TTAA 3 cut(s) 741, 750, 908
MslI CAYNNNNRTG 1 cut(s) 654
MspA1I CMGCKG 4 cut(s) 54, 117, 234, 735
MspI CCGG 4 cut(s) 72, 356, 385, 500
MspR9I CCNGG 3 cut(s) 152, 216, 386
MunI CAATTG 1 cut(s) 756
MvaI CCWGG 2 cut(s) 152, 216
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 7 cut(s) 40, 331, 551, 752, 773, 782, 923
NaeI GCCGGC 1 cut(s) 73
NarI GGCGCC 1 cut(s) 353
NciI CCSGG 1 cut(s) 386
NdeII GATC 5 cut(s) 79, 106, 130, 358, 706
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 2 cut(s) 139, 656
NlaIV GGNNCC 2 cut(s) 354, 360
NmuCI GTSAC 3 cut(s) 287, 311, 728
PagI TCATGA 1 cut(s) 652
PdiI GCCGGC 1 cut(s) 73
PflMI CCANNNNNTGG 1 cut(s) 237
PleI GAGTC 2 cut(s) 770, 817
PluTI GGCGCC 1 cut(s) 356
PpsI GAGTC 2 cut(s) 770, 817
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 150, 214
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 2 cut(s) 150, 214
PspN4I GGNNCC 2 cut(s) 354, 360
PspPI GGNCC 5 cut(s) 86, 200, 382, 387, 401
PstI CTGCAG 1 cut(s) 695
PstNI CAGNNNCTG 1 cut(s) 237
PsuI RGATCY 2 cut(s) 106, 358
RsaI GTAC 2 cut(s) 173, 806
RsaNI GTAC 2 cut(s) 172, 805
RseI CAYNNNNRTG 1 cut(s) 654
SacI GAGCTC 1 cut(s) 423
SaqAI TTAA 3 cut(s) 741, 750, 908
Sau3AI GATC 5 cut(s) 79, 106, 130, 358, 706
Sau96I GGNCC 5 cut(s) 86, 200, 382, 387, 401
SchI GAGTC 2 cut(s) 771, 817
ScrFI CCNGG 3 cut(s) 152, 216, 386
SduI GDGCHC 1 cut(s) 423
SetI ASST 9 cut(s) 91, 156, 209, 374, 423, 539, 562, 637, 928
SfaNI GCATC 4 cut(s) 169, 246, 262, 658
SfcI CTRYAG 1 cut(s) 691
SfoI GGCGCC 1 cut(s) 354
SinI GGWCC 2 cut(s) 86, 200
SmiMI CAYNNNNRTG 1 cut(s) 654
Sse9I AATT 1 cut(s) 756
SspDI GGCGCC 1 cut(s) 352
SspMI CTAG 3 cut(s) 557, 603, 786
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 3 cut(s) 150, 214, 384
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 4 cut(s) 293, 410, 494, 901
TaqI TCGA 3 cut(s) 129, 896, 912
TasI AATT 1 cut(s) 756
TauI GCSGC 9 cut(s) 57, 67, 78, 120, 169, 185, 214, 237, 283
Tru1I TTAA 3 cut(s) 741, 750, 908
Tru9I TTAA 3 cut(s) 741, 750, 908
TscAI CASTG 3 cut(s) 517, 616, 650
TseFI GTSAC 3 cut(s) 287, 311, 728
Tsp45I GTSAC 3 cut(s) 287, 311, 728
TspGWI ACGGA 2 cut(s) 333, 711
TspRI CASTG 3 cut(s) 517, 616, 650
Van91I CCANNNNNTGG 1 cut(s) 237
VpaK11BI GGWCC 2 cut(s) 86, 200
XspI CTAG 3 cut(s) 557, 603, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.