Rorug02G0609800
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016487
Physical Location & Seq
Reverse (-)
72637327 .. 72639802
2476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0609800.1

Sequence Viewer

Length: 957 bp
ATGGCAGGAAGGTCTTGTTACAGAGATGTCCTGCCATTTACAGCCATGGTGACTATGGAGTCCATGGACGTGGGCTTGAACACACTGTTCAAAGCTGCAACAATGACAGGAATGAGCTACCATGTCTTTATTGCCTACACTTATTCCATAGCTGCTCTTGCTCTTGTTCCAGTTCCTCTCATCTCCCACAGATCAAGGAGGCTTCCTCCCCTCAACTTTTCCATCATGAGAAAAATTCTTCTTCTTGGGCTAATTGGGAGCTCATCTCAGATAATGGGGTATGCAGGAATCAATTACAGCTCTCCAATGCTTTATTCTGCTATCAGCAACCTTCTGCCAGCTTTCACTTTCATTCTTGCCTTCATTTTCAGGTTGGAGACTGTAGCATTGAAAACCAGAAGCACTCAAGCTAAAATTGTTGGTACTATAGTTTCACTCGCAGGTGCATTTGTGGTGACTCTATATAAGGGCCCCCGAATCTCTTTTGCTAAACTCAACACCTTCAAACTCAAACTGGGTCATTGGAGGCCTTCTGATAACAGCCGAGTATATATTGGTGACACTTTGAAAAAAAATCCAAATGCTTGGAGATTGAGACCTGATATGGCATTGGTATCCATCCTGTGCTCAGGACTACTAAACTCATTATTGAACAATACCGTTCACACATGGACCTTGCGCTTGAAGGGACCTGTGTATGTGACAATGTTCAAGCCATTGTCGATTGCCATTGCTGTTGTCATGGGCGTAACGTTCCTTGGTGATACACTTCATCTGGGAAGCCTACTTGGAGCAACAATTATATCAGTTGGGTTTTACACGGTACTGTGGGGAAAAGCTAAAGAAGAGACTCGTGAAGACTCTGGAGCTGATAGCCTGGAATCACCATCTAGCAATAAGGCCCCTTTATTGCAAACCTATAAAACCGAGAATGCATCTCTAGACCAAAATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

318

Amino Acids

34.84

Weight (kDa)

9.88

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 25 - 153 4.5e-07 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016487)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00780
malus_domestica MD04G1241300.v1.1
prunus_persica Prupe.6G358900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0448261
rosa_laevigata RLG00000025932
rosa_rugosa Rorug02G0609600 Rorug02G0609700 Rorug02G0609800 Rorug02G0609900
rosa_samantha Rh3AG009400 Rh3BG009000 Rh3CG009000 Rh3DG009600
rosa_wichuraiana Rw3G000760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 431
AasI GACNNNNNNGTC 1 cut(s) 58
Acc36I ACCTGC 1 cut(s) 431
AclI AACGTT 1 cut(s) 752
AcsI RAATTY 1 cut(s) 234
AfaI GTAC 2 cut(s) 424, 825
AgsI TTSAA 8 cut(s) 79, 91, 391, 505, 568, 652, 685, 712
AjiI CACGTC 1 cut(s) 70
AjnI CCWGG 1 cut(s) 876
AjuI GAANNNNNNNTTGG 2 cut(s) 298, 330
AluBI AGCT 9 cut(s) 95, 117, 152, 261, 300, 341, 410, 839, 869
AluI AGCT 9 cut(s) 95, 117, 152, 261, 300, 341, 410, 839, 869
Alw21I GWGCWC 2 cut(s) 263, 629
Alw26I GTCTC 3 cut(s) 371, 589, 842
AoxI GGCC 3 cut(s) 469, 527, 900
ApaI GGGCCC 1 cut(s) 473
ApeKI GCWGC 2 cut(s) 95, 152
ApoI RAATTY 1 cut(s) 234
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 5 cut(s) 469, 470, 672, 689, 901
AsuHPI GGTGA 5 cut(s) 61, 466, 569, 773, 876
AvaII GGWCC 2 cut(s) 672, 689
BaeGI GKGCMC 1 cut(s) 473
BaeI ACNNNNGTAYC 2 cut(s) 414, 447
BanII GRGCYC 2 cut(s) 263, 473
BauI CACGAG 1 cut(s) 852
BbsI GAAGAC 1 cut(s) 864
Bbv12I GWGCWC 2 cut(s) 263, 629
BbvI GCAGC 2 cut(s) 82, 139
BccI CCATC 3 cut(s) 230, 626, 895
BciT130I CCWGG 1 cut(s) 878
BciVI GTATCC 1 cut(s) 625
BcoDI GTCTC 3 cut(s) 371, 589, 842
BfaI CTAG 2 cut(s) 891, 941
BfmI CTRYAG 2 cut(s) 381, 426
BfuAI ACCTGC 1 cut(s) 431
BfuI GTATCC 1 cut(s) 625
BisI GCNGC 2 cut(s) 96, 153
BlsI GCNGC 2 cut(s) 97, 154
Bme1390I CCNGG 1 cut(s) 878
Bme18I GGWCC 2 cut(s) 672, 689
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 5 cut(s) 469, 470, 672, 689, 901
BmiI GGNNCC 4 cut(s) 471, 472, 690, 903
BmrFI CCNGG 1 cut(s) 878
BmrI ACTGGG 1 cut(s) 524
BmsI GCATC 1 cut(s) 944
BmuI ACTGGG 1 cut(s) 524
BpiI GAAGAC 1 cut(s) 864
BplI GAGNNNNNCTC 4 cut(s) 190, 222, 250, 282
BpmI CTGGAG 1 cut(s) 885
Bpu10I CCTNAGC 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 3 cut(s) 45, 63, 757
Bse1I ACTGG 2 cut(s) 170, 519
Bse3DI GCAATG 1 cut(s) 729
BseBI CCWGG 1 cut(s) 878
BseDI CCNNGG 3 cut(s) 45, 63, 757
BseGI GGATG 1 cut(s) 618
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 2 cut(s) 281, 642
BseNI ACTGG 2 cut(s) 170, 519
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 2 cut(s) 82, 139
BshFI GGCC 3 cut(s) 471, 529, 902
BsiHKAI GWGCWC 2 cut(s) 263, 629
BslFI GGGAC 1 cut(s) 702
BsmAI GTCTC 3 cut(s) 371, 589, 842
BsmFI GGGAC 1 cut(s) 702
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 3 cut(s) 471, 529, 902
Bso31I GGTCTC 1 cut(s) 589
Bsp120I GGGCCC 1 cut(s) 469
Bsp1286I GDGCHC 3 cut(s) 263, 473, 629
Bsp143I GATC 1 cut(s) 191
Bsp19I CCATGG 2 cut(s) 45, 63
BspANI GGCC 3 cut(s) 471, 529, 902
BspCNI CTCAG 2 cut(s) 280, 641
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 4 cut(s) 471, 472, 690, 903
BspMI ACCTGC 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 2 cut(s) 170, 519
BssECI CCNNGG 3 cut(s) 45, 63, 757
BssMI GATC 1 cut(s) 191
BssSI CACGAG 1 cut(s) 852
BssT1I CCWWGG 3 cut(s) 45, 63, 757
Bst2BI CACGAG 1 cut(s) 852
Bst2UI CCWGG 1 cut(s) 878
Bst4CI ACNGT 5 cut(s) 87, 382, 661, 823, 828
Bst6I CTCTTC 1 cut(s) 840
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 267, 628
BstDSI CCRYGG 2 cut(s) 45, 63
BstF5I GGATG 1 cut(s) 618
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 3 cut(s) 371, 589, 842
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 878
BstSCI CCNGG 1 cut(s) 876
BstSFI CTRYAG 2 cut(s) 381, 426
BstSLI GKGCMC 1 cut(s) 473
BstV1I GCAGC 2 cut(s) 82, 139
BstV2I GAAGAC 1 cut(s) 864
BstXI CCANNNNNNTGG 2 cut(s) 70, 585
BsuI GTATCC 1 cut(s) 625
BsuRI GGCC 3 cut(s) 471, 529, 902
BtgI CCRYGG 2 cut(s) 45, 63
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 618
BtsIMutI CAGTG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 1 cut(s) 339
CciI TCATGA 1 cut(s) 225
CfoI GCGC 1 cut(s) 681
Cfr13I GGNCC 5 cut(s) 469, 470, 672, 689, 901
Csp6I GTAC 2 cut(s) 423, 824
CviAII CATG 6 cut(s) 46, 64, 122, 226, 669, 742
CviQI GTAC 2 cut(s) 423, 824
DdeI CTNAG 2 cut(s) 267, 628
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 3 cut(s) 45, 63, 757
Eco147I AGGCCT 1 cut(s) 529
Eco24I GRGCYC 2 cut(s) 263, 473
Eco31I GGTCTC 1 cut(s) 589
Eco47I GGWCC 2 cut(s) 672, 689
Eco53kI GAGCTC 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 261
EcoO109I RGGNCCY 4 cut(s) 469, 470, 689, 901
EcoRII CCWGG 1 cut(s) 876
EcoT14I CCWWGG 3 cut(s) 45, 63, 757
EcoT22I ATGCAT 1 cut(s) 937
EcoT38I GRGCYC 2 cut(s) 263, 473
ErhI CCWWGG 3 cut(s) 45, 63, 757
FaeI CATG 6 cut(s) 49, 67, 125, 229, 672, 745
FaqI GGGAC 1 cut(s) 702
FatI CATG 6 cut(s) 45, 63, 121, 225, 668, 741
Fnu4HI GCNGC 2 cut(s) 96, 153
FokI GGATG 1 cut(s) 605
FriOI GRGCYC 2 cut(s) 263, 473
Fsp4HI GCNGC 2 cut(s) 96, 153
FspBI CTAG 2 cut(s) 891, 941
GlaI GCGC 1 cut(s) 680
GluI GCNGC 2 cut(s) 96, 153
GsuI CTGGAG 1 cut(s) 885
HaeIII GGCC 3 cut(s) 471, 529, 902
HhaI GCGC 1 cut(s) 681
Hin1II CATG 6 cut(s) 49, 67, 125, 229, 672, 745
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HinfI GANTC 7 cut(s) 59, 288, 457, 477, 850, 860, 881
HphI GGTGA 5 cut(s) 61, 466, 569, 773, 876
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 2 cut(s) 270, 535
Hpy188III TCNNGA 5 cut(s) 226, 630, 854, 864, 941
Hpy8I GTNNAC 1 cut(s) 664
HpyAV CCTTC 6 cut(s) 3, 341, 370, 511, 540, 679
HpyCH4III ACNGT 5 cut(s) 87, 382, 661, 823, 828
HpyCH4IV ACGT 2 cut(s) 69, 752
HpyCH4V TGCA 5 cut(s) 98, 284, 446, 913, 935
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 267, 628
HpySE526I ACGT 2 cut(s) 69, 752
Hsp92II CATG 6 cut(s) 49, 67, 125, 229, 672, 745
HspAI GCGC 1 cut(s) 679
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 3 cut(s) 258, 791, 866
Lsp1109I GCAGC 2 cut(s) 82, 139
LweI GCATC 1 cut(s) 944
MaeI CTAG 2 cut(s) 891, 941
MaeII ACGT 2 cut(s) 69, 752
MaeIII GTNAC 6 cut(s) 17, 49, 454, 557, 700, 748
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 4 cut(s) 230, 233, 857, 869
MhlI GDGCHC 3 cut(s) 263, 473, 629
MluCI AATT 5 cut(s) 234, 252, 292, 414, 798
MlyI GAGTC 4 cut(s) 68, 451, 844, 854
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 5 cut(s) 186, 192, 216, 221, 519
Mph1103I ATGCAT 1 cut(s) 937
MslI CAYNNNNRTG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 878
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 1 cut(s) 878
MwoI GCNNNNNNNGC 1 cut(s) 158
NcoI CCATGG 2 cut(s) 45, 63
NdeII GATC 1 cut(s) 191
NlaIII CATG 6 cut(s) 49, 67, 125, 229, 672, 745
NlaIV GGNNCC 4 cut(s) 471, 472, 690, 903
NmeAIII GCCGAG 1 cut(s) 569
NmuCI GTSAC 4 cut(s) 49, 454, 557, 700
NsiI ATGCAT 1 cut(s) 937
PagI TCATGA 1 cut(s) 225
PaqCI CACCTGC 1 cut(s) 431
PceI AGGCCT 1 cut(s) 529
PctI GAATGC 1 cut(s) 937
PfeI GAWTC 3 cut(s) 288, 477, 881
PkrI GCNGC 2 cut(s) 97, 154
PleI GAGTC 4 cut(s) 67, 451, 844, 854
PpsI GAGTC 4 cut(s) 67, 451, 844, 854
PpuMI RGGWCCY 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 263
Psp1406I AACGTT 1 cut(s) 752
Psp5II RGGWCCY 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 876
PspGI CCWGG 1 cut(s) 876
PspN4I GGNNCC 4 cut(s) 471, 472, 690, 903
PspOMI GGGCCC 1 cut(s) 469
PspPI GGNCC 5 cut(s) 469, 470, 672, 689, 901
PspPPI RGGWCCY 1 cut(s) 689
RsaI GTAC 2 cut(s) 424, 825
RsaNI GTAC 2 cut(s) 423, 824
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 263
SatI GCNGC 2 cut(s) 96, 153
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 5 cut(s) 469, 470, 672, 689, 901
SchI GAGTC 4 cut(s) 68, 451, 844, 854
ScrFI CCNGG 1 cut(s) 878
SduI GDGCHC 3 cut(s) 263, 473, 629
SfaNI GCATC 1 cut(s) 944
SfcI CTRYAG 2 cut(s) 381, 426
SinI GGWCC 2 cut(s) 672, 689
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
Sse9I AATT 5 cut(s) 234, 252, 292, 414, 798
SseBI AGGCCT 1 cut(s) 529
SspMI CTAG 2 cut(s) 891, 941
SstI GAGCTC 1 cut(s) 263
StuI AGGCCT 1 cut(s) 529
StyD4I CCNGG 1 cut(s) 876
StyI CCWWGG 3 cut(s) 45, 63, 757
TaaI ACNGT 5 cut(s) 87, 382, 661, 823, 828
TaiI ACGT 2 cut(s) 72, 755
TaqI TCGA 1 cut(s) 722
TasI AATT 5 cut(s) 234, 252, 292, 414, 798
TfiI GAWTC 3 cut(s) 288, 477, 881
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 4 cut(s) 49, 454, 557, 700
TseI GCWGC 2 cut(s) 95, 152
Tsp45I GTSAC 4 cut(s) 49, 454, 557, 700
TspDTI ATGAA 3 cut(s) 340, 352, 761
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 2 cut(s) 672, 689
XapI RAATTY 1 cut(s) 234
XbaI TCTAGA 1 cut(s) 940
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XspI CTAG 2 cut(s) 891, 941
Zsp2I ATGCAT 1 cut(s) 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.