Rorug03G0023600

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010459
Physical Location & Seq
Forward (+)
1868302 .. 1869192
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0023600.1

Sequence Viewer

Length: 474 bp
ATGGATCTGCAGCAGTTGCCGGAGGTTTGCGTAGCCAACATCGTATCGTTGACGACTCCCGAAGATGCCTTCCGCCTGTCGTTGCTCTCTAAGATGTTCAAGTCAGCGGCGGAATCCGACGCCGTTTGGGACAGGTTCATTCCGCCTGAGACACCCGAGATCCTGTCCGAGTCCGGCGAATCTGGATTATTGGCCGCCAAATCCAAGAAGGAGCTTTACCTCGCTCTCTGCAACAAACGTTTCCTCATCGACGACGGTAAATTGAGCTTTTCACTGGACAAACGGAGTGGGAAAAAATGTTACATGATATCTGCAAGAGAGCTTGGTATTATCTGGGGCGATACTCCCCGGTATTGGACATGGACTTCTCATCCTGAATCCAGGTTTCAGGAGGTGGCTGAGCTTCTTGATGTTTGCTGGCTTGAAATCAATGGGAAACTTGAAACACGCGTGTTGTCCCCATCGACTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko00480 ko01100 ko01110 ko01120 ko01130 ko01200 ko05230 map00030 map00480 map01100 map01110 map01120 map01130 map01200 map05230
Pfam Domains
Protein Families
G6PD_C G6PD_N

Protein Analysis

157

Amino Acids

17.76

Weight (kDa)

5.13

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 44 2.9e-06 F-box domain
PP2 PF14299 98 - 156 1e-26 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010459)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09420 AT1G09420
fragaria_vesca FvH4_6g08110 FvH4_6g08110 FvH4_6g08110 FvH4_6g08110 FvH4_6g08110
malus_domestica MD04G1189800.v1.1
prunus_persica Prupe.6G307600_v2.0.a1
pyrus_communis pycom04g16820
rosa_chinensis RchiOBHm_Chr3g0457961
rosa_laevigata RLG00000025183
rosa_multiflora Rmu_sc0000384.1_g000003
rosa_roxburghii Rroxscaffold_6G00421430
rosa_rugosa Rorug03G0023600 Rorug03G0023700
rosa_samantha Rh3AG084400 Rh3BG087100 Rh3CG087600 Rh3DG087900
rosa_wichuraiana Rw0G012360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 450
AciI CCGC 5 cut(s) 73, 107, 110, 143, 195
AclI AACGTT 1 cut(s) 238
AclWI GGATC 2 cut(s) 12, 154
AcoI YGGCCR 1 cut(s) 192
AcyI GRCGYC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 354
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 3 cut(s) 100, 425, 443
AjnI CCWGG 1 cut(s) 380
AluBI AGCT 4 cut(s) 214, 267, 322, 403
AluI AGCT 4 cut(s) 214, 267, 322, 403
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 2 cut(s) 12, 154
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 10
AsuC2I CCSGG 1 cut(s) 349
AvaI CYCGRG 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 200, 232
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 469
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 382
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 143
BfmI CTRYAG 2 cut(s) 8, 470
BisI GCNGC 3 cut(s) 11, 108, 195
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 3 cut(s) 12, 109, 196
Bme1390I CCNGG 2 cut(s) 349, 382
BmeT110I CYCGRG 1 cut(s) 155
BmrFI CCNGG 2 cut(s) 349, 382
BmsI GCATC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 349
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMII CTCAG 2 cut(s) 138, 390
BseNI ACTGG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 450
BshFI GGCC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 3 cut(s) 20, 174, 349
BslFI GGGAC 2 cut(s) 143, 442
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 143, 442
BsnI GGCC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 2 cut(s) 4, 159
Bsp1720I GCTNAGC 1 cut(s) 399
BspACI CCGC 5 cut(s) 73, 107, 110, 143, 195
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 139, 391
BspFNI CGCG 1 cut(s) 450
BspMAI CTGCAG 1 cut(s) 12
BspPI GGATC 2 cut(s) 12, 154
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 2 cut(s) 4, 159
BssNI GRCGYC 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 3 cut(s) 90, 147, 399
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 2 cut(s) 7, 162
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 4, 159
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 1 cut(s) 382
BstSCI CCNGG 2 cut(s) 347, 380
BstSFI CTRYAG 2 cut(s) 8, 470
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 4, 159
BstYI RGATCY 2 cut(s) 4, 159
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 419
CseI GACGC 1 cut(s) 128
CspCI CAANNNNNGTGG 2 cut(s) 268, 303
CviAII CATG 2 cut(s) 304, 360
CviJI RGCY 8 cut(s) 35, 194, 214, 267, 322, 398, 403, 421
CviKI_1 RGCY 8 cut(s) 35, 194, 214, 267, 322, 398, 403, 421
DdeI CTNAG 3 cut(s) 90, 147, 399
DpnI GATC 2 cut(s) 6, 161
DpnII GATC 2 cut(s) 4, 159
EaeI YGGCCR 1 cut(s) 192
EciI GGCGGA 3 cut(s) 62, 125, 132
Eco32I GATATC 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 380
EcoRV GATATC 1 cut(s) 309
FaeI CATG 2 cut(s) 307, 363
FaiI YATR 2 cut(s) 305, 361
FaqI GGGAC 2 cut(s) 143, 442
FatI CATG 2 cut(s) 303, 359
Fnu4HI GCNGC 3 cut(s) 11, 108, 195
FokI GGATG 1 cut(s) 357
Fsp4HI GCNGC 3 cut(s) 11, 108, 195
GluI GCNGC 3 cut(s) 11, 108, 195
HaeIII GGCC 1 cut(s) 194
HapII CCGG 3 cut(s) 20, 174, 349
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 2 cut(s) 307, 363
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 6 cut(s) 55, 113, 170, 179, 377, 466
HpaII CCGG 3 cut(s) 20, 174, 349
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 118, 169
Hpy188III TCNNGA 5 cut(s) 59, 183, 374, 389, 407
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 3 cut(s) 122, 254, 257
HpyAV CCTTC 2 cut(s) 79, 202
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 10, 231, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 3 cut(s) 90, 147, 399
HpySE526I ACGT 1 cut(s) 238
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 2 cut(s) 307, 363
Kzo9I GATC 2 cut(s) 4, 159
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 55
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 299
MalI GATC 2 cut(s) 6, 161
MboI GATC 2 cut(s) 4, 159
MboII GAAGA 1 cut(s) 74
MflI RGATCY 2 cut(s) 4, 159
MluCI AATT 1 cut(s) 260
MluI ACGCGT 1 cut(s) 448
MlyI GAGTC 3 cut(s) 49, 179, 460
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 4 cut(s) 16, 230, 254, 385
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 3 cut(s) 20, 174, 349
MspR9I CCNGG 2 cut(s) 349, 382
MvaI CCWGG 1 cut(s) 382
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 16
NciI CCSGG 1 cut(s) 349
NdeII GATC 2 cut(s) 4, 159
NlaIII CATG 2 cut(s) 307, 363
PfeI GAWTC 3 cut(s) 113, 179, 377
PkrI GCNGC 3 cut(s) 12, 109, 196
PleI GAGTC 3 cut(s) 49, 178, 460
PpsI GAGTC 3 cut(s) 49, 178, 460
Psp1406I AACGTT 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
PstI CTGCAG 1 cut(s) 12
PsuI RGATCY 2 cut(s) 4, 159
SatI GCNGC 3 cut(s) 11, 108, 195
Sau3AI GATC 2 cut(s) 4, 159
SchI GAGTC 3 cut(s) 49, 179, 460
ScrFI CCNGG 2 cut(s) 349, 382
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 2 cut(s) 8, 470
Sse9I AATT 1 cut(s) 260
SsiI CCGC 5 cut(s) 73, 107, 110, 143, 195
StyD4I CCNGG 2 cut(s) 347, 380
TaaI ACNGT 1 cut(s) 257
TaiI ACGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 249, 464
TasI AATT 1 cut(s) 260
TauI GCSGC 2 cut(s) 110, 197
TfiI GAWTC 3 cut(s) 113, 179, 377
TscAI CASTG 1 cut(s) 279
TseI GCWGC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 298
TspRI CASTG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.