Rorug03G0023700

Catalyzes the rate-limiting step of the oxidative pentose-phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
1884501 .. 1885811
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0023700.1

Sequence Viewer

Length: 1311 bp
ATGTCCACCATCGACTCTGTAACCAAAAGTTTTGCCACCTCGCTTGCCATTGCAAGCAATGAAGTTGTTGATATCTCCCGCATGTCTGAGGGAGGAGCGCGCCGCAATTCCCAGTCCTACCTTCTGGCATGGCCTTTGGCTATGAAGGCGACCTCGGCTGTTGATCTGCAGCGGCATTTTCGCAGAATCTGGATTCTGAAGCAGGGTTTTAGCGTTCAACAGCGAGCACCAGACCGCTTTCTGTTCTCATTTGATCTCAAAATGGATCGTAACAAGGTCTTGATGGGGGGACCTTGGAGTTTTGGGAGGACAATGGTGGTGGTTCAGCCCTATGATGGAGTTGCTCCGATGCAGGCGGTACCGATGCGTGATCTTCTCTGCTGGGTACGCATCTCCAATATGCCACCGGCGTATGAAGAAAAAGAAACAATTGTCAATGTAGCATCGGTGGTGGAGAATTTCCTTGATCTGGACCGAAAGTTGTTTGATACAATGAGGGAGATTAGGGTTCGAGTGTCTCACCCTATCTCGAAACCATTCTTCAAGGAGAAAACCCTAAAGTTTGCGCAGGATGTGGAACAAGAAGTCCATTTCTTCTTTGAGAAGCTAGTGGGACTGTGCAACACCTGCGGGCGGGTGTTTCATGAAGGTGGAACATGTGATGTTGTCTCTCCACCTTTGACAAAGAAGAAGGCTGTTGAAAACCCGGTGGCCCGGAAGCTTGACCTCACTGGATCTTTTCTAGGGTTGAATCCCAATCAGTTCAAGGATGGAACCTTCCATTTTCAAGGCATTACCACGCCTATCCTACCTCCTGTGGGACGAACCCTATTTGGTGGCCCTGAATCAAGCAAGTCGCGCCGCCCAGTGGTCATTCGAAGTGTAGACGCTAAGCAGGTCTGTGAGGATAATGCTTTAGCTCTTGTTCCAGTCGAAACTGATCCATGCTCCAAGCGGGTGAGATCTTTTCCTTCACCAAAAAAGCTTAAATTCTTAATGTCTGACTTGTTGGAAGGGAAAACTAGCCCGATTGCTCCTACAAAGAAGGTAAAACTGCCTGAGTTTCCTACTAAGTTCAGTGCCAAATCCTTGGGTCTTGTTGAGACTCCAGGTGGAATGTTGGTGCCCTCTGAAGTCATGCAACCAAGGCCTGCAATTGAGTTTCCGGTGGCAAAGAAGAAGAAGGGCAGACCATTAGGGTCCAAAAACAAGAATCCCAAGTCGAAGAAGGTGTCTGCTGAAGAGGTTTTGACTGTTATGTACTCAGGCAAGCCTCCTAGCCCTACTCTGAAGGGCAAAGAAAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

436

Amino Acids

48.55

Weight (kDa)

9.83

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 55 - 112 5.5e-09 Domain of unknown function (DUF4283)
zf-CCHC_4 PF14392 176 - 221 4.9e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010459)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 635
Acc16I TGCGCA 1 cut(s) 567
Acc36I ACCTGC 2 cut(s) 635, 886
Acc65I GGTACC 1 cut(s) 358
AccB1I GGYRCC 2 cut(s) 358, 1123
AccI GTMKAC 1 cut(s) 885
AccII CGCG 2 cut(s) 100, 859
AciI CCGC 9 cut(s) 79, 103, 172, 235, 356, 630, 634, 862, 955
AclWI GGATC 3 cut(s) 273, 742, 935
AcsI RAATTY 2 cut(s) 457, 989
AcuI CTGAAG 4 cut(s) 218, 1152, 1260, 1310
AfaI GTAC 3 cut(s) 360, 387, 1262
AfiI CCNNNNNNNGG 5 cut(s) 335, 469, 633, 818, 868
AflIII ACRYGT 1 cut(s) 656
AgsI TTSAA 6 cut(s) 218, 544, 701, 751, 766, 788
AjnI CCWGG 1 cut(s) 1108
AloI GAACNNNNNNTCC 2 cut(s) 570, 602
AluBI AGCT 4 cut(s) 607, 721, 920, 985
AluI AGCT 4 cut(s) 607, 721, 920, 985
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 3 cut(s) 522, 673, 1097
AlwI GGATC 3 cut(s) 273, 742, 935
AlwNI CAGNNNCTG 1 cut(s) 189
AoxI GGCC 4 cut(s) 131, 711, 838, 1148
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 2 cut(s) 457, 989
ArsI GACNNNNNNTTYG 2 cut(s) 1217, 1249
Asp700I GAANNNNTTC 1 cut(s) 536
Asp718I GGTACC 1 cut(s) 358
AspLEI GCGC 4 cut(s) 100, 102, 568, 861
AspS9I GGNCC 5 cut(s) 290, 472, 712, 839, 1200
AsuC2I CCSGG 2 cut(s) 707, 715
AsuHPI GGTGA 3 cut(s) 512, 966, 970
AsuII TTCGAA 1 cut(s) 877
AvaII GGWCC 3 cut(s) 290, 472, 1200
BaeGI GKGCMC 1 cut(s) 1128
BanI GGYRCC 2 cut(s) 358, 1123
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 181
BccI CCATC 4 cut(s) 17, 277, 329, 764
BciT130I CCWGG 1 cut(s) 1110
BcnI CCSGG 2 cut(s) 707, 715
BcoDI GTCTC 3 cut(s) 522, 673, 1097
BfaI CTAG 5 cut(s) 608, 743, 1023, 1278, 1309
BfmI CTRYAG 1 cut(s) 167
BfuAI ACCTGC 2 cut(s) 635, 886
BglII AGATCT 2 cut(s) 962, 1305
BisI GCNGC 4 cut(s) 103, 170, 173, 862
BlpI GCTNAGC 1 cut(s) 891
BlsI GCNGC 4 cut(s) 104, 171, 174, 863
Bme1390I CCNGG 3 cut(s) 707, 715, 1110
Bme18I GGWCC 3 cut(s) 290, 472, 1200
BmgT120I GGNCC 5 cut(s) 290, 472, 712, 839, 1200
BmiI GGNNCC 5 cut(s) 291, 360, 775, 1125, 1201
BmrFI CCNGG 3 cut(s) 707, 715, 1110
BmrI ACTGGG 2 cut(s) 106, 860
BmsI GCATC 4 cut(s) 339, 354, 399, 452
BmuI ACTGGG 2 cut(s) 106, 860
BpmI CTGGAG 1 cut(s) 1092
Bpu1102I GCTNAGC 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 877
BpuMI CCSGG 2 cut(s) 707, 715
BsaJI CCNNGG 4 cut(s) 153, 293, 1089, 1145
BsaWI WCCGGW 1 cut(s) 1165
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 469, 633, 818, 868
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 4 cut(s) 112, 736, 866, 929
Bse3DI GCAATG 2 cut(s) 48, 64
BseBI CCWGG 1 cut(s) 1110
BseDI CCNNGG 4 cut(s) 153, 293, 1089, 1145
BseGI GGATG 2 cut(s) 577, 775
BseLI CCNNNNNNNGG 5 cut(s) 335, 469, 633, 818, 868
BseMI GCAATG 2 cut(s) 48, 64
BseMII CTCAG 3 cut(s) 78, 1050, 1278
BseNI ACTGG 4 cut(s) 112, 736, 866, 929
BsePI GCGCGC 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 1128
BseXI GCAGC 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 381
Bsh1236I CGCG 2 cut(s) 100, 859
BshFI GGCC 4 cut(s) 133, 713, 840, 1150
BshNI GGYRCC 2 cut(s) 358, 1123
BsiHKAI GWGCWC 1 cut(s) 229
BsiSI CCGG 4 cut(s) 407, 707, 715, 1166
BslFI GGGAC 3 cut(s) 303, 627, 834
BslI CCNNNNNNNGG 5 cut(s) 335, 469, 633, 818, 868
BsmAI GTCTC 3 cut(s) 522, 673, 1097
BsmFI GGGAC 3 cut(s) 303, 627, 834
BsnI GGCC 4 cut(s) 133, 713, 840, 1150
Bsp119I TTCGAA 1 cut(s) 877
Bsp1286I GDGCHC 2 cut(s) 229, 1128
Bsp143I GATC 9 cut(s) 163, 253, 265, 370, 466, 734, 940, 962, 1305
Bsp1720I GCTNAGC 1 cut(s) 891
BspACI CCGC 9 cut(s) 79, 103, 172, 235, 356, 630, 634, 862, 955
BspANI GGCC 4 cut(s) 133, 713, 840, 1150
BspCNI CTCAG 3 cut(s) 79, 1051, 1277
BspFNI CGCG 2 cut(s) 100, 859
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 5 cut(s) 291, 360, 775, 1125, 1201
BspMAI CTGCAG 1 cut(s) 171
BspMI ACCTGC 2 cut(s) 635, 886
BspPI GGATC 3 cut(s) 273, 742, 935
BspT104I TTCGAA 1 cut(s) 877
BspT107I GGYRCC 2 cut(s) 358, 1123
BsrDI GCAATG 2 cut(s) 48, 64
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 4 cut(s) 112, 736, 866, 929
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 4 cut(s) 153, 293, 1089, 1145
BssHII GCGCGC 1 cut(s) 98
BssMI GATC 9 cut(s) 163, 253, 265, 370, 466, 734, 940, 962, 1305
BssT1I CCWWGG 3 cut(s) 293, 1089, 1145
Bst2UI CCWGG 1 cut(s) 1110
Bst4CI ACNGT 2 cut(s) 618, 1255
Bst6I CTCTTC 1 cut(s) 1236
BstAPI GCANNNNNTGC 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 877
BstC8I GCNNGC 8 cut(s) 45, 55, 100, 225, 354, 632, 1152, 1271
BstDEI CTNAG 5 cut(s) 87, 891, 1059, 1071, 1264
BstF5I GGATG 2 cut(s) 577, 775
BstFNI CGCG 2 cut(s) 100, 859
BstHHI GCGC 4 cut(s) 100, 102, 568, 861
BstKTI GATC 9 cut(s) 166, 256, 268, 373, 469, 737, 943, 965, 1308
BstMAI GTCTC 3 cut(s) 522, 673, 1097
BstMBI GATC 9 cut(s) 163, 253, 265, 370, 466, 734, 940, 962, 1305
BstMWI GCNNNNNNNGC 6 cut(s) 146, 155, 387, 627, 858, 1147
BstNI CCWGG 1 cut(s) 1110
BstNSI RCATGY 2 cut(s) 85, 660
BstSCI CCNGG 3 cut(s) 705, 713, 1108
BstSFI CTRYAG 1 cut(s) 167
BstSLI GKGCMC 1 cut(s) 1128
BstUI CGCG 2 cut(s) 100, 859
BstV1I GCAGC 1 cut(s) 181
BstX2I RGATCY 3 cut(s) 734, 962, 1305
BstXI CCANNNNNNTGG 1 cut(s) 1090
BstYI RGATCY 3 cut(s) 734, 962, 1305
BsuRI GGCC 4 cut(s) 133, 713, 840, 1150
BtsCI GGATG 2 cut(s) 577, 775
BtsIMutI CAGTG 3 cut(s) 729, 873, 1084
BveI ACCTGC 2 cut(s) 635, 886
Cac8I GCNNGC 8 cut(s) 45, 55, 100, 225, 354, 632, 1152, 1271
CaiI CAGNNNCTG 1 cut(s) 189
CciI TCATGA 1 cut(s) 643
CfoI GCGC 4 cut(s) 100, 102, 568, 861
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 5 cut(s) 290, 472, 712, 839, 1200
CseI GACGC 1 cut(s) 896
Csp6I GTAC 3 cut(s) 359, 386, 1261
CspCI CAANNNNNGTGG 4 cut(s) 25, 60, 300, 335
CviAII CATG 6 cut(s) 82, 129, 644, 657, 945, 1138
CviQI GTAC 3 cut(s) 359, 386, 1261
DdeI CTNAG 5 cut(s) 87, 891, 1059, 1071, 1264
DpnI GATC 9 cut(s) 165, 255, 267, 372, 468, 736, 942, 964, 1307
DpnII GATC 9 cut(s) 163, 253, 265, 370, 466, 734, 940, 962, 1305
Eam1104I CTCTTC 1 cut(s) 1236
EarI CTCTTC 1 cut(s) 1236
Eco130I CCWWGG 3 cut(s) 293, 1089, 1145
Eco147I AGGCCT 1 cut(s) 1150
Eco32I GATATC 1 cut(s) 73
Eco47I GGWCC 3 cut(s) 290, 472, 1200
Eco57I CTGAAG 4 cut(s) 218, 1152, 1260, 1310
EcoO109I RGGNCCY 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 1108
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 3 cut(s) 293, 1089, 1145
ErhI CCWWGG 3 cut(s) 293, 1089, 1145
FaeI CATG 6 cut(s) 85, 132, 647, 660, 948, 1141
FaqI GGGAC 3 cut(s) 303, 627, 834
FatI CATG 6 cut(s) 81, 128, 643, 656, 944, 1137
FauI CCCGC 4 cut(s) 86, 623, 627, 948
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 4 cut(s) 103, 170, 173, 862
FokI GGATG 2 cut(s) 584, 782
Fsp4HI GCNGC 4 cut(s) 103, 170, 173, 862
FspBI CTAG 5 cut(s) 608, 743, 1023, 1278, 1309
FspI TGCGCA 1 cut(s) 567
GlaI GCGC 4 cut(s) 99, 101, 567, 860
GluI GCNGC 4 cut(s) 103, 170, 173, 862
GsaI CCCAGC 1 cut(s) 385
GsuI CTGGAG 1 cut(s) 1092
HaeIII GGCC 4 cut(s) 133, 713, 840, 1150
HapII CCGG 4 cut(s) 407, 707, 715, 1166
HgaI GACGC 1 cut(s) 896
HhaI GCGC 4 cut(s) 100, 102, 568, 861
Hin1II CATG 6 cut(s) 85, 132, 647, 660, 948, 1141
Hin6I GCGC 4 cut(s) 98, 100, 566, 859
HinP1I GCGC 4 cut(s) 98, 100, 566, 859
HindIII AAGCTT 2 cut(s) 719, 983
HinfI GANTC 7 cut(s) 14, 186, 193, 751, 845, 1105, 1213
HpaII CCGG 4 cut(s) 407, 707, 715, 1166
HphI GGTGA 3 cut(s) 512, 966, 970
Hpy166II GTNNAC 2 cut(s) 6, 886
Hpy188I TCNGA 6 cut(s) 88, 198, 348, 1003, 1132, 1290
Hpy188III TCNNGA 5 cut(s) 190, 280, 470, 529, 644
Hpy8I GTNNAC 2 cut(s) 6, 886
HpyCH4III ACNGT 2 cut(s) 618, 1255
HpyCH4V TGCA 6 cut(s) 53, 169, 352, 621, 1141, 1154
HpyF10VI GCNNNNNNNGC 6 cut(s) 146, 155, 387, 627, 858, 1147
HpyF3I CTNAG 5 cut(s) 87, 891, 1059, 1071, 1264
Hsp92II CATG 6 cut(s) 85, 132, 647, 660, 948, 1141
HspAI GCGC 4 cut(s) 98, 100, 566, 859
KpnI GGTACC 1 cut(s) 362
Kzo9I GATC 9 cut(s) 163, 253, 265, 370, 466, 734, 940, 962, 1305
LmnI GCTCC 4 cut(s) 95, 349, 953, 1039
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 4 cut(s) 339, 354, 399, 452
MaeI CTAG 5 cut(s) 608, 743, 1023, 1278, 1309
MaeIII GTNAC 2 cut(s) 19, 269
MalI GATC 9 cut(s) 165, 255, 267, 372, 468, 736, 942, 964, 1307
MboI GATC 9 cut(s) 163, 253, 265, 370, 466, 734, 940, 962, 1305
MboII GAAGA 9 cut(s) 365, 428, 532, 586, 700, 1189, 1192, 1237, 1253
MfeI CAATTG 2 cut(s) 429, 1155
MflI RGATCY 3 cut(s) 734, 962, 1305
MhlI GDGCHC 2 cut(s) 229, 1128
MluCI AATT 5 cut(s) 106, 429, 457, 989, 1155
MlyI GAGTC 2 cut(s) 8, 1099
MmeI TCCRAC 1 cut(s) 990
MroXI GAANNNNTTC 1 cut(s) 536
MseI TTAA 2 cut(s) 987, 995
MslI CAYNNNNRTG 1 cut(s) 648
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 4 cut(s) 407, 707, 715, 1166
MspR9I CCNGG 3 cut(s) 707, 715, 1110
MunI CAATTG 2 cut(s) 429, 1155
MvaI CCWGG 1 cut(s) 1110
MvnI CGCG 2 cut(s) 100, 859
MwoI GCNNNNNNNGC 6 cut(s) 146, 155, 387, 627, 858, 1147
NciI CCSGG 2 cut(s) 707, 715
NdeII GATC 9 cut(s) 163, 253, 265, 370, 466, 734, 940, 962, 1305
NlaIII CATG 6 cut(s) 85, 132, 647, 660, 948, 1141
NlaIV GGNNCC 5 cut(s) 291, 360, 775, 1125, 1201
NmeAIII GCCGAG 1 cut(s) 134
NsbI TGCGCA 1 cut(s) 567
NspI RCATGY 2 cut(s) 85, 660
NspV TTCGAA 1 cut(s) 877
PagI TCATGA 1 cut(s) 643
PaqCI CACCTGC 1 cut(s) 635
PauI GCGCGC 1 cut(s) 98
PceI AGGCCT 1 cut(s) 1150
PciI ACATGT 1 cut(s) 656
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 5 cut(s) 186, 193, 751, 845, 1213
PkrI GCNGC 4 cut(s) 104, 171, 174, 863
PleI GAGTC 2 cut(s) 8, 1099
PpsI GAGTC 2 cut(s) 8, 1099
PpuMI RGGWCCY 1 cut(s) 290
PscI ACATGT 1 cut(s) 656
Psp5II RGGWCCY 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 1108
PspFI CCCAGC 1 cut(s) 381
PspGI CCWGG 1 cut(s) 1108
PspN4I GGNNCC 5 cut(s) 291, 360, 775, 1125, 1201
PspPI GGNCC 5 cut(s) 290, 472, 712, 839, 1200
PspPPI RGGWCCY 1 cut(s) 290
PstI CTGCAG 1 cut(s) 171
PstNI CAGNNNCTG 1 cut(s) 189
PsuI RGATCY 3 cut(s) 734, 962, 1305
PteI GCGCGC 1 cut(s) 98
RsaI GTAC 3 cut(s) 360, 387, 1262
RsaNI GTAC 3 cut(s) 359, 386, 1261
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 2 cut(s) 987, 995
SatI GCNGC 4 cut(s) 103, 170, 173, 862
Sau3AI GATC 9 cut(s) 163, 253, 265, 370, 466, 734, 940, 962, 1305
Sau96I GGNCC 5 cut(s) 290, 472, 712, 839, 1200
SchI GAGTC 2 cut(s) 8, 1099
ScrFI CCNGG 3 cut(s) 707, 715, 1110
SduI GDGCHC 2 cut(s) 229, 1128
SfaNI GCATC 4 cut(s) 339, 354, 399, 452
SfcI CTRYAG 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 877
SgrAI CRCCGGYG 1 cut(s) 406
SinI GGWCC 3 cut(s) 290, 472, 1200
SmiMI CAYNNNNRTG 1 cut(s) 648
Sse9I AATT 5 cut(s) 106, 429, 457, 989, 1155
SseBI AGGCCT 1 cut(s) 1150
SsiI CCGC 9 cut(s) 79, 103, 172, 235, 356, 630, 634, 862, 955
SspMI CTAG 5 cut(s) 608, 743, 1023, 1278, 1309
StuI AGGCCT 1 cut(s) 1150
StyD4I CCNGG 3 cut(s) 705, 713, 1108
StyI CCWWGG 3 cut(s) 293, 1089, 1145
TaaI ACNGT 2 cut(s) 618, 1255
TaqI TCGA 6 cut(s) 12, 511, 530, 877, 933, 1223
TaqII GACCGA 1 cut(s) 489
TasI AATT 5 cut(s) 106, 429, 457, 989, 1155
TatI WGTACW 1 cut(s) 1260
TauI GCSGC 3 cut(s) 105, 175, 864
TfiI GAWTC 5 cut(s) 186, 193, 751, 845, 1213
Tru1I TTAA 2 cut(s) 987, 995
Tru9I TTAA 2 cut(s) 987, 995
TscAI CASTG 3 cut(s) 736, 873, 1084
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 5 cut(s) 75, 158, 429, 632, 660
TspRI CASTG 3 cut(s) 736, 873, 1084
VpaK11BI GGWCC 3 cut(s) 290, 472, 1200
XapI RAATTY 2 cut(s) 457, 989
XceI RCATGY 2 cut(s) 85, 660
XmiI GTMKAC 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 5 cut(s) 608, 743, 1023, 1278, 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.